Wall clock time and date at job start Sat Apr 11 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81396 * 103.00146 * 2 1 4 4 H 1.09000 * 109.47079 * 305.00317 * 3 2 1 5 5 C 1.53002 * 109.47214 * 65.00092 * 3 2 1 6 6 C 1.50702 * 109.47431 * 185.00014 * 3 2 1 7 7 O 1.21280 * 119.99626 * 340.00077 * 6 3 2 8 8 N 1.34773 * 120.00277 * 159.99961 * 6 3 2 9 9 C 1.46497 * 120.00137 * 180.02562 * 8 6 3 10 10 C 1.53003 * 109.47050 * 179.97438 * 9 8 6 11 11 H 1.08994 * 115.51703 * 29.58175 * 10 9 8 12 12 C 1.52995 * 117.40983 * 244.21316 * 10 9 8 13 13 H 1.09007 * 119.52612 * 4.07745 * 12 10 9 14 14 C 1.54381 * 118.13102 * 160.67314 * 12 10 9 15 15 N 1.48556 * 104.59562 * 87.22780 * 14 12 10 16 16 C 1.46902 * 111.00273 * 200.96156 * 15 14 12 17 17 C 1.50696 * 109.47408 * 170.00064 * 16 15 14 18 18 O 1.21297 * 119.99712 * 0.02562 * 17 16 15 19 19 N 1.34770 * 119.99972 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99930 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00126 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00075 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00032 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99926 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47138 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46707 * 120.00158 * 24 22 20 27 27 H 1.48499 * 109.46742 * 239.99889 * 24 22 20 28 28 C 1.48561 * 104.22529 * 320.52158 * 15 14 12 29 29 C 1.53006 * 117.44279 * 174.99683 * 10 9 8 30 30 H 1.09006 * 119.52429 * 355.86983 * 29 10 9 31 31 H 1.08998 * 109.47157 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46921 * 299.99557 * 1 2 3 33 33 H 1.08994 * 109.47105 * 60.00047 * 1 2 3 34 34 H 1.08996 * 109.47339 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.46973 * 300.00078 * 5 3 2 36 36 H 1.09000 * 109.46914 * 60.00124 * 5 3 2 37 37 H 0.96998 * 119.99875 * 0.02562 * 8 6 3 38 38 H 1.08996 * 109.47189 * 60.00114 * 9 8 6 39 39 H 1.09002 * 109.47111 * 299.99674 * 9 8 6 40 40 H 1.08997 * 110.41206 * 206.01193 * 14 12 10 41 41 H 1.08998 * 110.40698 * 328.44993 * 14 12 10 42 42 H 1.09003 * 109.46687 * 290.00634 * 16 15 14 43 43 H 1.08997 * 109.46559 * 49.99816 * 16 15 14 44 44 H 0.96994 * 120.00297 * 0.02562 * 19 17 16 45 45 H 0.97006 * 120.00533 * 179.97438 * 23 22 20 46 46 H 1.08997 * 110.41047 * 280.70328 * 28 15 14 47 47 H 1.08995 * 110.41330 * 158.26185 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 3.7142 1.9386 -0.1238 7 8 4.4551 1.0199 0.1555 8 7 4.2253 3.1124 -0.5450 9 6 5.6758 3.2785 -0.6659 10 6 5.9877 4.6924 -1.1604 11 1 5.2672 5.4590 -0.8757 12 6 6.6578 4.8280 -2.5291 13 1 6.8301 3.9373 -3.1335 14 6 6.5748 6.1915 -3.2483 15 7 7.7375 6.9586 -2.7318 16 6 7.5398 8.4024 -2.9167 17 6 8.6100 9.1558 -2.1696 18 8 9.4547 8.5494 -1.5450 19 7 8.6291 10.5030 -2.1963 20 6 9.6025 11.1884 -1.5162 21 1 10.3541 10.6486 -0.9594 22 6 9.6219 12.5775 -1.5434 23 7 8.7071 13.2343 -2.2204 24 14 10.9486 13.5113 -0.6172 25 1 11.8511 12.5466 0.0609 26 1 11.7319 14.3356 -1.5723 27 1 10.3168 14.3939 0.3962 28 6 7.7934 6.6093 -1.2889 29 6 7.4595 5.1028 -1.2402 30 1 8.2285 4.4168 -0.8850 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 1.9884 3.4635 1.3076 35 1 0.6636 2.2778 1.3969 36 1 2.2355 1.9149 2.1491 37 1 3.6327 3.8472 -0.7681 38 1 6.0668 2.5508 -1.3770 39 1 6.1417 3.1224 0.3071 40 1 6.6563 6.0580 -4.3270 41 1 5.6431 6.6980 -2.9964 42 1 7.5987 8.6442 -3.9779 43 1 6.5600 8.6870 -2.5331 44 1 7.9539 10.9879 -2.6961 45 1 8.7204 14.2041 -2.2391 46 1 7.0524 7.1811 -0.7304 47 1 8.7924 6.7903 -0.8924 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649473398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:08 Heat of formation + Delta-G solvation = -29.091526 kcal Electronic energy + Delta-G solvation = -26438.222967 eV Core-core repulsion = 22555.493071 eV Total energy + Delta-G solvation = -3882.729896 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42338 -39.77730 -38.06773 -35.55450 -34.26213 -33.86256 -33.23069 -31.29609 -29.35069 -28.70087 -28.21439 -26.62475 -24.95517 -24.21275 -21.83769 -21.23770 -20.41585 -20.17745 -19.18374 -17.89900 -17.82571 -17.17859 -16.16766 -15.91943 -15.81084 -15.44806 -15.09530 -14.71731 -14.63229 -14.50867 -14.17452 -14.09492 -13.90569 -13.63274 -13.52714 -13.31485 -13.01871 -12.86479 -12.67701 -12.45602 -12.24511 -12.14657 -11.88755 -11.58997 -11.44565 -11.25171 -11.08984 -10.98686 -10.39117 -10.37498 -10.30083 -10.26928 -10.07657 -9.94665 -9.54258 -9.38701 -8.44321 -8.10269 -8.06981 -7.96373 -6.46055 -3.86965 0.99480 2.03434 2.24580 2.71193 3.13436 3.24559 3.31601 3.43289 3.84360 3.99207 4.14851 4.18626 4.27759 4.36715 4.45114 4.56779 4.63529 4.67479 4.88987 4.91532 4.94129 5.00608 5.06026 5.15956 5.20666 5.24430 5.26165 5.39796 5.45952 5.50289 5.59436 5.69197 5.74044 5.84453 5.91390 6.06189 6.09514 6.21456 6.21681 6.61226 7.02895 7.10997 7.21788 7.51624 7.77450 8.01793 8.56698 9.13662 9.49019 10.00373 10.71595 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025247 B = 0.001597 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.763476 B =17531.063708 C =17806.430370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.187 6.187 3 C -0.095 4.095 4 H 0.108 0.892 5 C -0.143 4.143 6 C 0.533 3.467 7 O -0.518 6.518 8 N -0.721 5.721 9 C 0.155 3.845 10 C -0.146 4.146 11 H 0.105 0.895 12 C -0.157 4.157 13 H 0.118 0.882 14 C 0.058 3.942 15 N -0.487 5.487 16 C 0.034 3.966 17 C 0.441 3.559 18 O -0.580 6.580 19 N -0.561 5.561 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.064 3.936 29 C -0.143 4.143 30 H 0.119 0.881 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.402 0.598 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.042 0.958 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.037 0.963 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.098 -19.645 1.514 27.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.039 5.961 3 C -0.227 4.227 4 H 0.126 0.874 5 C -0.202 4.202 6 C 0.317 3.683 7 O -0.393 6.393 8 N -0.373 5.373 9 C 0.032 3.968 10 C -0.165 4.165 11 H 0.123 0.877 12 C -0.176 4.176 13 H 0.136 0.864 14 C -0.070 4.070 15 N -0.212 5.212 16 C -0.097 4.097 17 C 0.227 3.773 18 O -0.465 6.465 19 N -0.197 5.197 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.063 4.063 29 C -0.162 4.162 30 H 0.137 0.863 31 H 0.123 0.877 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.237 0.763 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.055 0.945 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.803 -21.492 1.810 27.341 hybrid contribution -1.843 2.681 0.217 3.261 sum -18.646 -18.811 2.027 26.564 Atomic orbital electron populations 1.23564 0.95591 1.06779 1.04969 1.87508 1.04936 1.05841 1.97855 1.23339 0.97166 0.98655 1.03524 0.87381 1.22008 1.02046 1.01212 0.94961 1.19622 0.88791 0.82706 0.77219 1.90767 1.60401 1.39913 1.48190 1.45883 1.08437 1.14680 1.68327 1.20862 0.79601 0.94552 1.01805 1.22644 0.96990 0.96889 0.99958 0.87668 1.23568 1.05338 0.99094 0.89565 0.86436 1.22697 0.92556 0.91734 0.99984 1.65405 1.36807 1.04973 1.13976 1.22092 0.97515 0.88469 1.01674 1.19686 0.88285 0.83021 0.86313 1.90453 1.41338 1.67453 1.47258 1.41852 1.28104 1.04275 1.45512 1.19762 1.07346 0.88868 1.26924 0.87784 1.25269 0.98239 0.96728 0.97658 1.69616 1.34386 1.08663 1.41547 0.85795 0.80277 0.79277 0.78977 1.19180 1.20704 1.20776 1.22873 1.04362 0.90129 0.88927 1.23642 0.92373 0.98558 1.01627 0.86259 0.87718 0.90311 0.90483 0.91000 0.91177 0.90483 0.76339 0.90808 0.90520 0.89706 0.93986 0.89034 0.93376 0.77459 0.91886 0.94463 0.86052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 10.45 101.05 1.06 0.41 16 2 S -0.19 -1.63 21.04 -107.50 -2.26 -3.89 16 3 C -0.09 -0.66 3.18 -27.88 -0.09 -0.75 16 4 H 0.11 0.51 8.14 -51.92 -0.42 0.09 16 5 C -0.14 -0.76 9.08 37.16 0.34 -0.42 16 6 C 0.53 5.25 7.00 -10.99 -0.08 5.17 16 7 O -0.52 -7.35 16.04 5.56 0.09 -7.26 16 8 N -0.72 -5.63 5.56 -60.30 -0.33 -5.96 16 9 C 0.16 1.42 5.95 -4.04 -0.02 1.39 16 10 C -0.15 -1.39 5.39 -90.62 -0.49 -1.88 16 11 H 0.11 0.95 8.04 -51.93 -0.42 0.54 16 12 C -0.16 -1.70 6.73 -89.24 -0.60 -2.30 16 13 H 0.12 1.16 8.12 -51.93 -0.42 0.74 16 14 C 0.06 0.71 6.30 -2.18 -0.01 0.70 16 15 N -0.49 -8.00 5.33 -231.42 -1.23 -9.24 16 16 C 0.03 0.60 5.55 -4.98 -0.03 0.57 16 17 C 0.44 10.18 7.50 -10.99 -0.08 10.10 16 18 O -0.58 -15.13 13.24 5.54 0.07 -15.06 16 19 N -0.56 -13.96 5.29 -10.97 -0.06 -14.01 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.36 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.15 13.05 55.50 0.72 -23.43 16 24 Si 0.93 20.77 29.55 -169.99 -5.02 15.75 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.06 1.04 5.11 -2.18 -0.01 1.03 16 29 C -0.14 -1.76 6.84 -89.23 -0.61 -2.37 16 30 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.10 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.08 0.28 7.14 -51.92 -0.37 -0.09 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.27 6.92 -51.93 -0.36 -0.09 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.40 2.09 8.40 -40.82 -0.34 1.75 16 38 H 0.07 0.73 7.93 -51.93 -0.41 0.32 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.04 0.48 7.82 -51.93 -0.41 0.07 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 43 H 0.05 0.76 7.88 -51.93 -0.41 0.35 16 44 H 0.39 9.33 7.90 -40.82 -0.32 9.01 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.04 0.61 8.00 -51.93 -0.42 0.20 16 47 H 0.12 2.40 6.05 -51.93 -0.31 2.08 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -33.23 397.63 -10.41 -43.64 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -7.51 Total: 9.67 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.87 Total: 3.80 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.90 Total: -52.64 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: 0.16 Total: -22.32 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.26 Total: -3.89 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.23 -10.41 -43.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649473398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.548 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds