Wall clock time and date at job start Sat Apr 11 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.46861 * 2 1 4 4 C 1.34225 * 117.00029 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00137 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00320 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.69846 * 7.18087 * 6 4 3 8 8 C 1.53630 * 109.66373 * 127.76665 * 6 4 3 9 9 C 1.53043 * 109.24004 * 174.55404 * 8 6 4 10 10 C 1.53036 * 109.53698 * 298.50978 * 9 8 6 11 11 C 1.53200 * 109.31237 * 61.36832 * 10 9 8 12 12 N 1.46918 * 109.59092 * 246.82281 * 6 4 3 13 13 C 1.34779 * 120.62932 * 6.62746 * 12 6 4 14 14 O 1.21278 * 120.00043 * 355.59339 * 13 12 6 15 15 C 1.50703 * 120.00011 * 175.59440 * 13 12 6 16 16 O 1.45195 * 109.47329 * 179.97438 * 15 13 12 17 17 C 1.34223 * 117.00188 * 180.02562 * 16 15 13 18 18 O 1.20827 * 120.00173 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00226 * 179.72701 * 17 16 15 20 20 H 1.09003 * 109.46778 * 300.27570 * 19 17 16 21 21 C 1.53002 * 109.47210 * 60.26883 * 19 17 16 22 22 C 1.50694 * 109.47385 * 180.27258 * 19 17 16 23 23 H 1.07999 * 119.99940 * 0.02562 * 22 19 17 24 24 C 1.37877 * 119.99968 * 179.97438 * 22 19 17 25 25 N 1.31520 * 120.00052 * 179.97438 * 24 22 19 26 26 Si 1.86791 * 120.00164 * 0.02562 * 24 22 19 27 27 H 1.48493 * 109.47668 * 89.99552 * 26 24 22 28 28 H 1.48506 * 109.47234 * 209.99948 * 26 24 22 29 29 H 1.48510 * 109.47253 * 329.99367 * 26 24 22 30 30 H 1.08997 * 109.46632 * 60.00112 * 1 2 3 31 31 H 1.09005 * 109.46706 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47358 * 300.00172 * 1 2 3 33 33 H 1.08997 * 109.47708 * 240.00241 * 2 1 3 34 34 H 1.08994 * 109.47018 * 119.99539 * 2 1 3 35 35 H 1.08998 * 109.62860 * 54.56431 * 8 6 4 36 36 H 1.08997 * 109.45754 * 294.44410 * 8 6 4 37 37 H 1.09003 * 109.45707 * 178.49499 * 9 8 6 38 38 H 1.08995 * 109.45815 * 58.53785 * 9 8 6 39 39 H 1.08998 * 109.50603 * 301.41735 * 10 9 8 40 40 H 1.09004 * 109.52421 * 181.33083 * 10 9 8 41 41 H 1.08995 * 109.58525 * 185.57310 * 11 10 9 42 42 H 1.08997 * 109.58248 * 65.14694 * 11 10 9 43 43 H 1.09003 * 109.46964 * 59.99905 * 15 13 12 44 44 H 1.08999 * 109.47261 * 299.99999 * 15 13 12 45 45 H 1.08992 * 109.47156 * 179.97438 * 21 19 17 46 46 H 1.08997 * 109.47055 * 300.00707 * 21 19 17 47 47 H 1.09003 * 109.46689 * 60.00632 * 21 19 17 48 48 H 0.96995 * 120.00120 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.1202 3.6663 0.1274 8 6 4.9365 3.0773 1.1440 9 6 5.6141 4.4464 1.0523 10 6 6.3666 4.5571 -0.2756 11 6 5.3716 4.4316 -1.4338 12 7 4.6130 3.1838 -1.2722 13 6 4.5487 2.2846 -2.2742 14 8 3.9826 1.2258 -2.1034 15 6 5.1803 2.5950 -3.6069 16 8 4.9770 1.4772 -4.5109 17 6 5.4830 1.5946 -5.7486 18 8 6.0757 2.5985 -6.0662 19 6 5.3167 0.4722 -6.7403 20 1 5.7809 -0.4321 -6.3467 21 6 3.8267 0.2184 -6.9782 22 6 5.9760 0.8498 -8.0417 23 1 6.4668 1.8067 -8.1406 24 6 5.9535 -0.0268 -9.1057 25 7 6.5285 0.3030 -10.2416 26 14 5.1053 -1.6821 -8.9343 27 1 3.6806 -1.5520 -9.3322 28 1 5.7756 -2.6751 -9.8119 29 1 5.1855 -2.1357 -7.5224 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 5.6889 2.2927 1.0635 36 1 4.4207 2.9898 2.1002 37 1 6.3164 4.5600 1.8782 38 1 4.8585 5.2300 1.1081 39 1 7.1056 3.7587 -0.3429 40 1 6.8686 5.5231 -0.3305 41 1 5.9127 4.4105 -2.3797 42 1 4.6871 5.2797 -1.4208 43 1 6.2488 2.7633 -3.4721 44 1 4.7216 3.4903 -4.0266 45 1 3.7064 -0.5931 -7.6958 46 1 3.3499 -0.0547 -6.0369 47 1 3.3625 1.1227 -7.3718 48 1 6.5124 -0.3135 -10.9903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647271018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:00 Heat of formation + Delta-G solvation = -194.825633 kcal Electronic energy + Delta-G solvation = -31220.117219 eV Core-core repulsion = 26855.154930 eV Total energy + Delta-G solvation = -4364.962289 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40544 -39.95923 -39.29486 -37.73029 -36.44693 -35.79042 -34.00613 -33.44369 -32.40487 -31.50977 -31.34497 -28.82032 -26.21087 -25.18387 -24.66236 -23.57116 -22.99686 -21.50161 -21.28558 -19.89084 -19.33426 -18.09746 -17.25569 -17.12529 -16.76823 -16.45871 -16.29708 -16.14211 -15.83027 -15.35478 -15.21822 -14.74899 -14.49045 -14.32843 -13.96501 -13.83792 -13.64879 -13.37974 -13.22574 -13.03567 -12.79813 -12.52891 -12.38487 -12.22404 -12.03581 -11.94034 -11.65420 -11.63899 -11.55684 -11.33431 -11.18671 -11.05712 -10.69354 -10.53477 -10.42435 -10.33794 -10.26754 -9.73353 -9.68090 -9.32740 -9.17666 -9.11826 -8.64590 -6.13149 -4.16099 1.86887 2.27970 2.53781 2.66968 3.05694 3.24135 3.34884 3.36327 3.42527 4.11373 4.25923 4.33802 4.37768 4.44342 4.48348 4.64023 4.71367 4.83349 4.90398 4.91931 5.03234 5.08205 5.13877 5.17280 5.19781 5.24285 5.30313 5.40861 5.51067 5.57057 5.60328 5.67235 5.69248 5.80549 5.85290 5.97535 6.17408 6.33073 6.40552 6.51600 6.70770 6.84647 6.98108 7.09806 7.45772 7.75664 7.95600 8.37265 8.62149 9.00798 9.43780 10.98954 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.003088 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.609761 B = 9064.824109 C =10841.399469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.068 3.932 3 O -0.362 6.362 4 C 0.476 3.524 5 O -0.487 6.487 6 C 0.159 3.841 7 H 0.104 0.896 8 C -0.124 4.124 9 C -0.116 4.116 10 C -0.140 4.140 11 C 0.106 3.894 12 N -0.607 5.607 13 C 0.514 3.486 14 O -0.486 6.486 15 C 0.052 3.948 16 O -0.343 6.343 17 C 0.476 3.524 18 O -0.502 6.502 19 C 0.028 3.972 20 H 0.066 0.934 21 C -0.146 4.146 22 C -0.519 4.519 23 H 0.095 0.905 24 C 0.076 3.924 25 N -0.891 5.891 26 Si 0.882 3.118 27 H -0.275 1.275 28 H -0.293 1.293 29 H -0.263 1.263 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.052 0.948 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.810 8.773 26.450 28.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.006 4.006 3 O -0.279 6.279 4 C 0.317 3.683 5 O -0.373 6.373 6 C 0.054 3.946 7 H 0.122 0.878 8 C -0.163 4.163 9 C -0.154 4.154 10 C -0.178 4.178 11 C -0.016 4.016 12 N -0.347 5.347 13 C 0.302 3.698 14 O -0.359 6.359 15 C -0.026 4.026 16 O -0.261 6.261 17 C 0.319 3.681 18 O -0.387 6.387 19 C 0.008 3.992 20 H 0.084 0.916 21 C -0.204 4.204 22 C -0.557 4.557 23 H 0.113 0.887 24 C -0.126 4.126 25 N -0.528 5.528 26 Si 0.711 3.289 27 H -0.202 1.202 28 H -0.220 1.220 29 H -0.188 1.188 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.098 0.902 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.692 8.110 26.238 28.519 hybrid contribution -0.296 -0.796 -0.095 0.855 sum -7.988 7.313 26.142 28.297 Atomic orbital electron populations 1.21800 0.92907 1.02863 1.03229 1.22948 0.94815 0.80040 1.02751 1.86380 1.24288 1.32688 1.84565 1.22570 0.81154 0.91519 0.73007 1.90669 1.60108 1.42382 1.44118 1.20810 0.95284 0.92911 0.85552 0.87848 1.21987 0.98387 0.99511 0.96377 1.21506 0.99846 0.96174 0.97869 1.21979 0.98158 1.03407 0.94247 1.21936 0.94203 0.85223 1.00261 1.48001 1.53031 1.21366 1.12320 1.20481 0.80470 0.83530 0.85304 1.90784 1.42199 1.22935 1.79990 1.22449 1.01853 0.90835 0.87436 1.86693 1.73293 1.42037 1.24028 1.24717 0.73990 0.89701 0.79665 1.90545 1.38905 1.31501 1.77759 1.19160 0.95818 0.91643 0.92563 0.91632 1.22095 0.96465 1.01599 1.00219 1.20896 1.35902 1.06022 0.92837 0.88696 1.24892 0.94909 0.97897 0.94919 1.69862 1.43590 1.36622 1.02747 0.86938 0.79362 0.84066 0.78517 1.20177 1.22032 1.18834 0.91464 0.90317 0.91815 0.90656 0.91726 0.89788 0.90011 0.90674 0.91164 0.90848 0.89800 0.88716 0.90219 0.88460 0.88300 0.92928 0.93454 0.92366 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.29 37.16 0.38 -0.89 16 2 C 0.07 0.80 6.19 37.16 0.23 1.03 16 3 O -0.36 -4.80 10.22 -42.06 -0.43 -5.23 16 4 C 0.48 6.67 4.49 36.01 0.16 6.84 16 5 O -0.49 -8.52 14.32 -26.94 -0.39 -8.91 16 6 C 0.16 1.59 3.37 -68.53 -0.23 1.36 16 7 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 8 C -0.12 -0.94 5.30 -26.38 -0.14 -1.08 16 9 C -0.12 -0.58 5.88 -26.69 -0.16 -0.74 16 10 C -0.14 -0.78 6.08 -26.61 -0.16 -0.94 16 11 C 0.11 0.73 6.33 -3.71 -0.02 0.70 16 12 N -0.61 -6.57 2.97 -166.28 -0.49 -7.06 16 13 C 0.51 7.77 7.65 -10.98 -0.08 7.68 16 14 O -0.49 -9.31 12.08 -27.07 -0.33 -9.64 16 15 C 0.05 0.79 4.33 36.01 0.16 0.95 16 16 O -0.34 -6.93 9.67 -45.88 -0.44 -7.37 16 17 C 0.48 10.88 7.25 36.01 0.26 11.14 16 18 O -0.50 -12.27 15.21 -18.75 -0.29 -12.55 16 19 C 0.03 0.68 2.33 -92.92 -0.22 0.46 16 20 H 0.07 1.59 7.20 -51.93 -0.37 1.21 16 21 C -0.15 -3.24 8.61 37.16 0.32 -2.92 16 22 C -0.52 -14.95 8.95 -34.44 -0.31 -15.26 16 23 H 0.10 3.04 7.00 -52.49 -0.37 2.68 16 24 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 25 N -0.89 -27.21 13.96 55.43 0.77 -26.44 16 26 Si 0.88 21.53 24.37 -169.99 -4.14 17.38 16 27 H -0.27 -6.48 6.87 56.52 0.39 -6.09 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.26 -6.14 6.53 56.52 0.37 -5.77 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 1.05 8.13 -51.93 -0.42 0.63 16 34 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 35 H 0.08 0.82 7.86 -51.93 -0.41 0.41 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.09 0.64 5.96 -51.93 -0.31 0.33 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 1.32 7.51 -51.93 -0.39 0.93 16 44 H 0.10 1.31 8.08 -51.93 -0.42 0.89 16 45 H 0.05 1.18 3.27 -51.93 -0.17 1.01 16 46 H 0.05 0.93 8.12 -51.93 -0.42 0.51 16 47 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 48 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -37.39 384.93 -7.38 -44.77 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.54 Total: -1.19 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 0.09 Total: 10.45 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.28 Total: -33.50 kcal Atomic # 8 Polarization: -41.83 SS G_CDS: -1.87 Total: -43.70 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.38 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.39 -7.38 -44.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647271018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.059 kcal (2) G-P(sol) polarization free energy of solvation -37.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds