Wall clock time and date at job start Sat Apr 11 2020 06:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45201 * 109.47006 * 2 1 4 4 C 1.34229 * 117.00038 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99611 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00220 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.69811 * 2.69305 * 6 4 3 8 8 C 1.53190 * 109.58457 * 242.34287 * 6 4 3 9 9 C 1.53044 * 109.31131 * 185.57595 * 8 6 4 10 10 C 1.53042 * 109.53697 * 61.36449 * 9 8 6 11 11 C 1.53188 * 109.31298 * 298.63614 * 10 9 8 12 12 N 1.46921 * 109.58603 * 123.05197 * 6 4 3 13 13 C 1.34769 * 120.63553 * 353.41899 * 12 6 4 14 14 O 1.21288 * 119.99876 * 4.56286 * 13 12 6 15 15 C 1.50702 * 120.00548 * 184.56319 * 13 12 6 16 16 O 1.45199 * 109.47563 * 179.97438 * 15 13 12 17 17 C 1.34222 * 117.00275 * 179.97438 * 16 15 13 18 18 O 1.20825 * 119.99943 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00432 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.47417 * 59.99473 * 19 17 16 21 21 C 1.53003 * 109.46916 * 300.00041 * 19 17 16 22 22 C 1.50700 * 109.47387 * 180.02562 * 19 17 16 23 23 H 1.07994 * 119.99908 * 35.21549 * 22 19 17 24 24 C 1.37877 * 119.99942 * 215.21894 * 22 19 17 25 25 N 1.31508 * 119.99884 * 185.90341 * 24 22 19 26 26 Si 1.86802 * 119.99918 * 5.90183 * 24 22 19 27 27 H 1.48497 * 109.47144 * 89.71137 * 26 24 22 28 28 H 1.48504 * 109.47045 * 209.71418 * 26 24 22 29 29 H 1.48506 * 109.47285 * 329.71214 * 26 24 22 30 30 H 1.08989 * 109.46829 * 300.00027 * 1 2 3 31 31 H 1.09003 * 109.46520 * 59.99999 * 1 2 3 32 32 H 1.08997 * 109.46930 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46828 * 240.00204 * 2 1 3 34 34 H 1.08994 * 109.46790 * 119.99962 * 2 1 3 35 35 H 1.08995 * 109.49933 * 305.52846 * 8 6 4 36 36 H 1.08999 * 109.49905 * 65.62558 * 8 6 4 37 37 H 1.09007 * 109.46059 * 301.34284 * 9 8 6 38 38 H 1.09004 * 109.45901 * 181.38811 * 9 8 6 39 39 H 1.09005 * 109.49404 * 178.68344 * 10 9 8 40 40 H 1.09000 * 109.51995 * 58.60707 * 10 9 8 41 41 H 1.09010 * 109.58736 * 294.84751 * 11 10 9 42 42 H 1.09003 * 109.58668 * 174.42503 * 11 10 9 43 43 H 1.08997 * 109.46790 * 300.00156 * 15 13 12 44 44 H 1.09002 * 109.46777 * 59.99458 * 15 13 12 45 45 H 1.09006 * 109.46803 * 305.06380 * 21 19 17 46 46 H 1.09003 * 109.47414 * 65.05888 * 21 19 17 47 47 H 1.08992 * 109.47478 * 185.06487 * 21 19 17 48 48 H 0.97009 * 119.99779 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.1140 3.6687 0.0491 8 6 4.7355 3.1566 -1.2786 9 6 5.4308 4.5182 -1.2086 10 6 6.3886 4.5430 -0.0152 11 6 5.5926 4.3394 1.2777 12 7 4.8072 3.1033 1.1599 13 6 4.8986 2.1398 2.0977 14 8 4.3100 1.0899 1.9479 15 6 5.7321 2.3667 3.3326 16 8 5.6693 1.1906 4.1819 17 6 6.3632 1.2304 5.3301 18 8 7.0016 2.2155 5.6164 19 6 6.3462 0.0464 6.2623 20 1 6.7414 -0.8284 5.7459 21 6 4.9091 -0.2308 6.7083 22 6 7.1975 0.3451 7.4694 23 1 7.2341 1.3475 7.8696 24 6 7.9295 -0.6614 8.0628 25 7 8.5797 -0.4293 9.1821 26 14 7.9977 -2.3546 7.2768 27 1 9.1388 -2.4145 6.3284 28 1 8.1769 -3.3835 8.3326 29 1 6.7315 -2.6119 6.5447 30 1 -0.3632 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.4843 2.3702 -1.3722 36 1 4.0710 3.1315 -2.1423 37 1 4.6828 5.3023 -1.0902 38 1 5.9914 4.6874 -2.1279 39 1 6.9007 5.5046 0.0203 40 1 7.1223 3.7438 -0.1205 41 1 4.9222 5.1852 1.4310 42 1 6.2792 4.2573 2.1204 43 1 6.7666 2.5519 3.0437 44 1 5.3471 3.2288 3.8773 45 1 4.4832 0.6730 7.1442 46 1 4.3135 -0.5342 5.8473 47 1 4.9066 -1.0284 7.4511 48 1 9.0950 -1.1373 9.5994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647271017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:57 Heat of formation + Delta-G solvation = -194.180094 kcal Electronic energy + Delta-G solvation = -31191.265539 eV Core-core repulsion = 26826.331243 eV Total energy + Delta-G solvation = -4364.934296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.39421 -39.87394 -39.24354 -37.66137 -36.44487 -35.65788 -33.81898 -33.39442 -32.41580 -31.52499 -31.37349 -28.72950 -26.17756 -25.29827 -24.62346 -23.38955 -22.91798 -21.45474 -21.26157 -19.73569 -19.25956 -18.12401 -17.35199 -17.17342 -16.74118 -16.40862 -16.29287 -16.15418 -15.78033 -15.26708 -15.17195 -14.72201 -14.33409 -14.21150 -13.99511 -13.81459 -13.61757 -13.30405 -13.16013 -12.83421 -12.78432 -12.57466 -12.22510 -12.16073 -12.03301 -11.93537 -11.66691 -11.62440 -11.32982 -11.29632 -11.16521 -11.12178 -10.82552 -10.58488 -10.39574 -10.25746 -10.23989 -9.86383 -9.46110 -9.26085 -9.20985 -9.04084 -8.63810 -6.16200 -4.17740 1.90766 2.30895 2.56212 2.72967 3.13551 3.25877 3.33723 3.35288 3.51221 4.16015 4.27805 4.33443 4.38047 4.49079 4.52144 4.65372 4.72548 4.81073 4.88844 4.93310 5.06936 5.14788 5.16920 5.17614 5.20099 5.26255 5.32058 5.42685 5.50381 5.57002 5.60018 5.64901 5.77498 5.81596 5.85630 6.03376 6.18883 6.49020 6.49910 6.53009 6.80926 6.91897 7.03668 7.21032 7.48068 7.78846 8.05378 8.36484 8.71460 8.96288 9.41816 10.95941 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.003067 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.399711 B = 9126.265833 C =10619.881212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.067 3.933 3 O -0.363 6.363 4 C 0.467 3.533 5 O -0.468 6.468 6 C 0.161 3.839 7 H 0.104 0.896 8 C -0.125 4.125 9 C -0.116 4.116 10 C -0.140 4.140 11 C 0.107 3.893 12 N -0.609 5.609 13 C 0.511 3.489 14 O -0.485 6.485 15 C 0.049 3.951 16 O -0.345 6.345 17 C 0.464 3.536 18 O -0.502 6.502 19 C 0.025 3.975 20 H 0.068 0.932 21 C -0.133 4.133 22 C -0.506 4.506 23 H 0.088 0.912 24 C 0.077 3.923 25 N -0.888 5.888 26 Si 0.867 3.133 27 H -0.273 1.273 28 H -0.282 1.282 29 H -0.259 1.259 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.048 0.952 46 H 0.039 0.961 47 H 0.061 0.939 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.471 10.121 -24.125 28.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.007 4.007 3 O -0.281 6.281 4 C 0.307 3.693 5 O -0.352 6.352 6 C 0.057 3.943 7 H 0.122 0.878 8 C -0.164 4.164 9 C -0.153 4.153 10 C -0.178 4.178 11 C -0.015 4.015 12 N -0.349 5.349 13 C 0.299 3.701 14 O -0.357 6.357 15 C -0.028 4.028 16 O -0.262 6.262 17 C 0.308 3.692 18 O -0.388 6.388 19 C 0.005 3.995 20 H 0.086 0.914 21 C -0.191 4.191 22 C -0.543 4.543 23 H 0.106 0.894 24 C -0.126 4.126 25 N -0.524 5.524 26 Si 0.693 3.307 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.183 1.183 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.067 0.933 46 H 0.058 0.942 47 H 0.080 0.920 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.265 9.412 -23.940 28.498 hybrid contribution 0.378 -0.782 -0.313 0.923 sum -11.887 8.630 -24.253 28.354 Atomic orbital electron populations 1.21800 0.92874 1.02879 1.03231 1.22959 0.94829 0.80063 1.02816 1.86387 1.24326 1.32660 1.84728 1.22661 0.81081 0.91660 0.73886 1.90708 1.59952 1.42487 1.42050 1.20644 0.92975 0.92926 0.87804 0.87842 1.21915 1.00014 0.99495 0.94928 1.21502 0.98785 0.96167 0.98882 1.21980 0.98398 1.03296 0.94145 1.21912 0.94657 0.85629 0.99327 1.47908 1.45525 1.19696 1.21794 1.20460 0.82411 0.83291 0.83970 1.90905 1.44545 1.24591 1.75658 1.22467 1.00601 0.89915 0.89846 1.86738 1.67752 1.39493 1.32233 1.25437 0.74218 0.91043 0.78548 1.90537 1.40174 1.34310 1.73741 1.19254 0.97208 0.90306 0.92686 0.91379 1.21909 0.95671 1.01437 1.00087 1.20734 1.26197 0.98780 1.08636 0.89384 1.24977 0.94472 0.98484 0.94635 1.69874 1.31351 1.33767 1.17442 0.86988 0.79518 0.84459 0.79715 1.19856 1.20821 1.18302 0.91485 0.91783 0.90303 0.91657 0.90708 0.90011 0.89910 0.91131 0.90699 0.89840 0.90883 0.90318 0.88754 0.88750 0.88573 0.93318 0.94203 0.92024 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.29 37.16 0.38 -0.83 16 2 C 0.07 0.77 6.19 37.16 0.23 1.00 16 3 O -0.36 -4.70 10.22 -39.26 -0.40 -5.10 16 4 C 0.47 6.55 4.94 36.00 0.18 6.73 16 5 O -0.47 -8.32 13.65 -27.22 -0.37 -8.70 16 6 C 0.16 1.63 3.34 -68.76 -0.23 1.40 16 7 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 8 C -0.13 -0.94 5.33 -26.61 -0.14 -1.09 16 9 C -0.12 -0.60 5.88 -26.69 -0.16 -0.75 16 10 C -0.14 -0.82 6.08 -26.61 -0.16 -0.98 16 11 C 0.11 0.77 6.33 -3.71 -0.02 0.75 16 12 N -0.61 -6.79 2.97 -166.53 -0.49 -7.29 16 13 C 0.51 7.97 7.59 -10.99 -0.08 7.89 16 14 O -0.48 -9.53 11.62 -26.18 -0.30 -9.83 16 15 C 0.05 0.79 4.34 36.01 0.16 0.94 16 16 O -0.34 -7.18 9.68 -45.88 -0.44 -7.63 16 17 C 0.46 10.86 7.25 36.00 0.26 11.13 16 18 O -0.50 -12.59 15.52 -18.75 -0.29 -12.88 16 19 C 0.03 0.62 2.41 -92.92 -0.22 0.40 16 20 H 0.07 1.66 5.12 -51.93 -0.27 1.40 16 21 C -0.13 -2.89 9.10 37.16 0.34 -2.55 16 22 C -0.51 -14.52 8.35 -34.44 -0.29 -14.80 16 23 H 0.09 2.81 7.62 -52.49 -0.40 2.41 16 24 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 25 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 26 Si 0.87 21.11 27.18 -169.99 -4.62 16.49 16 27 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 H -0.26 -5.97 6.55 56.52 0.37 -5.59 16 30 H 0.07 0.55 8.14 -51.94 -0.42 0.13 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.70 8.13 -51.93 -0.42 0.28 16 34 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 35 H 0.08 0.79 8.01 -51.93 -0.42 0.37 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 42 H 0.09 0.69 5.96 -51.93 -0.31 0.38 16 43 H 0.09 1.36 7.49 -51.93 -0.39 0.97 16 44 H 0.10 1.34 8.09 -51.93 -0.42 0.92 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 391.18 15.07 5.89 5.89 Total: -1.00 -37.39 391.18 -7.83 -45.21 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -7.71 Total: -1.34 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 0.14 Total: 11.36 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.28 Total: -33.48 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -1.81 Total: -44.14 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.62 Total: 16.49 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.39 -7.83 -45.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647271017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.966 kcal (2) G-P(sol) polarization free energy of solvation -37.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds