Wall clock time and date at job start Sat Apr 11 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08995 * 109.47066 * 2 1 4 4 C 1.53002 * 109.46950 * 120.00182 * 2 1 3 5 5 C 1.50702 * 109.46901 * 294.99923 * 4 2 1 6 6 C 1.38311 * 119.88406 * 269.72419 * 5 4 2 7 7 C 1.38024 * 120.11889 * 179.76529 * 6 5 4 8 8 C 1.39302 * 119.88245 * 0.53537 * 7 6 5 9 9 C 1.48460 * 120.11781 * 179.74296 * 8 7 6 10 10 N 1.34052 * 126.67205 * 179.97438 * 9 8 7 11 11 N 1.28985 * 107.26574 * 179.97438 * 10 9 8 12 12 N 1.28733 * 108.94640 * 359.97438 * 11 10 9 13 13 H 0.96996 * 125.33713 * 179.97438 * 12 11 10 14 14 N 1.28867 * 109.31545 * 359.75091 * 12 11 10 15 15 C 1.39302 * 119.76180 * 359.71780 * 8 7 6 16 16 C 1.38025 * 119.88147 * 0.02562 * 15 8 7 17 17 C 1.50698 * 109.47333 * 239.99862 * 2 1 3 18 18 O 1.21291 * 120.00356 * 260.19191 * 17 2 1 19 19 N 1.34776 * 120.00183 * 80.18773 * 17 2 1 20 20 C 1.37093 * 120.00586 * 185.04839 * 19 17 2 21 21 H 1.08004 * 119.99454 * 330.91551 * 20 19 17 22 22 C 1.38944 * 120.00348 * 150.91699 * 20 19 17 23 23 N 1.31409 * 120.00232 * 348.57984 * 22 20 19 24 24 Si 1.86802 * 120.00079 * 168.58743 * 22 20 19 25 25 H 1.48501 * 109.47204 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47291 * 119.99629 * 24 22 20 27 27 H 1.48497 * 109.47101 * 239.99847 * 24 22 20 28 28 C 1.46504 * 119.99478 * 5.32305 * 19 17 2 29 29 C 1.52998 * 117.49776 * 136.03700 * 28 19 17 30 30 C 1.52998 * 117.50214 * 67.37562 * 28 19 17 31 31 H 1.09002 * 109.47442 * 185.79928 * 1 2 3 32 32 H 1.08995 * 109.47479 * 305.80552 * 1 2 3 33 33 H 1.09007 * 109.46871 * 65.80512 * 1 2 3 34 34 H 1.09007 * 109.47041 * 54.99815 * 4 2 1 35 35 H 1.08999 * 109.47459 * 175.00178 * 4 2 1 36 36 H 1.07999 * 119.93913 * 0.02562 * 6 5 4 37 37 H 1.08006 * 120.05926 * 180.24911 * 7 6 5 38 38 H 1.08005 * 120.05639 * 180.02562 * 15 8 7 39 39 H 1.08002 * 119.93749 * 179.97438 * 16 15 8 40 40 H 0.96996 * 120.00527 * 185.03261 * 23 22 20 41 41 H 1.09000 * 115.55156 * 281.70144 * 28 19 17 42 42 H 1.09005 * 117.49753 * 0.02562 * 29 28 19 43 43 H 1.08999 * 117.49881 * 145.01444 * 29 28 19 44 44 H 1.08995 * 117.50141 * 214.97886 * 30 28 19 45 45 H 1.09005 * 117.49190 * 359.97438 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6412 0.0570 2.4766 6 6 2.4862 1.0290 2.9809 7 6 2.1237 1.7481 4.1018 8 6 0.9094 1.4857 4.7320 9 6 0.5169 2.2521 5.9414 10 7 -0.6136 2.1097 6.6475 11 7 -0.5688 2.9589 7.6174 12 7 0.5344 3.6183 7.5449 13 1 0.8114 4.3175 8.1574 14 7 1.2152 3.2004 6.5336 15 6 0.0645 0.5021 4.2230 16 6 0.4343 -0.2075 3.0984 17 6 2.0323 -0.7104 -1.2304 18 8 2.4032 -1.8629 -1.1564 19 7 2.0695 -0.0653 -2.4131 20 6 2.4277 -0.7403 -3.5513 21 1 3.1017 -1.5820 -3.4903 22 6 1.9238 -0.3416 -4.7833 23 7 0.9397 0.5274 -4.8406 24 14 2.6451 -1.0409 -6.3581 25 1 3.7351 -1.9924 -6.0235 26 1 1.5836 -1.7504 -7.1164 27 1 3.1905 0.0644 -7.1863 28 6 1.7328 1.3589 -2.4815 29 6 2.6348 2.2582 -3.3291 30 6 2.6861 2.3437 -1.8016 31 1 -0.3634 -1.0224 0.1038 32 1 -0.3634 0.6012 0.8334 33 1 -0.3633 0.4212 -0.9375 34 1 1.6052 -1.7199 1.2951 35 1 3.1262 -0.7995 1.2057 36 1 3.4294 1.2285 2.4941 37 1 2.7824 2.5097 4.4924 38 1 -0.8783 0.2950 4.7076 39 1 -0.2198 -0.9706 2.7032 40 1 0.5391 0.7508 -5.6952 41 1 0.6682 1.5920 -2.4588 42 1 3.4785 1.7901 -3.8363 43 1 2.1637 3.0830 -3.8637 44 1 2.2489 3.2247 -1.3320 45 1 3.5637 1.9318 -1.3032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603573857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:43 Heat of formation + Delta-G solvation = 139.550762 kcal Electronic energy + Delta-G solvation = -28876.551625 eV Core-core repulsion = 24897.983407 eV Total energy + Delta-G solvation = -3978.568218 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.67206 -39.70770 -38.77254 -36.27741 -35.04059 -34.37120 -33.30856 -32.80685 -31.18544 -31.05437 -30.28857 -26.86809 -25.39937 -24.92603 -24.05448 -22.67404 -22.27798 -21.47791 -21.28280 -20.60274 -19.43237 -18.34774 -17.36351 -16.94244 -16.80696 -16.16072 -15.32223 -15.10230 -14.98781 -14.55816 -14.30091 -14.13230 -13.72708 -13.53275 -13.47307 -13.32421 -12.95090 -12.73970 -12.49379 -12.03739 -12.00955 -11.64391 -11.60151 -11.47351 -11.33217 -11.20756 -11.11614 -10.97527 -10.86020 -10.69855 -10.62315 -10.49912 -10.39310 -10.27817 -9.72079 -9.36650 -8.98477 -8.82626 -8.54111 -8.21405 -7.59253 -6.27765 -3.87084 0.57799 0.99431 1.37278 1.99432 2.21632 3.16239 3.26737 3.32717 3.50031 3.75295 3.91550 3.99706 4.14589 4.69949 4.72801 4.87750 4.93324 4.98758 5.10022 5.16930 5.23245 5.38509 5.41902 5.50780 5.60694 5.66125 5.80112 5.84850 5.96303 5.97829 6.01150 6.09323 6.15489 6.26164 6.27866 6.28086 6.33722 6.36228 6.41405 6.61409 6.64912 6.75568 6.81084 6.89517 6.94349 7.17448 7.61837 7.91531 8.21327 8.53274 9.22501 9.45941 10.02951 10.79018 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025697 B = 0.002259 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.358071 B =12393.193646 C =12768.692551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 H 0.087 0.913 4 C -0.067 4.067 5 C -0.041 4.041 6 C -0.121 4.121 7 C -0.076 4.076 8 C -0.039 4.039 9 C 0.229 3.771 10 N -0.270 5.270 11 N -0.053 5.053 12 N -0.231 5.231 13 H 0.474 0.526 14 N -0.298 5.298 15 C -0.073 4.073 16 C -0.118 4.118 17 C 0.466 3.534 18 O -0.586 6.586 19 N -0.422 5.422 20 C -0.313 4.313 21 H 0.094 0.906 22 C 0.042 3.958 23 N -0.871 5.871 24 Si 0.916 3.084 25 H -0.269 1.269 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.132 3.868 29 C -0.139 4.139 30 C -0.226 4.226 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.266 0.734 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.495 8.647 19.144 21.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.104 4.104 5 C -0.042 4.042 6 C -0.139 4.139 7 C -0.096 4.096 8 C -0.042 4.042 9 C -0.051 4.051 10 N -0.144 5.144 11 N -0.048 5.048 12 N -0.076 5.076 13 H 0.328 0.672 14 N -0.150 5.150 15 C -0.093 4.093 16 C -0.136 4.136 17 C 0.255 3.745 18 O -0.470 6.470 19 N -0.140 5.140 20 C -0.440 4.440 21 H 0.112 0.888 22 C -0.163 4.163 23 N -0.509 5.509 24 Si 0.743 3.257 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.207 1.207 28 C 0.027 3.973 29 C -0.176 4.176 30 C -0.264 4.264 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.786 8.381 19.504 21.243 hybrid contribution 0.641 0.333 -0.907 1.160 sum -0.145 8.714 18.597 20.538 Atomic orbital electron populations 1.21732 0.93769 1.01931 1.02092 1.21171 0.97212 1.00506 0.93088 0.89444 1.20529 1.01837 0.98456 0.89619 1.20291 0.93527 0.94801 0.95555 1.21035 1.00408 0.96266 0.96240 1.21091 0.94713 0.98791 0.94994 1.17177 0.96801 0.98182 0.92040 1.23801 0.88655 0.94646 0.97955 1.76091 1.19983 1.16215 1.02065 1.78898 1.05671 1.02902 1.17311 1.47716 1.11273 1.28346 1.20284 0.67174 1.74940 1.23287 1.15326 1.01425 1.21132 0.98921 0.93758 0.95486 1.21083 0.96660 1.00518 0.95325 1.19997 0.83182 0.86742 0.84616 1.90512 1.52576 1.18294 1.85634 1.43033 1.58968 1.05726 1.06262 1.19527 1.27101 1.14141 0.83249 0.88798 1.25268 0.95397 0.96416 0.99198 1.69864 1.22099 1.32804 1.26103 0.86016 0.79195 0.78755 0.81697 1.19342 1.20791 1.20743 1.21032 0.94538 0.80028 1.01716 1.22692 1.02549 1.01336 0.91065 1.23553 1.03365 1.02375 0.97121 0.92582 0.92461 0.91886 0.89896 0.90587 0.85179 0.85277 0.84911 0.84977 0.92402 0.87965 0.89127 0.89841 0.89583 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 8.51 37.16 0.32 -1.90 16 2 C -0.10 -1.72 2.02 -91.77 -0.19 -1.90 16 3 H 0.09 1.45 5.78 -51.93 -0.30 1.15 16 4 C -0.07 -1.02 4.22 -27.88 -0.12 -1.14 16 5 C -0.04 -0.52 4.72 -104.57 -0.49 -1.01 16 6 C -0.12 -1.40 9.68 -39.63 -0.38 -1.79 16 7 C -0.08 -0.83 9.70 -39.26 -0.38 -1.21 16 8 C -0.04 -0.45 5.88 -104.89 -0.62 -1.06 16 9 C 0.23 2.66 7.94 -156.30 -1.24 1.42 16 10 N -0.27 -3.26 12.23 32.16 0.39 -2.87 16 11 N -0.05 -0.52 13.47 60.35 0.81 0.29 16 12 N -0.23 -1.67 7.90 60.35 0.48 -1.19 16 13 H 0.47 1.05 8.96 -340.37 -3.05 -2.00 16 14 N -0.30 -2.96 12.08 32.17 0.39 -2.57 16 15 C -0.07 -0.82 9.70 -39.26 -0.38 -1.20 16 16 C -0.12 -1.37 8.09 -39.63 -0.32 -1.70 16 17 C 0.47 10.87 6.71 -10.99 -0.07 10.80 16 18 O -0.59 -15.68 15.88 5.55 0.09 -15.59 16 19 N -0.42 -10.34 2.91 -107.73 -0.31 -10.65 16 20 C -0.31 -8.47 8.69 -14.94 -0.13 -8.60 16 21 H 0.09 2.71 7.49 -52.48 -0.39 2.31 16 22 C 0.04 1.08 4.58 -17.47 -0.08 1.00 16 23 N -0.87 -22.45 10.94 55.50 0.61 -21.84 16 24 Si 0.92 20.48 29.57 -169.99 -5.03 15.45 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 C 0.13 2.82 3.05 -67.93 -0.21 2.61 16 29 C -0.14 -2.79 8.53 -26.69 -0.23 -3.02 16 30 C -0.23 -3.95 8.58 -26.69 -0.23 -4.18 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.78 6.66 -51.93 -0.35 0.43 16 33 H 0.06 1.11 7.07 -51.93 -0.37 0.75 16 34 H 0.08 1.33 8.00 -51.93 -0.42 0.91 16 35 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.13 1.23 7.88 -52.48 -0.41 0.82 16 38 H 0.13 1.36 7.89 -52.48 -0.41 0.95 16 39 H 0.13 1.41 8.03 -52.49 -0.42 0.98 16 40 H 0.27 6.56 8.32 -40.82 -0.34 6.22 16 41 H 0.10 2.25 7.41 -51.93 -0.38 1.86 16 42 H 0.09 1.98 7.73 -51.93 -0.40 1.58 16 43 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 376.84 15.07 5.68 5.68 Total: -1.00 -32.06 376.84 -10.22 -42.29 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -8.58 Total: 3.89 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -4.75 Total: -12.88 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 2.37 Total: -38.84 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: 0.09 Total: -15.59 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.06 -10.22 -42.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603573857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.836 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds