Wall clock time and date at job start Sat Apr 11 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21334 * 119.99631 * 2 1 4 4 C 1.46520 * 119.99643 * 180.02562 * 2 1 3 5 5 C 1.40157 * 120.13047 * 359.97111 * 4 2 1 6 6 C 1.36367 * 120.15018 * 180.02562 * 5 4 2 7 7 C 1.39765 * 120.40309 * 0.02562 * 6 5 4 8 8 C 1.48354 * 119.87297 * 179.97438 * 7 6 5 9 9 N 1.34092 * 126.67972 * 180.02562 * 8 7 6 10 10 N 1.28979 * 107.26449 * 179.97438 * 9 8 7 11 11 N 1.28731 * 108.95765 * 0.02562 * 10 9 8 12 12 H 0.97005 * 125.33131 * 180.02562 * 11 10 9 13 13 N 1.28869 * 109.33091 * 359.75989 * 11 10 9 14 14 C 1.39091 * 120.24836 * 359.97438 * 7 6 5 15 15 C 1.38715 * 119.84749 * 0.02562 * 14 7 6 16 16 N 1.38746 * 120.20264 * 179.97438 * 15 14 7 17 17 C 1.46847 * 110.99925 * 296.04669 * 16 15 14 18 18 C 1.53034 * 109.52731 * 185.83424 * 17 16 15 19 19 C 1.53117 * 109.28007 * 300.82273 * 18 17 16 20 20 C 1.53124 * 109.16066 * 57.64807 * 19 18 17 21 21 H 1.08997 * 109.50179 * 62.33183 * 20 19 18 22 22 C 1.50695 * 109.50072 * 182.40582 * 20 19 18 23 23 H 1.08006 * 120.00252 * 120.00272 * 22 20 19 24 24 C 1.37880 * 120.00479 * 300.00285 * 22 20 19 25 25 N 1.31513 * 120.00431 * 180.02562 * 24 22 20 26 26 Si 1.86803 * 119.99677 * 0.02562 * 24 22 20 27 27 H 1.48497 * 109.47387 * 90.00198 * 26 24 22 28 28 H 1.48504 * 109.46874 * 210.00321 * 26 24 22 29 29 H 1.48506 * 109.47132 * 329.99600 * 26 24 22 30 30 C 1.46846 * 110.99988 * 60.25060 * 16 15 14 31 31 H 1.08995 * 109.47075 * 239.99780 * 1 2 3 32 32 H 1.09004 * 109.46949 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.47033 * 119.99304 * 1 2 3 34 34 H 1.08007 * 119.91969 * 0.04896 * 5 4 2 35 35 H 1.08001 * 119.79715 * 180.28399 * 6 5 4 36 36 H 1.07997 * 120.07933 * 179.97438 * 14 7 6 37 37 H 1.09001 * 109.46379 * 305.85094 * 17 16 15 38 38 H 1.09003 * 109.46513 * 65.81496 * 17 16 15 39 39 H 1.09005 * 109.50219 * 60.75892 * 18 17 16 40 40 H 1.08996 * 109.50608 * 180.87430 * 18 17 16 41 41 H 1.09000 * 109.52748 * 177.55725 * 19 18 17 42 42 H 1.09003 * 109.51988 * 297.68028 * 19 18 17 43 43 H 0.97000 * 120.00332 * 179.97438 * 25 24 22 44 44 H 1.09006 * 109.46771 * 294.18343 * 30 16 15 45 45 H 1.09003 * 109.46089 * 54.14793 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2396 -1.2689 -0.0006 5 6 1.5415 -2.4843 -0.0005 6 6 2.2228 -3.6655 -0.0005 7 6 3.6204 -3.6759 0.0000 8 6 4.3498 -4.9678 0.0005 9 7 5.6800 -5.1367 0.0015 10 7 5.9047 -6.4067 0.0023 11 7 4.7787 -7.0306 0.0013 12 1 4.6715 -7.9947 0.0019 13 7 3.8162 -6.1737 0.0050 14 6 4.3300 -2.4796 -0.0001 15 6 3.6474 -1.2721 -0.0001 16 7 4.3479 -0.0744 0.0004 17 6 5.1327 0.0757 1.2324 18 6 5.7739 1.4649 1.2643 19 6 6.6759 1.6337 0.0386 20 6 5.8443 1.4247 -1.2300 21 1 5.0658 2.1857 -1.2843 22 6 6.7367 1.5308 -2.4397 23 1 6.8332 0.6932 -3.1147 24 6 7.4301 2.6971 -2.6848 25 7 8.2085 2.7898 -3.7408 26 14 7.2638 4.1455 -1.5170 27 1 8.2975 4.0468 -0.4555 28 1 7.4471 5.4122 -2.2702 29 1 5.9144 4.1293 -0.8971 30 6 5.2011 0.0367 -1.1895 31 1 -0.3633 -0.5138 0.8899 32 1 -0.3633 1.0277 -0.0005 33 1 -0.3633 -0.5137 -0.8901 34 1 0.4614 -2.4852 -0.0008 35 1 1.6792 -4.5987 -0.0051 36 1 5.4100 -2.4909 0.0007 37 1 4.4787 -0.0423 2.0964 38 1 5.9128 -0.6850 1.2611 39 1 4.9939 2.2262 1.2497 40 1 6.3690 1.5703 2.1714 41 1 7.1008 2.6375 0.0344 42 1 7.4796 0.8982 0.0738 43 1 8.6960 3.6104 -3.9135 44 1 5.9810 -0.7239 -1.1497 45 1 4.5968 -0.1097 -2.0848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602969341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:38 Heat of formation + Delta-G solvation = 134.461789 kcal Electronic energy + Delta-G solvation = -29811.698311 eV Core-core repulsion = 25832.909419 eV Total energy + Delta-G solvation = -3978.788893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.68212 -40.49766 -38.40728 -37.75424 -34.67416 -34.21599 -33.58266 -32.15736 -31.52760 -30.25332 -29.53494 -29.02526 -25.21339 -24.99159 -24.88906 -23.96747 -22.54297 -21.51061 -20.89873 -19.84273 -19.42776 -18.69957 -17.36988 -17.33186 -16.56142 -16.13116 -15.76930 -15.29738 -14.90753 -14.58272 -14.28473 -14.19015 -14.01367 -13.95374 -13.61134 -13.12686 -13.10617 -12.72514 -12.65512 -12.45519 -12.29650 -12.13738 -12.11252 -12.03906 -11.59198 -11.58503 -11.26639 -11.07820 -11.01887 -10.98563 -10.47192 -10.06926 -9.90295 -9.66784 -9.48061 -9.12808 -8.96798 -8.88551 -8.62622 -8.43647 -7.86378 -5.99368 -3.98170 0.20810 0.90414 1.21439 1.86362 1.98084 2.71740 3.35843 3.42427 3.47219 3.52959 3.69557 3.94181 4.13812 4.16620 4.50773 4.71511 4.90283 4.99355 5.13982 5.16185 5.26271 5.31506 5.36829 5.37365 5.43481 5.53665 5.55382 5.69382 5.82860 5.90310 6.00041 6.01628 6.11842 6.17249 6.19835 6.31411 6.33301 6.34946 6.53708 6.60778 6.67728 6.89622 6.92003 7.27745 7.36584 7.72277 7.77893 7.87331 7.90931 7.92455 8.59316 9.03683 9.63653 11.13830 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010737 B = 0.003782 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.094635 B = 7402.417987 C = 9136.781605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.375 3.625 3 O -0.397 6.397 4 C -0.134 4.134 5 C -0.077 4.077 6 C -0.104 4.104 7 C 0.014 3.986 8 C 0.218 3.782 9 N -0.260 5.260 10 N -0.048 5.048 11 N -0.229 5.229 12 H 0.475 0.525 13 N -0.293 5.293 14 C -0.119 4.119 15 C 0.163 3.837 16 N -0.496 5.496 17 C 0.072 3.928 18 C -0.118 4.118 19 C -0.122 4.122 20 C 0.023 3.977 21 H 0.040 0.960 22 C -0.513 4.513 23 H 0.072 0.928 24 C 0.071 3.929 25 N -0.903 5.903 26 Si 0.886 3.114 27 H -0.280 1.280 28 H -0.299 1.299 29 H -0.261 1.261 30 C 0.084 3.916 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.063 0.937 38 H 0.034 0.966 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.263 0.737 44 H 0.033 0.967 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.678 -18.160 11.355 26.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.248 3.752 3 O -0.267 6.267 4 C -0.137 4.137 5 C -0.095 4.095 6 C -0.124 4.124 7 C 0.009 3.991 8 C -0.061 4.061 9 N -0.133 5.133 10 N -0.043 5.043 11 N -0.075 5.075 12 H 0.329 0.671 13 N -0.145 5.145 14 C -0.141 4.141 15 C 0.067 3.933 16 N -0.217 5.217 17 C -0.054 4.054 18 C -0.155 4.155 19 C -0.160 4.160 20 C 0.004 3.996 21 H 0.058 0.942 22 C -0.551 4.551 23 H 0.090 0.910 24 C -0.130 4.130 25 N -0.542 5.542 26 Si 0.716 3.284 27 H -0.207 1.207 28 H -0.227 1.227 29 H -0.186 1.186 30 C -0.041 4.041 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.988 -17.435 11.236 25.590 hybrid contribution 0.244 -0.507 0.494 0.749 sum -14.744 -17.942 11.731 26.017 Atomic orbital electron populations 1.22264 0.94613 1.04817 1.03826 1.22108 0.90823 0.87958 0.74333 1.90709 1.71389 1.33158 1.31493 1.20833 0.93100 0.95425 1.04301 1.20995 1.00203 0.90726 0.97595 1.20733 0.92058 0.99042 1.00598 1.17309 0.92222 0.86496 1.03037 1.23764 0.88257 0.92558 1.01566 1.76195 1.14107 1.05941 1.17100 1.78964 1.10431 1.00332 1.14565 1.47744 1.01247 1.12368 1.46133 0.67092 1.74912 1.18037 0.99438 1.22076 1.21988 1.01634 0.91319 0.99190 1.19035 0.92175 0.89005 0.93044 1.59456 1.29792 1.28308 1.04121 1.22019 0.94831 0.97907 0.90606 1.21637 0.99190 0.96175 0.98545 1.22031 0.98237 1.00496 0.95233 1.19143 0.94816 0.92487 0.93204 0.94174 1.20983 1.25565 1.00869 1.07676 0.90980 1.24956 0.94650 0.98292 0.95082 1.69901 1.29377 1.27486 1.27391 0.86853 0.79385 0.81672 0.80458 1.20729 1.22715 1.18563 1.22191 0.93106 0.99648 0.89109 0.89508 0.89950 0.89368 0.84319 0.84711 0.84083 0.91860 0.94770 0.91345 0.92620 0.93459 0.92478 0.92756 0.94884 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 8.91 36.01 0.32 -1.34 16 2 C 0.37 5.03 7.21 -30.97 -0.22 4.80 16 3 O -0.40 -7.22 15.75 5.51 0.09 -7.13 16 4 C -0.13 -1.73 5.89 -104.88 -0.62 -2.35 16 5 C -0.08 -0.72 9.40 -39.54 -0.37 -1.09 16 6 C -0.10 -1.03 9.61 -39.69 -0.38 -1.41 16 7 C 0.01 0.17 5.88 -104.85 -0.62 -0.45 16 8 C 0.22 2.72 7.93 -156.27 -1.24 1.48 16 9 N -0.26 -3.59 12.21 32.15 0.39 -3.20 16 10 N -0.05 -0.54 13.47 60.35 0.81 0.28 16 11 N -0.23 -1.78 7.90 60.35 0.48 -1.30 16 12 H 0.47 1.21 8.96 -340.35 -3.05 -1.84 16 13 N -0.29 -2.93 12.06 32.16 0.39 -2.54 16 14 C -0.12 -1.71 8.31 -39.09 -0.33 -2.03 16 15 C 0.16 2.53 4.67 -83.59 -0.39 2.14 16 16 N -0.50 -9.06 2.54 -170.90 -0.43 -9.49 16 17 C 0.07 1.23 5.16 -3.84 -0.02 1.21 16 18 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 19 C -0.12 -2.73 4.73 -26.61 -0.13 -2.85 16 20 C 0.02 0.56 1.85 -91.69 -0.17 0.39 16 21 H 0.04 1.06 7.21 -51.93 -0.37 0.68 16 22 C -0.51 -14.70 9.15 -34.44 -0.31 -15.02 16 23 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 24 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 25 N -0.90 -28.23 13.96 55.43 0.77 -27.45 16 26 Si 0.89 22.77 24.35 -169.99 -4.14 18.63 16 27 H -0.28 -6.98 6.89 56.52 0.39 -6.60 16 28 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 29 H -0.26 -6.56 6.53 56.52 0.37 -6.19 16 30 C 0.08 1.78 4.33 -3.84 -0.02 1.76 16 31 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 32 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 34 H 0.14 0.80 7.02 -52.48 -0.37 0.43 16 35 H 0.14 1.04 7.86 -52.49 -0.41 0.63 16 36 H 0.14 2.18 6.92 -52.49 -0.36 1.82 16 37 H 0.06 0.97 8.10 -51.93 -0.42 0.55 16 38 H 0.03 0.56 7.52 -51.93 -0.39 0.17 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 1.12 3.34 -51.93 -0.17 0.94 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 44 H 0.03 0.70 7.33 -51.93 -0.38 0.31 16 45 H 0.07 1.47 8.10 -51.93 -0.42 1.05 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -35.81 364.71 -9.38 -45.19 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -8.48 Total: -3.38 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -4.75 Total: -15.10 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 2.41 Total: -43.71 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: 0.09 Total: -7.13 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.81 -9.38 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602969341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.651 kcal (2) G-P(sol) polarization free energy of solvation -35.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds