Wall clock time and date at job start Sat Apr 11 2020 06:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45202 * 109.47237 * 2 1 4 4 C 1.34230 * 116.99926 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99709 * 180.02562 * 4 3 2 7 7 H 1.08995 * 109.70074 * 1.47393 * 6 4 3 8 8 C 1.53188 * 109.58758 * 121.83476 * 6 4 3 9 9 C 1.53044 * 109.33848 * 174.39986 * 8 6 4 10 10 C 1.53037 * 109.54286 * 298.68548 * 9 8 6 11 11 C 1.53190 * 109.33867 * 61.31207 * 10 9 8 12 12 N 1.46928 * 109.58020 * 241.12218 * 6 4 3 13 13 C 1.34775 * 120.63809 * 6.58333 * 12 6 4 14 14 O 1.21291 * 119.99491 * 6.03377 * 13 12 6 15 15 C 1.50692 * 120.00619 * 186.04028 * 13 12 6 16 16 O 1.45195 * 109.47333 * 179.97438 * 15 13 12 17 17 C 1.34233 * 117.00326 * 179.97438 * 16 15 13 18 18 O 1.20828 * 119.99662 * 359.97438 * 17 16 15 19 19 C 1.50701 * 120.00522 * 180.02562 * 17 16 15 20 20 H 1.09003 * 109.47077 * 59.99217 * 19 17 16 21 21 C 1.53003 * 109.46720 * 299.99899 * 19 17 16 22 22 C 1.50692 * 109.47287 * 180.02562 * 19 17 16 23 23 H 1.07999 * 120.00037 * 359.97438 * 22 19 17 24 24 C 1.37873 * 119.99850 * 179.97438 * 22 19 17 25 25 N 1.31514 * 120.00381 * 359.97438 * 24 22 19 26 26 Si 1.86802 * 119.99959 * 179.97438 * 24 22 19 27 27 H 1.48502 * 109.47265 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47084 * 120.00055 * 26 24 22 29 29 H 1.48497 * 109.47283 * 239.99827 * 26 24 22 30 30 H 1.08997 * 109.46916 * 299.99754 * 1 2 3 31 31 H 1.09004 * 109.47054 * 59.99934 * 1 2 3 32 32 H 1.08999 * 109.46810 * 179.97438 * 1 2 3 33 33 H 1.09010 * 109.47116 * 240.00045 * 2 1 3 34 34 H 1.08992 * 109.47125 * 120.00520 * 2 1 3 35 35 H 1.09001 * 109.49942 * 294.37021 * 8 6 4 36 36 H 1.09000 * 109.49810 * 54.43470 * 8 6 4 37 37 H 1.09002 * 109.45184 * 58.67471 * 9 8 6 38 38 H 1.09001 * 109.46072 * 178.62558 * 9 8 6 39 39 H 1.09007 * 109.46859 * 301.36589 * 10 9 8 40 40 H 1.08998 * 109.52378 * 181.29902 * 10 9 8 41 41 H 1.09004 * 109.58869 * 185.59476 * 11 10 9 42 42 H 1.09000 * 109.58719 * 65.16797 * 11 10 9 43 43 H 1.09003 * 109.46990 * 299.99704 * 15 13 12 44 44 H 1.08996 * 109.47543 * 59.99687 * 15 13 12 45 45 H 1.08997 * 109.47273 * 300.00013 * 21 19 17 46 46 H 1.09000 * 109.47085 * 59.99650 * 21 19 17 47 47 H 1.08997 * 109.47100 * 179.97438 * 21 19 17 48 48 H 0.97001 * 120.00439 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.1133 3.6690 0.0272 8 6 4.8211 3.1203 1.2258 9 6 5.5120 4.4837 1.1483 10 6 6.3856 4.5442 -0.1068 11 6 5.5030 4.3774 -1.3477 12 7 4.7262 3.1376 -1.2124 13 6 4.7523 2.2017 -2.1819 14 8 4.0245 1.2341 -2.1104 15 6 5.6859 2.3573 -3.3545 16 8 5.5272 1.2277 -4.2528 17 6 6.2923 1.2137 -5.3556 18 8 7.0686 2.1159 -5.5637 19 6 6.1822 0.0735 -6.3349 20 1 5.1639 0.0225 -6.7202 21 6 6.5269 -1.2396 -5.6293 22 6 7.1411 0.2969 -7.4758 23 1 7.7672 1.1767 -7.4906 24 6 7.2189 -0.6220 -8.5007 25 7 6.4568 -1.6937 -8.4825 26 14 8.4070 -0.3448 -9.9153 27 1 9.1441 0.9263 -9.7009 28 1 9.3714 -1.4722 -9.9798 29 1 7.6494 -0.2681 -11.1902 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 4.2171 3.0695 2.1317 36 1 5.5734 2.3318 1.2455 37 1 4.7588 5.2704 1.1043 38 1 6.1344 4.6262 2.0317 39 1 7.1236 3.7426 -0.0749 40 1 6.8954 5.5067 -0.1497 41 1 6.1302 4.3204 -2.2374 42 1 4.8244 5.2265 -1.4304 43 1 5.4516 3.2799 -3.8856 44 1 6.7150 2.3951 -2.9972 45 1 7.5452 -1.1886 -5.2439 46 1 5.8337 -1.4013 -4.8038 47 1 6.4469 -2.0644 -6.3374 48 1 6.5113 -2.3400 -9.2037 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647271020.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:06 Heat of formation + Delta-G solvation = -204.957570 kcal Electronic energy + Delta-G solvation = -31129.223764 eV Core-core repulsion = 26763.822122 eV Total energy + Delta-G solvation = -4365.401642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.35674 -39.82543 -39.20226 -37.66673 -36.40471 -35.63763 -33.88540 -33.38248 -32.38119 -31.45815 -30.66767 -28.64072 -26.14239 -25.18098 -24.60763 -23.30745 -22.87881 -21.43934 -21.24131 -19.84854 -19.28098 -18.04178 -17.20491 -16.92080 -16.56394 -16.40014 -16.09774 -15.99470 -15.72667 -15.29890 -15.08002 -14.69401 -14.34209 -14.27481 -13.99198 -13.83054 -13.37596 -13.31898 -13.17005 -12.81403 -12.73411 -12.54932 -12.11092 -12.00347 -11.82759 -11.61279 -11.59774 -11.51869 -11.30826 -11.15266 -11.04995 -10.77494 -10.67891 -10.48160 -10.34228 -10.22866 -10.20551 -10.05939 -9.70915 -9.19049 -9.04263 -9.01313 -8.44599 -6.09178 -4.15278 1.94033 2.39796 2.59101 2.69419 3.23374 3.29709 3.36658 3.42578 3.58297 4.18716 4.29917 4.40481 4.42128 4.50078 4.54745 4.68313 4.75057 4.87922 4.95313 4.96481 5.08336 5.16920 5.20533 5.24110 5.24540 5.28128 5.33998 5.44180 5.54811 5.60221 5.62808 5.72783 5.84198 5.87712 5.94841 6.08098 6.55550 6.71313 6.88649 6.91257 6.95735 7.14671 7.45972 7.76337 7.82076 7.95338 8.01450 8.14667 8.77716 8.93360 9.50137 10.98200 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.002838 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.810839 B = 9864.104628 C =11501.713223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.067 3.933 3 O -0.361 6.361 4 C 0.476 3.524 5 O -0.489 6.489 6 C 0.160 3.840 7 H 0.103 0.897 8 C -0.126 4.126 9 C -0.116 4.116 10 C -0.140 4.140 11 C 0.107 3.893 12 N -0.609 5.609 13 C 0.516 3.484 14 O -0.485 6.485 15 C 0.052 3.948 16 O -0.341 6.341 17 C 0.468 3.532 18 O -0.517 6.517 19 C 0.060 3.940 20 H 0.066 0.934 21 C -0.134 4.134 22 C -0.513 4.513 23 H 0.077 0.923 24 C 0.061 3.939 25 N -0.891 5.891 26 Si 0.905 3.095 27 H -0.271 1.271 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.031 0.969 46 H 0.026 0.974 47 H 0.096 0.904 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 12.657 22.064 26.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.006 4.006 3 O -0.278 6.278 4 C 0.318 3.682 5 O -0.374 6.374 6 C 0.056 3.944 7 H 0.121 0.879 8 C -0.164 4.164 9 C -0.153 4.153 10 C -0.179 4.179 11 C -0.015 4.015 12 N -0.349 5.349 13 C 0.304 3.696 14 O -0.358 6.358 15 C -0.026 4.026 16 O -0.258 6.258 17 C 0.313 3.687 18 O -0.404 6.404 19 C 0.041 3.959 20 H 0.084 0.916 21 C -0.192 4.192 22 C -0.551 4.551 23 H 0.095 0.905 24 C -0.140 4.140 25 N -0.529 5.529 26 Si 0.732 3.268 27 H -0.195 1.195 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.114 0.886 45 H 0.050 0.950 46 H 0.045 0.955 47 H 0.115 0.885 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.702 11.893 21.919 26.100 hybrid contribution 0.744 0.167 -0.731 1.056 sum -6.958 12.060 21.188 25.353 Atomic orbital electron populations 1.21797 0.92902 1.02873 1.03190 1.22961 0.94818 0.80018 1.02828 1.86374 1.24206 1.32709 1.84522 1.22597 0.81191 0.91505 0.72932 1.90685 1.60121 1.42438 1.44181 1.20657 0.94109 0.93015 0.86666 0.87924 1.21920 0.99417 0.99551 0.95505 1.21498 0.99222 0.96186 0.98421 1.21985 0.98357 1.03348 0.94173 1.21916 0.94442 0.85483 0.99687 1.47989 1.48911 1.20377 1.17654 1.20456 0.83813 0.82032 0.83315 1.90756 1.40274 1.29583 1.75202 1.22405 0.99171 0.91269 0.89757 1.86751 1.62124 1.43732 1.33227 1.25574 0.75652 0.88555 0.78962 1.90492 1.36888 1.38279 1.74788 1.18795 1.00749 0.86908 0.89450 0.91626 1.21741 0.98255 1.00162 0.99071 1.21162 1.21851 1.08278 1.03798 0.90536 1.24947 0.96014 0.94826 0.98234 1.69897 1.39111 1.10971 1.32922 0.86317 0.80624 0.78353 0.81479 1.19508 1.20879 1.20893 0.91850 0.91465 0.90295 0.90577 0.91710 0.89913 0.89899 0.91176 0.90690 0.90839 0.89869 0.88758 0.90270 0.88682 0.88631 0.94999 0.95499 0.88500 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 37.16 0.38 -0.94 16 2 C 0.07 0.83 6.19 37.16 0.23 1.06 16 3 O -0.36 -4.95 10.22 -41.14 -0.42 -5.38 16 4 C 0.48 6.96 4.52 36.01 0.16 7.13 16 5 O -0.49 -8.90 14.33 -26.92 -0.39 -9.29 16 6 C 0.16 1.69 3.34 -68.75 -0.23 1.46 16 7 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 8 C -0.13 -0.99 5.31 -26.61 -0.14 -1.13 16 9 C -0.12 -0.62 5.89 -26.69 -0.16 -0.77 16 10 C -0.14 -0.83 6.08 -26.61 -0.16 -0.99 16 11 C 0.11 0.79 6.35 -3.71 -0.02 0.77 16 12 N -0.61 -7.02 2.97 -166.53 -0.49 -7.51 16 13 C 0.52 8.30 7.47 -10.99 -0.08 8.22 16 14 O -0.49 -9.81 12.26 -26.63 -0.33 -10.13 16 15 C 0.05 0.85 4.30 36.00 0.15 1.00 16 16 O -0.34 -7.41 9.66 -45.91 -0.44 -7.85 16 17 C 0.47 11.28 7.25 36.01 0.26 11.54 16 18 O -0.52 -12.94 15.21 -18.75 -0.29 -13.22 16 19 C 0.06 1.58 2.74 -92.93 -0.25 1.32 16 20 H 0.07 1.79 8.14 -51.93 -0.42 1.37 16 21 C -0.13 -3.38 8.90 37.16 0.33 -3.05 16 22 C -0.51 -14.57 8.37 -34.45 -0.29 -14.86 16 23 H 0.08 2.24 6.76 -52.49 -0.35 1.89 16 24 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 25 N -0.89 -25.25 11.32 55.43 0.63 -24.63 16 26 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 27 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.11 8.13 -51.92 -0.42 0.69 16 34 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.83 7.93 -51.93 -0.41 0.41 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.09 0.69 5.93 -51.93 -0.31 0.39 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 1.34 7.69 -51.93 -0.40 0.94 16 44 H 0.10 1.43 7.93 -51.93 -0.41 1.02 16 45 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.62 8.11 -51.93 -0.42 0.20 16 47 H 0.10 2.58 6.07 -51.93 -0.32 2.27 16 48 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -36.02 391.82 -8.43 -44.45 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.67 Total: -1.30 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 0.09 Total: 12.37 kcal Atomic # 7 Polarization: -32.27 SS G_CDS: 0.13 Total: -32.14 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -1.86 Total: -45.87 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.02 -8.43 -44.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647271020.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.503 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds