Wall clock time and date at job start Sat Apr 11 2020 06:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81396 * 103.00146 * 2 1 4 4 H 1.09000 * 109.47079 * 305.00317 * 3 2 1 5 5 C 1.53002 * 109.47214 * 65.00092 * 3 2 1 6 6 C 1.50702 * 109.47431 * 185.00014 * 3 2 1 7 7 O 1.21280 * 119.99626 * 340.00077 * 6 3 2 8 8 N 1.34773 * 120.00277 * 159.99961 * 6 3 2 9 9 C 1.46497 * 120.00137 * 180.02562 * 8 6 3 10 10 C 1.53003 * 109.47050 * 179.97438 * 9 8 6 11 11 H 1.08994 * 115.51703 * 29.58175 * 10 9 8 12 12 C 1.52995 * 117.40983 * 244.21316 * 10 9 8 13 13 H 1.09007 * 119.52612 * 4.07745 * 12 10 9 14 14 C 1.54381 * 118.13102 * 160.67314 * 12 10 9 15 15 N 1.48556 * 104.59562 * 87.22780 * 14 12 10 16 16 C 1.46902 * 111.00273 * 200.96156 * 15 14 12 17 17 C 1.50696 * 109.47408 * 170.00064 * 16 15 14 18 18 O 1.21297 * 119.99712 * 0.02562 * 17 16 15 19 19 N 1.34770 * 119.99972 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99930 * 179.97438 * 19 17 16 21 21 H 1.07996 * 120.00126 * 0.02562 * 20 19 17 22 22 C 1.38950 * 120.00075 * 180.02562 * 20 19 17 23 23 N 1.31405 * 120.00032 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99926 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47138 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46707 * 120.00158 * 24 22 20 27 27 H 1.48499 * 109.46742 * 239.99889 * 24 22 20 28 28 C 1.48561 * 104.22529 * 320.52158 * 15 14 12 29 29 C 1.53006 * 117.44279 * 174.99683 * 10 9 8 30 30 H 1.09006 * 119.52429 * 355.86983 * 29 10 9 31 31 H 1.08998 * 109.47157 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46921 * 299.99557 * 1 2 3 33 33 H 1.08994 * 109.47105 * 60.00047 * 1 2 3 34 34 H 1.08996 * 109.47339 * 179.97438 * 5 3 2 35 35 H 1.08998 * 109.46973 * 300.00078 * 5 3 2 36 36 H 1.09000 * 109.46914 * 60.00124 * 5 3 2 37 37 H 0.96998 * 119.99875 * 0.02562 * 8 6 3 38 38 H 1.08996 * 109.47189 * 60.00114 * 9 8 6 39 39 H 1.09002 * 109.47111 * 299.99674 * 9 8 6 40 40 H 1.08997 * 110.41206 * 206.01193 * 14 12 10 41 41 H 1.08998 * 110.40698 * 328.44993 * 14 12 10 42 42 H 1.09003 * 109.46687 * 290.00634 * 16 15 14 43 43 H 1.08997 * 109.46559 * 49.99816 * 16 15 14 44 44 H 0.96994 * 120.00297 * 0.02562 * 19 17 16 45 45 H 0.97006 * 120.00533 * 179.97438 * 23 22 20 46 46 H 1.08997 * 110.41047 * 280.70328 * 28 15 14 47 47 H 1.08995 * 110.41330 * 158.26185 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4016 1.3074 6 6 3.7142 1.9386 -0.1238 7 8 4.4551 1.0199 0.1555 8 7 4.2253 3.1124 -0.5450 9 6 5.6758 3.2785 -0.6659 10 6 5.9877 4.6924 -1.1604 11 1 5.2672 5.4590 -0.8757 12 6 6.6578 4.8280 -2.5291 13 1 6.8301 3.9373 -3.1335 14 6 6.5748 6.1915 -3.2483 15 7 7.7375 6.9586 -2.7318 16 6 7.5398 8.4024 -2.9167 17 6 8.6100 9.1558 -2.1696 18 8 9.4547 8.5494 -1.5450 19 7 8.6291 10.5030 -2.1963 20 6 9.6025 11.1884 -1.5162 21 1 10.3541 10.6486 -0.9594 22 6 9.6219 12.5775 -1.5434 23 7 8.7071 13.2343 -2.2204 24 14 10.9486 13.5113 -0.6172 25 1 11.8511 12.5466 0.0609 26 1 11.7319 14.3356 -1.5723 27 1 10.3168 14.3939 0.3962 28 6 7.7934 6.6093 -1.2889 29 6 7.4595 5.1028 -1.2402 30 1 8.2285 4.4168 -0.8850 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3633 0.5138 -0.8899 34 1 1.9884 3.4635 1.3076 35 1 0.6636 2.2778 1.3969 36 1 2.2355 1.9149 2.1491 37 1 3.6327 3.8472 -0.7681 38 1 6.0668 2.5508 -1.3770 39 1 6.1417 3.1224 0.3071 40 1 6.6563 6.0580 -4.3270 41 1 5.6431 6.6980 -2.9964 42 1 7.5987 8.6442 -3.9779 43 1 6.5600 8.6870 -2.5331 44 1 7.9539 10.9879 -2.6961 45 1 8.7204 14.2041 -2.2391 46 1 7.0524 7.1811 -0.7304 47 1 8.7924 6.7903 -0.8924 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649473398.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:08 Heat of formation + Delta-G solvation = -53.940707 kcal Electronic energy + Delta-G solvation = -26439.300509 eV Core-core repulsion = 22555.493071 eV Total energy + Delta-G solvation = -3883.807438 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.41657 -40.73989 -39.75008 -36.62532 -35.90561 -34.91576 -34.03512 -33.28401 -30.00137 -29.57315 -29.31740 -27.83817 -26.31330 -25.19469 -23.02159 -22.04149 -21.37333 -21.12941 -20.91810 -19.84237 -18.55104 -17.87178 -17.67236 -16.97944 -16.69421 -16.55725 -16.41478 -16.17075 -15.82407 -15.42234 -15.14664 -15.08493 -14.91387 -14.76590 -14.37807 -14.30619 -13.94520 -13.80536 -13.55388 -13.45526 -13.22684 -13.07941 -13.00939 -12.94703 -12.71451 -12.56690 -12.41576 -12.26121 -12.17681 -12.10738 -11.49739 -11.22474 -11.02658 -10.83745 -10.80439 -10.21276 -10.14373 -10.01108 -9.34278 -8.72927 -8.47873 -5.96318 0.46818 1.35677 1.41550 1.47070 1.55378 1.64111 2.01206 2.02906 2.27505 2.52881 2.87028 3.19212 3.28186 3.42840 3.56411 3.69786 3.81427 3.97291 4.02869 4.09799 4.15093 4.23599 4.30140 4.36090 4.38304 4.43218 4.47448 4.58037 4.60387 4.62034 4.65850 4.68563 4.76296 4.93023 4.97298 5.10611 5.13125 5.21129 5.30749 5.35618 5.41061 5.84024 5.90406 6.09513 6.40201 6.59548 7.10360 7.12141 7.54456 8.10504 8.69668 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.025247 B = 0.001597 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.763476 B =17531.063708 C =17806.430370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 S -0.272 6.272 3 C -0.077 4.077 4 H 0.138 0.862 5 C -0.140 4.140 6 C 0.528 3.472 7 O -0.568 6.568 8 N -0.706 5.706 9 C 0.160 3.840 10 C -0.113 4.113 11 H 0.119 0.881 12 C -0.145 4.145 13 H 0.132 0.868 14 C 0.058 3.942 15 N -0.510 5.510 16 C 0.047 3.953 17 C 0.438 3.562 18 O -0.615 6.615 19 N -0.572 5.572 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.068 3.932 29 C -0.163 4.163 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.418 0.582 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.111 0.889 43 H 0.072 0.928 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.031 0.969 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.802 -19.283 0.765 29.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.047 6.047 3 C -0.209 4.209 4 H 0.155 0.845 5 C -0.199 4.199 6 C 0.314 3.686 7 O -0.447 6.447 8 N -0.359 5.359 9 C 0.036 3.964 10 C -0.131 4.131 11 H 0.137 0.863 12 C -0.163 4.163 13 H 0.150 0.850 14 C -0.069 4.069 15 N -0.235 5.235 16 C -0.085 4.085 17 C 0.225 3.775 18 O -0.502 6.502 19 N -0.209 5.209 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.060 4.060 29 C -0.183 4.183 30 H 0.136 0.864 31 H 0.128 0.872 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.256 0.744 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.129 0.871 43 H 0.090 0.910 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.049 0.951 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.554 -21.101 1.034 28.787 hybrid contribution -1.018 2.516 0.442 2.750 sum -20.572 -18.585 1.476 27.763 Atomic orbital electron populations 1.23575 0.91217 1.07647 1.06361 1.87810 1.09860 1.08918 1.98096 1.23298 0.95019 0.97014 1.05546 0.84456 1.22016 1.03061 1.01637 0.93172 1.20167 0.89957 0.82297 0.76219 1.90749 1.61838 1.41657 1.50422 1.45732 1.08057 1.14760 1.67374 1.20696 0.80462 0.94062 1.01139 1.22525 0.94982 0.97121 0.98517 0.86271 1.23651 1.04329 0.99009 0.89344 0.85038 1.22792 0.91598 0.91682 1.00780 1.65377 1.39619 1.04424 1.14041 1.21970 0.96011 0.88724 1.01761 1.20746 0.88761 0.82585 0.85383 1.90456 1.43103 1.68097 1.48530 1.41911 1.28013 1.05043 1.45916 1.19691 1.08306 0.89742 1.28491 0.90350 1.26010 1.00114 0.96896 0.98100 1.69670 1.35252 1.09205 1.41895 0.84884 0.77711 0.77804 0.78018 1.19906 1.19640 1.19572 1.22585 1.01636 0.92809 0.88936 1.23437 0.94494 0.96026 1.04305 0.86389 0.87161 0.88918 0.88959 0.89375 0.89154 0.92480 0.74397 0.91302 0.91524 0.88213 0.92186 0.87068 0.91047 0.76979 0.91289 0.95070 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.45 113.37 1.18 0.37 16 2 S -0.27 -4.56 21.04 -56.49 -1.19 -5.75 16 3 C -0.08 -0.92 3.18 29.85 0.09 -0.82 16 4 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 5 C -0.14 -1.14 9.08 71.98 0.65 -0.49 16 6 C 0.53 9.75 7.00 87.66 0.61 10.37 16 7 O -0.57 -16.31 16.04 -3.03 -0.05 -16.36 16 8 N -0.71 -9.38 5.56 -463.07 -2.57 -11.96 16 9 C 0.16 2.67 5.95 86.38 0.51 3.18 16 10 C -0.11 -1.87 5.39 -10.79 -0.06 -1.93 16 11 H 0.12 1.73 8.04 -2.39 -0.02 1.71 16 12 C -0.14 -2.75 6.73 -9.90 -0.07 -2.82 16 13 H 0.13 2.20 8.12 -2.38 -0.02 2.18 16 14 C 0.06 1.25 6.30 86.45 0.54 1.80 16 15 N -0.51 -16.21 5.33 -886.08 -4.73 -20.94 16 16 C 0.05 1.58 5.55 85.56 0.47 2.05 16 17 C 0.44 20.58 7.50 87.66 0.66 21.24 16 18 O -0.62 -33.50 13.24 -3.08 -0.04 -33.54 16 19 N -0.57 -29.00 5.29 -307.00 -1.62 -30.62 16 20 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 24 Si 0.99 42.66 29.55 68.60 2.03 44.68 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 27 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 28 C 0.07 2.23 5.11 86.45 0.44 2.67 16 29 C -0.16 -3.92 6.84 -9.90 -0.07 -3.99 16 30 H 0.12 2.84 8.14 -2.38 -0.02 2.82 16 31 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.38 7.14 -2.39 -0.02 0.37 16 33 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.09 0.39 6.92 -2.39 -0.02 0.37 16 36 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.42 2.82 8.40 -92.71 -0.78 2.04 16 38 H 0.07 1.27 7.93 -2.39 -0.02 1.25 16 39 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.11 7.82 -2.39 -0.02 1.09 16 42 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 43 H 0.07 2.10 7.88 -2.39 -0.02 2.08 16 44 H 0.40 19.02 7.90 -92.71 -0.73 18.28 16 45 H 0.28 13.81 8.31 -92.70 -0.77 13.04 16 46 H 0.03 1.03 8.00 -2.39 -0.02 1.01 16 47 H 0.08 3.19 6.05 -2.39 -0.01 3.18 16 Total: -1.00 -76.16 397.63 -2.14 -78.30 By element: Atomic # 1 Polarization: 31.85 SS G_CDS: -0.52 Total: 31.33 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 6.27 Total: 13.55 kcal Atomic # 7 Polarization: -103.58 SS G_CDS: -8.64 Total: -112.22 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.09 Total: -49.90 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: -4.56 SS G_CDS: -1.19 Total: -5.75 kcal Total: -76.16 -2.14 -78.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649473398.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.361 kcal (2) G-P(sol) polarization free energy of solvation -76.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds