Wall clock time and date at job start Sat Apr 11 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21334 * 119.99631 * 2 1 4 4 C 1.46520 * 119.99643 * 180.02562 * 2 1 3 5 5 C 1.40157 * 120.13047 * 359.97111 * 4 2 1 6 6 C 1.36367 * 120.15018 * 180.02562 * 5 4 2 7 7 C 1.39765 * 120.40309 * 0.02562 * 6 5 4 8 8 C 1.48354 * 119.87297 * 179.97438 * 7 6 5 9 9 N 1.34092 * 126.67972 * 180.02562 * 8 7 6 10 10 N 1.28979 * 107.26449 * 179.97438 * 9 8 7 11 11 N 1.28731 * 108.95765 * 0.02562 * 10 9 8 12 12 H 0.97005 * 125.33131 * 180.02562 * 11 10 9 13 13 N 1.28869 * 109.33091 * 359.75989 * 11 10 9 14 14 C 1.39091 * 120.24836 * 359.97438 * 7 6 5 15 15 C 1.38715 * 119.84749 * 0.02562 * 14 7 6 16 16 N 1.38746 * 120.20264 * 179.97438 * 15 14 7 17 17 C 1.46847 * 110.99925 * 296.04669 * 16 15 14 18 18 C 1.53034 * 109.52731 * 185.83424 * 17 16 15 19 19 C 1.53117 * 109.28007 * 300.82273 * 18 17 16 20 20 C 1.53124 * 109.16066 * 57.64807 * 19 18 17 21 21 H 1.08997 * 109.50179 * 62.33183 * 20 19 18 22 22 C 1.50695 * 109.50072 * 182.40582 * 20 19 18 23 23 H 1.08006 * 120.00252 * 120.00272 * 22 20 19 24 24 C 1.37880 * 120.00479 * 300.00285 * 22 20 19 25 25 N 1.31513 * 120.00431 * 180.02562 * 24 22 20 26 26 Si 1.86803 * 119.99677 * 0.02562 * 24 22 20 27 27 H 1.48497 * 109.47387 * 90.00198 * 26 24 22 28 28 H 1.48504 * 109.46874 * 210.00321 * 26 24 22 29 29 H 1.48506 * 109.47132 * 329.99600 * 26 24 22 30 30 C 1.46846 * 110.99988 * 60.25060 * 16 15 14 31 31 H 1.08995 * 109.47075 * 239.99780 * 1 2 3 32 32 H 1.09004 * 109.46949 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.47033 * 119.99304 * 1 2 3 34 34 H 1.08007 * 119.91969 * 0.04896 * 5 4 2 35 35 H 1.08001 * 119.79715 * 180.28399 * 6 5 4 36 36 H 1.07997 * 120.07933 * 179.97438 * 14 7 6 37 37 H 1.09001 * 109.46379 * 305.85094 * 17 16 15 38 38 H 1.09003 * 109.46513 * 65.81496 * 17 16 15 39 39 H 1.09005 * 109.50219 * 60.75892 * 18 17 16 40 40 H 1.08996 * 109.50608 * 180.87430 * 18 17 16 41 41 H 1.09000 * 109.52748 * 177.55725 * 19 18 17 42 42 H 1.09003 * 109.51988 * 297.68028 * 19 18 17 43 43 H 0.97000 * 120.00332 * 179.97438 * 25 24 22 44 44 H 1.09006 * 109.46771 * 294.18343 * 30 16 15 45 45 H 1.09003 * 109.46089 * 54.14793 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2396 -1.2689 -0.0006 5 6 1.5415 -2.4843 -0.0005 6 6 2.2228 -3.6655 -0.0005 7 6 3.6204 -3.6759 0.0000 8 6 4.3498 -4.9678 0.0005 9 7 5.6800 -5.1367 0.0015 10 7 5.9047 -6.4067 0.0023 11 7 4.7787 -7.0306 0.0013 12 1 4.6715 -7.9947 0.0019 13 7 3.8162 -6.1737 0.0050 14 6 4.3300 -2.4796 -0.0001 15 6 3.6474 -1.2721 -0.0001 16 7 4.3479 -0.0744 0.0004 17 6 5.1327 0.0757 1.2324 18 6 5.7739 1.4649 1.2643 19 6 6.6759 1.6337 0.0386 20 6 5.8443 1.4247 -1.2300 21 1 5.0658 2.1857 -1.2843 22 6 6.7367 1.5308 -2.4397 23 1 6.8332 0.6932 -3.1147 24 6 7.4301 2.6971 -2.6848 25 7 8.2085 2.7898 -3.7408 26 14 7.2638 4.1455 -1.5170 27 1 8.2975 4.0468 -0.4555 28 1 7.4471 5.4122 -2.2702 29 1 5.9144 4.1293 -0.8971 30 6 5.2011 0.0367 -1.1895 31 1 -0.3633 -0.5138 0.8899 32 1 -0.3633 1.0277 -0.0005 33 1 -0.3633 -0.5137 -0.8901 34 1 0.4614 -2.4852 -0.0008 35 1 1.6792 -4.5987 -0.0051 36 1 5.4100 -2.4909 0.0007 37 1 4.4787 -0.0423 2.0964 38 1 5.9128 -0.6850 1.2611 39 1 4.9939 2.2262 1.2497 40 1 6.3690 1.5703 2.1714 41 1 7.1008 2.6375 0.0344 42 1 7.4796 0.8982 0.0738 43 1 8.6960 3.6104 -3.9135 44 1 5.9810 -0.7239 -1.1497 45 1 4.5968 -0.1097 -2.0848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602969341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:37 Heat of formation + Delta-G solvation = 109.327271 kcal Electronic energy + Delta-G solvation = -29812.788226 eV Core-core repulsion = 25832.909419 eV Total energy + Delta-G solvation = -3979.878807 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.52526 -41.62217 -39.67896 -38.92312 -35.89051 -35.45416 -34.65071 -33.99868 -32.45898 -32.07992 -30.50227 -30.01022 -26.94637 -26.11259 -25.95530 -25.29232 -23.44026 -23.10131 -22.25676 -20.80513 -20.44827 -20.15695 -18.97235 -18.20241 -18.13253 -17.27087 -16.88523 -16.65743 -16.11268 -15.96904 -15.54468 -15.46463 -15.25744 -15.05487 -14.95433 -14.83690 -14.33158 -14.31218 -13.82611 -13.76083 -13.67183 -13.22471 -12.97620 -12.89841 -12.80555 -12.77350 -12.54548 -12.46721 -12.38094 -12.16521 -11.95762 -11.87204 -11.78922 -11.48698 -11.05990 -10.90894 -10.64265 -10.54950 -9.92655 -9.65815 -9.24485 -8.31874 -6.35187 -0.72632 0.05898 0.26444 0.93095 1.27825 1.35119 1.37319 1.47366 1.77305 2.31967 2.55017 2.76022 2.82203 3.03797 3.10760 3.28547 3.82898 3.93095 4.03287 4.03995 4.11936 4.16889 4.29416 4.37178 4.37665 4.41209 4.47716 4.56564 4.67723 4.68624 4.77155 4.81914 4.85359 4.90153 4.96627 5.10398 5.14278 5.19574 5.24526 5.28698 5.39863 5.50741 5.57947 5.59527 5.69532 5.71810 6.02468 6.29335 6.48482 6.70662 6.92999 7.05181 7.30259 8.85035 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010737 B = 0.003782 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.094635 B = 7402.417987 C = 9136.781605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.372 3.628 3 O -0.460 6.460 4 C -0.146 4.146 5 C -0.050 4.050 6 C -0.089 4.089 7 C 0.011 3.989 8 C 0.203 3.797 9 N -0.302 5.302 10 N -0.059 5.059 11 N -0.196 5.196 12 H 0.496 0.504 13 N -0.277 5.277 14 C -0.133 4.133 15 C 0.129 3.871 16 N -0.498 5.498 17 C 0.073 3.927 18 C -0.110 4.110 19 C -0.120 4.120 20 C 0.026 3.974 21 H 0.020 0.980 22 C -0.519 4.519 23 H 0.032 0.968 24 C 0.017 3.983 25 N -0.948 5.948 26 Si 0.949 3.051 27 H -0.263 1.263 28 H -0.297 1.297 29 H -0.254 1.254 30 C 0.101 3.899 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.190 0.810 35 H 0.168 0.832 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.036 0.964 39 H 0.059 0.941 40 H 0.087 0.913 41 H 0.037 0.963 42 H 0.052 0.948 43 H 0.266 0.734 44 H 0.022 0.978 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.161 -20.204 13.772 31.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.250 3.750 3 O -0.335 6.335 4 C -0.148 4.148 5 C -0.068 4.068 6 C -0.109 4.109 7 C 0.007 3.993 8 C -0.077 4.077 9 N -0.174 5.174 10 N -0.053 5.053 11 N -0.047 5.047 12 H 0.356 0.644 13 N -0.130 5.130 14 C -0.156 4.156 15 C 0.034 3.966 16 N -0.219 5.219 17 C -0.053 4.053 18 C -0.148 4.148 19 C -0.158 4.158 20 C 0.006 3.994 21 H 0.038 0.962 22 C -0.558 4.558 23 H 0.050 0.950 24 C -0.180 4.180 25 N -0.589 5.589 26 Si 0.777 3.223 27 H -0.189 1.189 28 H -0.224 1.224 29 H -0.178 1.178 30 C -0.025 4.025 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.134 0.866 34 H 0.207 0.793 35 H 0.185 0.815 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.078 0.922 40 H 0.106 0.894 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.041 0.959 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -18.484 -19.540 13.671 30.172 hybrid contribution 1.243 -0.158 -0.333 1.297 sum -17.241 -19.698 13.338 29.380 Atomic orbital electron populations 1.22283 0.90188 1.05483 1.06648 1.22962 0.93177 0.87035 0.71862 1.90696 1.73024 1.35014 1.34768 1.21083 0.92022 0.97111 1.04631 1.21472 1.02361 0.88650 0.94315 1.21134 0.90755 1.00663 0.98357 1.17466 0.93490 0.85728 1.02653 1.23822 0.88004 0.93296 1.02548 1.76188 1.15362 1.07137 1.18682 1.78908 1.11324 0.99866 1.15240 1.47827 1.00172 1.13319 1.43381 0.64424 1.74859 1.17980 0.98744 1.21395 1.21720 1.00602 0.92146 1.01088 1.19149 0.93350 0.87989 0.96108 1.59319 1.28846 1.30721 1.02979 1.22050 0.95292 0.96915 0.91002 1.21590 0.98545 0.96896 0.97781 1.21905 0.98413 0.99617 0.95839 1.18995 0.93837 0.93859 0.92663 0.96189 1.21276 1.26103 0.99710 1.08687 0.94967 1.25781 0.94257 1.01230 0.96722 1.70038 1.30787 1.28575 1.29455 0.85824 0.80050 0.77834 0.78632 1.18865 1.22432 1.17846 1.21762 0.92935 0.97281 0.90517 0.85989 0.90641 0.86646 0.79286 0.81459 0.86488 0.89628 0.94601 0.92209 0.89423 0.94489 0.92905 0.92478 0.95933 0.93344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 8.91 71.24 0.64 -1.78 16 2 C 0.37 9.35 7.21 27.85 0.20 9.56 16 3 O -0.46 -16.90 15.75 -3.20 -0.05 -16.95 16 4 C -0.15 -3.48 5.89 -20.03 -0.12 -3.60 16 5 C -0.05 -0.70 9.40 22.30 0.21 -0.49 16 6 C -0.09 -1.39 9.61 22.20 0.21 -1.18 16 7 C 0.01 0.25 5.88 -20.01 -0.12 0.13 16 8 C 0.20 4.79 7.93 137.32 1.09 5.88 16 9 N -0.30 -8.33 12.21 -52.21 -0.64 -8.96 16 10 N -0.06 -1.26 13.47 37.02 0.50 -0.76 16 11 N -0.20 -2.58 7.90 37.02 0.29 -2.29 16 12 H 0.50 1.09 8.96 -347.52 -3.12 -2.03 16 13 N -0.28 -4.77 12.06 -52.16 -0.63 -5.40 16 14 C -0.13 -3.90 8.31 22.59 0.19 -3.71 16 15 C 0.13 4.02 4.67 38.79 0.18 4.20 16 16 N -0.50 -18.76 2.54 -694.61 -1.77 -20.52 16 17 C 0.07 2.49 5.16 86.32 0.45 2.93 16 18 C -0.11 -4.03 6.09 30.64 0.19 -3.85 16 19 C -0.12 -5.45 4.73 30.68 0.15 -5.31 16 20 C 0.03 1.32 1.85 -11.49 -0.02 1.30 16 21 H 0.02 1.10 7.21 -2.39 -0.02 1.09 16 22 C -0.52 -31.67 9.15 25.60 0.23 -31.43 16 23 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 24 C 0.02 1.06 5.45 84.66 0.46 1.52 16 25 N -0.95 -61.83 13.96 21.45 0.30 -61.53 16 26 Si 0.95 48.32 24.35 68.60 1.67 49.99 16 27 H -0.26 -12.57 6.89 99.48 0.69 -11.88 16 28 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 29 H -0.25 -12.56 6.53 99.48 0.65 -11.91 16 30 C 0.10 4.57 4.33 86.32 0.37 4.94 16 31 H 0.12 0.74 8.08 -2.39 -0.02 0.72 16 32 H 0.07 1.12 8.12 -2.38 -0.02 1.10 16 33 H 0.12 0.89 8.08 -2.39 -0.02 0.88 16 34 H 0.19 0.78 7.02 -2.91 -0.02 0.76 16 35 H 0.17 1.59 7.86 -2.91 -0.02 1.57 16 36 H 0.12 3.91 6.92 -2.91 -0.02 3.89 16 37 H 0.09 2.53 8.10 -2.39 -0.02 2.51 16 38 H 0.04 1.20 7.52 -2.39 -0.02 1.18 16 39 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 40 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.04 1.74 3.34 -2.39 -0.01 1.73 16 42 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.27 16.22 8.31 -92.71 -0.77 15.45 16 44 H 0.02 1.04 7.33 -2.38 -0.02 1.02 16 45 H 0.05 2.30 8.10 -2.39 -0.02 2.28 16 Total: -1.00 -85.55 364.71 1.84 -83.71 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -2.15 Total: 3.61 kcal Atomic # 6 Polarization: -25.20 SS G_CDS: 4.31 Total: -20.90 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -1.94 Total: -99.47 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -0.05 Total: -16.95 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 1.67 Total: 49.99 kcal Total: -85.55 1.84 -83.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602969341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.042 kcal (2) G-P(sol) polarization free energy of solvation -85.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds