Wall clock time and date at job start Sat Apr 11 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.46861 * 2 1 4 4 C 1.34225 * 117.00029 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00137 * 0.02562 * 4 3 2 6 6 C 1.50700 * 120.00320 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.69846 * 7.18087 * 6 4 3 8 8 C 1.53630 * 109.66373 * 127.76665 * 6 4 3 9 9 C 1.53043 * 109.24004 * 174.55404 * 8 6 4 10 10 C 1.53036 * 109.53698 * 298.50978 * 9 8 6 11 11 C 1.53200 * 109.31237 * 61.36832 * 10 9 8 12 12 N 1.46918 * 109.59092 * 246.82281 * 6 4 3 13 13 C 1.34779 * 120.62932 * 6.62746 * 12 6 4 14 14 O 1.21278 * 120.00043 * 355.59339 * 13 12 6 15 15 C 1.50703 * 120.00011 * 175.59440 * 13 12 6 16 16 O 1.45195 * 109.47329 * 179.97438 * 15 13 12 17 17 C 1.34223 * 117.00188 * 180.02562 * 16 15 13 18 18 O 1.20827 * 120.00173 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00226 * 179.72701 * 17 16 15 20 20 H 1.09003 * 109.46778 * 300.27570 * 19 17 16 21 21 C 1.53002 * 109.47210 * 60.26883 * 19 17 16 22 22 C 1.50694 * 109.47385 * 180.27258 * 19 17 16 23 23 H 1.07999 * 119.99940 * 0.02562 * 22 19 17 24 24 C 1.37877 * 119.99968 * 179.97438 * 22 19 17 25 25 N 1.31520 * 120.00052 * 179.97438 * 24 22 19 26 26 Si 1.86791 * 120.00164 * 0.02562 * 24 22 19 27 27 H 1.48493 * 109.47668 * 89.99552 * 26 24 22 28 28 H 1.48506 * 109.47234 * 209.99948 * 26 24 22 29 29 H 1.48510 * 109.47253 * 329.99367 * 26 24 22 30 30 H 1.08997 * 109.46632 * 60.00112 * 1 2 3 31 31 H 1.09005 * 109.46706 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47358 * 300.00172 * 1 2 3 33 33 H 1.08997 * 109.47708 * 240.00241 * 2 1 3 34 34 H 1.08994 * 109.47018 * 119.99539 * 2 1 3 35 35 H 1.08998 * 109.62860 * 54.56431 * 8 6 4 36 36 H 1.08997 * 109.45754 * 294.44410 * 8 6 4 37 37 H 1.09003 * 109.45707 * 178.49499 * 9 8 6 38 38 H 1.08995 * 109.45815 * 58.53785 * 9 8 6 39 39 H 1.08998 * 109.50603 * 301.41735 * 10 9 8 40 40 H 1.09004 * 109.52421 * 181.33083 * 10 9 8 41 41 H 1.08995 * 109.58525 * 185.57310 * 11 10 9 42 42 H 1.08997 * 109.58248 * 65.14694 * 11 10 9 43 43 H 1.09003 * 109.46964 * 59.99905 * 15 13 12 44 44 H 1.08999 * 109.47261 * 299.99999 * 15 13 12 45 45 H 1.08992 * 109.47156 * 179.97438 * 21 19 17 46 46 H 1.08997 * 109.47055 * 300.00707 * 21 19 17 47 47 H 1.09003 * 109.46689 * 60.00632 * 21 19 17 48 48 H 0.96995 * 120.00120 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0808 0.5868 0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.1202 3.6663 0.1274 8 6 4.9365 3.0773 1.1440 9 6 5.6141 4.4464 1.0523 10 6 6.3666 4.5571 -0.2756 11 6 5.3716 4.4316 -1.4338 12 7 4.6130 3.1838 -1.2722 13 6 4.5487 2.2846 -2.2742 14 8 3.9826 1.2258 -2.1034 15 6 5.1803 2.5950 -3.6069 16 8 4.9770 1.4772 -4.5109 17 6 5.4830 1.5946 -5.7486 18 8 6.0757 2.5985 -6.0662 19 6 5.3167 0.4722 -6.7403 20 1 5.7809 -0.4321 -6.3467 21 6 3.8267 0.2184 -6.9782 22 6 5.9760 0.8498 -8.0417 23 1 6.4668 1.8067 -8.1406 24 6 5.9535 -0.0268 -9.1057 25 7 6.5285 0.3030 -10.2416 26 14 5.1053 -1.6821 -8.9343 27 1 3.6806 -1.5520 -9.3322 28 1 5.7756 -2.6751 -9.8119 29 1 5.1855 -2.1357 -7.5224 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8935 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 5.6889 2.2927 1.0635 36 1 4.4207 2.9898 2.1002 37 1 6.3164 4.5600 1.8782 38 1 4.8585 5.2300 1.1081 39 1 7.1056 3.7587 -0.3429 40 1 6.8686 5.5231 -0.3305 41 1 5.9127 4.4105 -2.3797 42 1 4.6871 5.2797 -1.4208 43 1 6.2488 2.7633 -3.4721 44 1 4.7216 3.4903 -4.0266 45 1 3.7064 -0.5931 -7.6958 46 1 3.3499 -0.0547 -6.0369 47 1 3.3625 1.1227 -7.3718 48 1 6.5124 -0.3135 -10.9903 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647271018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:59 Heat of formation + Delta-G solvation = -218.713259 kcal Electronic energy + Delta-G solvation = -31221.153064 eV Core-core repulsion = 26855.154930 eV Total energy + Delta-G solvation = -4365.998134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.42551 -41.55046 -40.43539 -38.68274 -37.57755 -37.39151 -36.01708 -34.24469 -33.48885 -33.16030 -32.23698 -30.00461 -27.23037 -27.04535 -25.38734 -25.26115 -23.86069 -22.53528 -22.02287 -21.62280 -20.23304 -19.16739 -19.04529 -18.39451 -18.12192 -17.84952 -17.62983 -17.55877 -16.85036 -16.82054 -16.33114 -16.13225 -15.40769 -15.20193 -15.10184 -14.94210 -14.79689 -14.51963 -14.31524 -14.13777 -14.06432 -13.88666 -13.78091 -13.51129 -13.34523 -12.97802 -12.85371 -12.66342 -12.65314 -12.47402 -12.30146 -12.21575 -11.91914 -11.81751 -11.71580 -11.57049 -11.50896 -11.33786 -11.27473 -11.22211 -10.85174 -10.79982 -9.95979 -8.34977 -6.44773 0.85578 1.16350 1.24758 1.32801 1.37775 1.41621 1.47877 1.66851 2.15223 2.28455 2.97978 3.16663 3.54791 3.67555 3.72746 3.85845 3.90694 3.96476 3.97873 3.99583 4.01480 4.09877 4.16013 4.31121 4.33530 4.40504 4.48685 4.59365 4.64664 4.71503 4.78073 4.82669 4.89964 4.90275 4.96549 5.07849 5.11481 5.19296 5.19960 5.27458 5.30252 5.39672 5.41752 5.54584 5.92094 6.17439 6.66264 6.68735 6.83453 6.91304 7.19989 8.81243 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012796 B = 0.003088 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2187.609761 B = 9064.824109 C =10841.399469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 O -0.364 6.364 4 C 0.469 3.531 5 O -0.530 6.530 6 C 0.156 3.844 7 H 0.138 0.862 8 C -0.120 4.120 9 C -0.110 4.110 10 C -0.138 4.138 11 C 0.095 3.905 12 N -0.596 5.596 13 C 0.510 3.490 14 O -0.536 6.536 15 C 0.046 3.954 16 O -0.349 6.349 17 C 0.484 3.516 18 O -0.526 6.526 19 C 0.019 3.981 20 H 0.073 0.927 21 C -0.140 4.140 22 C -0.530 4.530 23 H 0.046 0.954 24 C 0.023 3.977 25 N -0.940 5.940 26 Si 0.947 3.053 27 H -0.256 1.256 28 H -0.292 1.292 29 H -0.243 1.243 30 H 0.061 0.939 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.122 0.878 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.058 0.942 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.482 9.783 28.868 31.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.011 4.011 3 O -0.281 6.281 4 C 0.313 3.687 5 O -0.419 6.419 6 C 0.052 3.948 7 H 0.155 0.845 8 C -0.158 4.158 9 C -0.147 4.147 10 C -0.176 4.176 11 C -0.025 4.025 12 N -0.334 5.334 13 C 0.298 3.702 14 O -0.413 6.413 15 C -0.030 4.030 16 O -0.266 6.266 17 C 0.328 3.672 18 O -0.414 6.414 19 C 0.000 4.000 20 H 0.090 0.910 21 C -0.197 4.197 22 C -0.568 4.568 23 H 0.064 0.936 24 C -0.176 4.176 25 N -0.578 5.578 26 Si 0.772 3.228 27 H -0.181 1.181 28 H -0.219 1.219 29 H -0.167 1.167 30 H 0.080 0.920 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.128 0.872 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.140 0.860 45 H 0.071 0.929 46 H 0.091 0.909 47 H 0.077 0.923 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.373 9.185 28.713 31.569 hybrid contribution 0.288 -0.979 -0.746 1.264 sum -9.085 8.206 27.967 30.529 Atomic orbital electron populations 1.21797 0.90057 1.04275 1.03726 1.23093 0.97039 0.79519 1.01480 1.86393 1.24211 1.33326 1.84209 1.23450 0.81005 0.92787 0.71480 1.90637 1.60972 1.44222 1.46059 1.21208 0.96672 0.91142 0.85770 0.84481 1.22019 0.97291 1.00388 0.96104 1.21530 1.00459 0.94859 0.97876 1.22000 0.97502 1.04098 0.93985 1.22350 0.94953 0.84152 1.01021 1.48099 1.52285 1.21532 1.11455 1.20467 0.80205 0.83612 0.85912 1.90776 1.44632 1.25023 1.80905 1.22832 1.03322 0.89923 0.86944 1.86608 1.72550 1.44109 1.23298 1.24239 0.73677 0.88836 0.80409 1.90531 1.40062 1.32307 1.78501 1.19079 0.97237 0.92479 0.91209 0.90969 1.21998 0.94446 1.01693 1.01538 1.20964 1.36150 1.04366 0.95304 0.93562 1.25783 0.95448 1.02207 0.94156 1.70008 1.45364 1.38544 1.03914 0.85881 0.78900 0.78461 0.79586 1.18131 1.21897 1.16716 0.91966 0.88483 0.90183 0.93713 0.91295 0.92715 0.88225 0.89319 0.88704 0.92822 0.87173 0.88772 0.86973 0.86934 0.86028 0.92892 0.90920 0.92327 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 10.29 71.98 0.74 -1.47 16 2 C 0.06 1.49 6.19 71.98 0.45 1.94 16 3 O -0.36 -9.57 10.22 -48.67 -0.50 -10.07 16 4 C 0.47 13.13 4.49 71.24 0.32 13.45 16 5 O -0.53 -19.27 14.32 29.79 0.43 -18.85 16 6 C 0.16 2.82 3.37 44.38 0.15 2.97 16 7 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 8 C -0.12 -1.56 5.30 30.82 0.16 -1.40 16 9 C -0.11 -0.69 5.88 30.62 0.18 -0.51 16 10 C -0.14 -1.10 6.08 30.67 0.19 -0.92 16 11 C 0.10 1.02 6.33 86.37 0.55 1.57 16 12 N -0.60 -11.86 2.97 -798.37 -2.37 -14.23 16 13 C 0.51 15.17 7.65 87.66 0.67 15.84 16 14 O -0.54 -20.94 12.08 28.18 0.34 -20.60 16 15 C 0.05 1.38 4.33 71.24 0.31 1.69 16 16 O -0.35 -13.99 9.67 -45.00 -0.43 -14.43 16 17 C 0.48 22.25 7.25 71.24 0.52 22.76 16 18 O -0.53 -26.23 15.21 21.96 0.33 -25.90 16 19 C 0.02 0.95 2.33 -12.29 -0.03 0.92 16 20 H 0.07 3.44 7.20 -2.39 -0.02 3.42 16 21 C -0.14 -5.95 8.61 71.98 0.62 -5.33 16 22 C -0.53 -31.36 8.95 25.60 0.23 -31.13 16 23 H 0.05 3.12 7.00 -2.91 -0.02 3.10 16 24 C 0.02 1.32 5.45 84.65 0.46 1.78 16 25 N -0.94 -58.90 13.96 21.45 0.30 -58.60 16 26 Si 0.95 43.83 24.37 68.60 1.67 45.51 16 27 H -0.26 -11.04 6.87 99.48 0.68 -10.36 16 28 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 29 H -0.24 -10.43 6.53 99.48 0.65 -9.78 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 1.33 8.13 -2.39 -0.02 1.31 16 34 H 0.07 1.54 8.13 -2.39 -0.02 1.52 16 35 H 0.05 1.05 7.86 -2.39 -0.02 1.03 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 39 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 41 H 0.09 1.04 5.96 -2.39 -0.01 1.03 16 42 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.11 2.99 7.51 -2.39 -0.02 2.97 16 44 H 0.12 3.05 8.08 -2.39 -0.02 3.03 16 45 H 0.05 2.24 3.27 -2.39 -0.01 2.23 16 46 H 0.07 2.72 8.12 -2.39 -0.02 2.70 16 47 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 48 H 0.27 15.75 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -86.46 384.93 6.16 -80.30 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.88 Total: 14.69 kcal Atomic # 6 Polarization: 16.65 SS G_CDS: 5.51 Total: 22.16 kcal Atomic # 7 Polarization: -70.75 SS G_CDS: -2.07 Total: -72.82 kcal Atomic # 8 Polarization: -90.00 SS G_CDS: 0.17 Total: -89.83 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.67 Total: 45.51 kcal Total: -86.46 6.16 -80.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647271018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.412 kcal (2) G-P(sol) polarization free energy of solvation -86.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds