Wall clock time and date at job start Sat Apr 11 2020 06:22:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.45201 * 109.47006 * 2 1 4 4 C 1.34229 * 117.00038 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99611 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00220 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.69811 * 2.69305 * 6 4 3 8 8 C 1.53190 * 109.58457 * 242.34287 * 6 4 3 9 9 C 1.53044 * 109.31131 * 185.57595 * 8 6 4 10 10 C 1.53042 * 109.53697 * 61.36449 * 9 8 6 11 11 C 1.53188 * 109.31298 * 298.63614 * 10 9 8 12 12 N 1.46921 * 109.58603 * 123.05197 * 6 4 3 13 13 C 1.34769 * 120.63553 * 353.41899 * 12 6 4 14 14 O 1.21288 * 119.99876 * 4.56286 * 13 12 6 15 15 C 1.50702 * 120.00548 * 184.56319 * 13 12 6 16 16 O 1.45199 * 109.47563 * 179.97438 * 15 13 12 17 17 C 1.34222 * 117.00275 * 179.97438 * 16 15 13 18 18 O 1.20825 * 119.99943 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00432 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.47417 * 59.99473 * 19 17 16 21 21 C 1.53003 * 109.46916 * 300.00041 * 19 17 16 22 22 C 1.50700 * 109.47387 * 180.02562 * 19 17 16 23 23 H 1.07994 * 119.99908 * 35.21549 * 22 19 17 24 24 C 1.37877 * 119.99942 * 215.21894 * 22 19 17 25 25 N 1.31508 * 119.99884 * 185.90341 * 24 22 19 26 26 Si 1.86802 * 119.99918 * 5.90183 * 24 22 19 27 27 H 1.48497 * 109.47144 * 89.71137 * 26 24 22 28 28 H 1.48504 * 109.47045 * 209.71418 * 26 24 22 29 29 H 1.48506 * 109.47285 * 329.71214 * 26 24 22 30 30 H 1.08989 * 109.46829 * 300.00027 * 1 2 3 31 31 H 1.09003 * 109.46520 * 59.99999 * 1 2 3 32 32 H 1.08997 * 109.46930 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46828 * 240.00204 * 2 1 3 34 34 H 1.08994 * 109.46790 * 119.99962 * 2 1 3 35 35 H 1.08995 * 109.49933 * 305.52846 * 8 6 4 36 36 H 1.08999 * 109.49905 * 65.62558 * 8 6 4 37 37 H 1.09007 * 109.46059 * 301.34284 * 9 8 6 38 38 H 1.09004 * 109.45901 * 181.38811 * 9 8 6 39 39 H 1.09005 * 109.49404 * 178.68344 * 10 9 8 40 40 H 1.09000 * 109.51995 * 58.60707 * 10 9 8 41 41 H 1.09010 * 109.58736 * 294.84751 * 11 10 9 42 42 H 1.09003 * 109.58668 * 174.42503 * 11 10 9 43 43 H 1.08997 * 109.46790 * 300.00156 * 15 13 12 44 44 H 1.09002 * 109.46777 * 59.99458 * 15 13 12 45 45 H 1.09006 * 109.46803 * 305.06380 * 21 19 17 46 46 H 1.09003 * 109.47414 * 65.05888 * 21 19 17 47 47 H 1.08992 * 109.47478 * 185.06487 * 21 19 17 48 48 H 0.97009 * 119.99779 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.1140 3.6687 0.0491 8 6 4.7355 3.1566 -1.2786 9 6 5.4308 4.5182 -1.2086 10 6 6.3886 4.5430 -0.0152 11 6 5.5926 4.3394 1.2777 12 7 4.8072 3.1033 1.1599 13 6 4.8986 2.1398 2.0977 14 8 4.3100 1.0899 1.9479 15 6 5.7321 2.3667 3.3326 16 8 5.6693 1.1906 4.1819 17 6 6.3632 1.2304 5.3301 18 8 7.0016 2.2155 5.6164 19 6 6.3462 0.0464 6.2623 20 1 6.7414 -0.8284 5.7459 21 6 4.9091 -0.2308 6.7083 22 6 7.1975 0.3451 7.4694 23 1 7.2341 1.3475 7.8696 24 6 7.9295 -0.6614 8.0628 25 7 8.5797 -0.4293 9.1821 26 14 7.9977 -2.3546 7.2768 27 1 9.1388 -2.4145 6.3284 28 1 8.1769 -3.3835 8.3326 29 1 6.7315 -2.6119 6.5447 30 1 -0.3632 0.5138 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 5.4843 2.3702 -1.3722 36 1 4.0710 3.1315 -2.1423 37 1 4.6828 5.3023 -1.0902 38 1 5.9914 4.6874 -2.1279 39 1 6.9007 5.5046 0.0203 40 1 7.1223 3.7438 -0.1205 41 1 4.9222 5.1852 1.4310 42 1 6.2792 4.2573 2.1204 43 1 6.7666 2.5519 3.0437 44 1 5.3471 3.2288 3.8773 45 1 4.4832 0.6730 7.1442 46 1 4.3135 -0.5342 5.8473 47 1 4.9066 -1.0284 7.4511 48 1 9.0950 -1.1373 9.5994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647271017.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:56 Heat of formation + Delta-G solvation = -217.428185 kcal Electronic energy + Delta-G solvation = -31192.273652 eV Core-core repulsion = 26826.331243 eV Total energy + Delta-G solvation = -4365.942409 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.42458 -41.49686 -40.39994 -38.63970 -37.58710 -37.29717 -35.85137 -34.22189 -33.49915 -33.16993 -32.23629 -29.95492 -27.35033 -27.01431 -25.33062 -25.01509 -23.85432 -22.50498 -21.99450 -21.51639 -20.18030 -19.35996 -19.17914 -18.42003 -18.05804 -17.80303 -17.62848 -17.52011 -16.79591 -16.69661 -16.27854 -15.98444 -15.38310 -15.20653 -15.05235 -14.88655 -14.62270 -14.58704 -14.39875 -14.12334 -13.93098 -13.78049 -13.70378 -13.52442 -13.09374 -13.01980 -12.83516 -12.74534 -12.67111 -12.47764 -12.31887 -12.20354 -11.89196 -11.82982 -11.80909 -11.71332 -11.52306 -11.37207 -11.26085 -11.14374 -10.81727 -10.59501 -9.92150 -8.36660 -6.45006 0.88724 1.18369 1.27369 1.34799 1.36810 1.45865 1.48424 1.66641 2.17643 2.28497 2.99874 3.21930 3.57192 3.67636 3.73623 3.88443 3.92403 3.97621 3.99195 4.00983 4.07065 4.09937 4.15877 4.29374 4.33513 4.40805 4.59918 4.61924 4.71958 4.76477 4.79100 4.82854 4.90414 4.95744 5.01117 5.07977 5.11940 5.19228 5.22762 5.31780 5.41443 5.42229 5.42925 5.54013 5.95443 6.16385 6.63125 6.71478 6.88888 6.98559 7.19018 8.79687 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012636 B = 0.003067 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.399711 B = 9126.265833 C =10619.881212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.061 3.939 3 O -0.364 6.364 4 C 0.460 3.540 5 O -0.513 6.513 6 C 0.158 3.842 7 H 0.138 0.862 8 C -0.120 4.120 9 C -0.109 4.109 10 C -0.138 4.138 11 C 0.096 3.904 12 N -0.598 5.598 13 C 0.507 3.493 14 O -0.534 6.534 15 C 0.044 3.956 16 O -0.351 6.351 17 C 0.472 3.528 18 O -0.527 6.527 19 C 0.017 3.983 20 H 0.076 0.924 21 C -0.126 4.126 22 C -0.515 4.515 23 H 0.039 0.961 24 C 0.023 3.977 25 N -0.936 5.936 26 Si 0.933 3.067 27 H -0.268 1.268 28 H -0.274 1.274 29 H -0.235 1.235 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.053 0.947 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.109 0.891 44 H 0.118 0.882 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.887 11.191 -26.743 32.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.013 4.013 3 O -0.281 6.281 4 C 0.303 3.697 5 O -0.400 6.400 6 C 0.054 3.946 7 H 0.155 0.845 8 C -0.159 4.159 9 C -0.147 4.147 10 C -0.176 4.176 11 C -0.024 4.024 12 N -0.336 5.336 13 C 0.295 3.705 14 O -0.410 6.410 15 C -0.033 4.033 16 O -0.268 6.268 17 C 0.316 3.684 18 O -0.415 6.415 19 C -0.002 4.002 20 H 0.093 0.907 21 C -0.184 4.184 22 C -0.553 4.553 23 H 0.058 0.942 24 C -0.176 4.176 25 N -0.574 5.574 26 Si 0.755 3.245 27 H -0.194 1.194 28 H -0.199 1.199 29 H -0.158 1.158 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.121 0.879 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.071 0.929 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.127 0.873 44 H 0.136 0.864 45 H 0.067 0.933 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.709 10.548 -26.606 31.734 hybrid contribution 0.790 -0.963 0.424 1.316 sum -12.918 9.585 -26.182 30.728 Atomic orbital electron populations 1.21798 0.89915 1.04291 1.03822 1.23111 0.97122 0.79510 1.01513 1.86401 1.24076 1.33305 1.84337 1.23530 0.81008 0.92864 0.72338 1.90678 1.60880 1.44333 1.44125 1.21055 0.93934 0.91207 0.88399 0.84484 1.21951 0.99500 1.00252 0.94156 1.21529 0.99074 0.94952 0.99118 1.21999 0.98089 1.03919 0.93598 1.22319 0.95167 0.84626 1.00278 1.47998 1.45180 1.19686 1.20736 1.20424 0.82054 0.83550 0.84508 1.90900 1.46699 1.26641 1.76790 1.22839 1.02040 0.88653 0.89747 1.86643 1.66747 1.41807 1.31605 1.24929 0.74027 0.90253 0.79142 1.90522 1.41352 1.35126 1.74527 1.19219 0.98195 0.91129 0.91679 0.90655 1.21804 0.93860 1.01703 1.01008 1.20759 1.27368 0.96804 1.10354 0.94238 1.25845 0.93823 1.03006 0.94896 1.70011 1.32674 1.35567 1.19180 0.85941 0.80615 0.78866 0.79101 1.19355 1.19893 1.15810 0.91751 0.90209 0.88515 0.91421 0.93655 0.92827 0.87934 0.88677 0.89269 0.87241 0.92888 0.87068 0.89007 0.87321 0.86395 0.93258 0.91984 0.91667 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 10.29 71.98 0.74 -1.34 16 2 C 0.06 1.42 6.19 71.98 0.45 1.87 16 3 O -0.36 -9.29 10.22 -51.41 -0.53 -9.81 16 4 C 0.46 12.86 4.94 71.24 0.35 13.21 16 5 O -0.51 -18.92 13.65 30.07 0.41 -18.51 16 6 C 0.16 2.88 3.34 44.23 0.15 3.02 16 7 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 8 C -0.12 -1.54 5.33 30.67 0.16 -1.38 16 9 C -0.11 -0.70 5.88 30.62 0.18 -0.52 16 10 C -0.14 -1.17 6.08 30.67 0.19 -0.99 16 11 C 0.10 1.11 6.33 86.36 0.55 1.65 16 12 N -0.60 -12.30 2.97 -799.18 -2.38 -14.68 16 13 C 0.51 15.60 7.59 87.66 0.67 16.27 16 14 O -0.53 -21.40 11.62 27.29 0.32 -21.08 16 15 C 0.04 1.37 4.34 71.24 0.31 1.68 16 16 O -0.35 -14.56 9.68 -44.98 -0.44 -14.99 16 17 C 0.47 22.20 7.25 71.23 0.52 22.72 16 18 O -0.53 -26.89 15.52 21.97 0.34 -26.55 16 19 C 0.02 0.85 2.41 -12.29 -0.03 0.82 16 20 H 0.08 3.59 5.12 -2.39 -0.01 3.58 16 21 C -0.13 -5.35 9.10 71.98 0.66 -4.69 16 22 C -0.52 -30.36 8.35 25.60 0.21 -30.15 16 23 H 0.04 2.65 7.62 -2.91 -0.02 2.63 16 24 C 0.02 1.36 5.47 84.66 0.46 1.82 16 25 N -0.94 -58.38 13.96 21.45 0.30 -58.08 16 26 Si 0.93 43.28 27.18 68.60 1.86 45.15 16 27 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 29 H -0.24 -9.95 6.55 99.48 0.65 -9.29 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 34 H 0.04 1.30 8.13 -2.39 -0.02 1.28 16 35 H 0.05 1.01 8.01 -2.39 -0.02 0.99 16 36 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.23 8.14 -2.38 -0.02 0.21 16 38 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 39 H 0.11 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.11 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.09 1.12 5.96 -2.39 -0.01 1.11 16 43 H 0.11 3.06 7.49 -2.39 -0.02 3.04 16 44 H 0.12 3.13 8.09 -2.39 -0.02 3.11 16 45 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 46 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 48 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -86.40 391.18 6.35 -80.05 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.90 Total: 14.52 kcal Atomic # 6 Polarization: 18.44 SS G_CDS: 5.56 Total: 23.99 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -2.08 Total: -72.76 kcal Atomic # 8 Polarization: -91.05 SS G_CDS: 0.11 Total: -90.95 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.86 Total: 45.15 kcal Total: -86.40 6.35 -80.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647271017.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.381 kcal (2) G-P(sol) polarization free energy of solvation -86.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds