Wall clock time and date at job start Sat Apr 11 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45203 * 109.47042 * 2 1 4 4 C 1.34223 * 117.00155 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00028 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00301 * 180.02562 * 4 3 2 7 7 C 1.53001 * 109.54273 * 305.09461 * 6 4 3 8 8 C 1.50700 * 109.46954 * 305.48078 * 7 6 4 9 9 O 1.21278 * 120.00180 * 355.19091 * 8 7 6 10 10 N 1.34781 * 119.99641 * 175.19720 * 8 7 6 11 11 C 1.47580 * 134.48700 * 179.97438 * 10 8 7 12 12 C 1.53952 * 86.11385 * 155.35672 * 11 10 8 13 13 O 1.42897 * 113.74021 * 269.15257 * 12 11 10 14 14 C 1.50695 * 113.74136 * 137.95244 * 12 11 10 15 15 H 1.08007 * 120.00342 * 1.92674 * 14 12 11 16 16 C 1.37881 * 119.99857 * 181.92242 * 14 12 11 17 17 N 1.31508 * 120.00115 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99859 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47313 * 180.02562 * 18 16 14 20 20 H 1.48498 * 109.47410 * 300.00112 * 18 16 14 21 21 H 1.48505 * 109.47164 * 60.00064 * 18 16 14 22 22 C 1.47806 * 134.46053 * 359.86266 * 10 8 7 23 23 C 1.53175 * 109.61882 * 65.31749 * 6 4 3 24 24 C 1.53093 * 109.16602 * 176.89395 * 23 6 4 25 25 O 1.42900 * 109.41198 * 302.38798 * 24 23 6 26 26 C 1.42903 * 114.09801 * 61.15968 * 25 24 23 27 27 C 1.53087 * 109.41533 * 298.84147 * 26 25 24 28 28 H 1.09000 * 109.47144 * 299.99920 * 1 2 3 29 29 H 1.09008 * 109.47259 * 59.99846 * 1 2 3 30 30 H 1.08998 * 109.47425 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47144 * 240.00080 * 2 1 3 32 32 H 1.08994 * 109.46859 * 119.99834 * 2 1 3 33 33 H 1.09000 * 109.46892 * 185.47890 * 7 6 4 34 34 H 1.08998 * 109.47036 * 65.48079 * 7 6 4 35 35 H 1.09000 * 113.77188 * 41.05814 * 11 10 8 36 36 H 1.09002 * 113.87373 * 269.66469 * 11 10 8 37 37 H 0.96701 * 114.00438 * 178.07531 * 13 12 11 38 38 H 0.96996 * 119.99907 * 179.97438 * 17 16 14 39 39 H 1.09000 * 113.77087 * 90.37777 * 22 10 8 40 40 H 1.09005 * 113.83379 * 318.92226 * 22 10 8 41 41 H 1.09001 * 109.52260 * 296.80265 * 23 6 4 42 42 H 1.09000 * 109.52148 * 56.98475 * 23 6 4 43 43 H 1.09001 * 109.48107 * 182.40640 * 24 23 6 44 44 H 1.08994 * 109.48946 * 62.37766 * 24 23 6 45 45 H 1.09000 * 109.48525 * 178.85254 * 26 25 24 46 46 H 1.09004 * 109.48966 * 58.82493 * 26 25 24 47 47 H 1.09003 * 109.51976 * 297.70093 * 27 26 25 48 48 H 1.09004 * 109.52568 * 177.51188 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9374 0.0000 7 6 3.3497 3.7279 -1.1790 8 6 3.5929 2.9686 -2.4578 9 8 4.2420 1.9443 -2.4407 10 7 3.0892 3.4280 -3.6205 11 6 3.1265 2.9610 -5.0199 12 6 1.8227 3.7572 -5.2103 13 8 0.6407 2.9923 -4.9658 14 6 1.7663 4.5286 -6.5036 15 1 2.5824 4.4626 -7.2079 16 6 0.6726 5.3187 -6.7879 17 7 -0.3215 5.3986 -5.9306 18 14 0.6029 6.2755 -8.3907 19 1 -0.6674 7.0419 -8.4549 20 1 1.7511 7.2150 -8.4567 21 1 0.6701 5.3307 -9.5345 22 6 2.2760 4.6008 -4.0049 23 6 3.5611 3.6422 1.3116 24 6 4.2157 5.0260 1.3345 25 8 5.6297 4.8850 1.1836 26 6 6.0273 4.2752 -0.0461 27 6 5.4455 2.8614 -0.1245 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 3.8387 4.7005 -1.2352 34 1 2.2780 3.8678 -1.0377 35 1 3.0028 1.8833 -5.1270 36 1 3.9674 3.3516 -5.5931 37 1 -0.1796 3.4964 -5.0557 38 1 -1.0907 5.9547 -6.1305 39 1 2.8672 5.4750 -4.2778 40 1 1.4744 4.8302 -3.3027 41 1 2.4787 3.7500 1.3824 42 1 3.9251 3.0531 2.1533 43 1 3.9984 5.5152 2.2840 44 1 3.8210 5.6285 0.5165 45 1 7.1151 4.2237 -0.0913 46 1 5.6564 4.8677 -0.8825 47 1 5.8476 2.2565 0.6882 48 1 5.7107 2.4108 -1.0809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649935693.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:05 Heat of formation + Delta-G solvation = -205.626835 kcal Electronic energy + Delta-G solvation = -32317.586592 eV Core-core repulsion = 27952.155928 eV Total energy + Delta-G solvation = -4365.430664 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.45684 -41.02265 -40.22391 -38.97312 -37.70324 -35.85693 -35.68249 -34.14216 -32.65508 -32.12227 -31.25289 -29.23414 -27.38109 -27.00510 -26.35985 -24.71407 -24.18111 -22.60752 -22.05681 -20.45778 -19.77851 -19.29463 -18.64831 -18.17818 -17.93051 -17.57868 -17.19189 -16.95927 -16.71487 -16.56767 -16.11646 -15.79498 -15.77273 -15.46528 -15.17545 -14.69953 -14.59559 -14.33483 -14.25455 -13.92982 -13.72079 -13.67797 -13.40686 -13.29182 -13.21160 -12.93686 -12.81968 -12.75913 -12.65196 -12.52079 -12.35026 -12.24704 -12.20443 -11.80151 -11.64643 -11.56796 -11.38144 -11.25812 -10.89570 -10.62461 -10.50109 -10.21513 -9.58436 -8.25578 -6.42264 1.17274 1.48682 1.51295 1.56184 1.58555 1.58793 1.90682 2.41697 2.92799 2.97123 3.25750 3.32232 3.38052 3.68718 3.78089 3.86782 3.90877 3.93754 4.01401 4.09941 4.18163 4.23228 4.25350 4.41195 4.43494 4.44378 4.55198 4.60177 4.66050 4.72657 4.78217 4.80861 4.82775 4.85660 4.89543 4.93315 5.01806 5.09286 5.11926 5.17339 5.24943 5.43913 5.73440 5.94146 6.20424 6.62574 6.71324 6.83147 7.09003 7.31247 7.45423 8.80213 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.012448 B = 0.003626 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.845467 B = 7719.156058 C = 8843.602238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.056 3.944 3 O -0.362 6.362 4 C 0.476 3.524 5 O -0.531 6.531 6 C -0.027 4.027 7 C -0.123 4.123 8 C 0.515 3.485 9 O -0.584 6.584 10 N -0.632 5.632 11 C 0.110 3.890 12 C 0.220 3.780 13 O -0.587 6.587 14 C -0.558 4.558 15 H 0.069 0.931 16 C 0.038 3.962 17 N -0.913 5.913 18 Si 0.964 3.036 19 H -0.282 1.282 20 H -0.267 1.267 21 H -0.278 1.278 22 C 0.094 3.906 23 C -0.139 4.139 24 C 0.057 3.943 25 O -0.391 6.391 26 C 0.067 3.933 27 C -0.139 4.139 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.050 0.950 36 H 0.102 0.898 37 H 0.388 0.612 38 H 0.276 0.724 39 H 0.097 0.903 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.127 0.873 44 H 0.070 0.930 45 H 0.112 0.888 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 2.055 14.392 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.017 4.017 3 O -0.279 6.279 4 C 0.320 3.680 5 O -0.419 6.419 6 C -0.029 4.029 7 C -0.162 4.162 8 C 0.306 3.694 9 O -0.467 6.467 10 N -0.365 5.365 11 C -0.012 4.012 12 C 0.179 3.821 13 O -0.399 6.399 14 C -0.596 4.596 15 H 0.087 0.913 16 C -0.163 4.163 17 N -0.553 5.553 18 Si 0.790 3.210 19 H -0.207 1.207 20 H -0.192 1.192 21 H -0.204 1.204 22 C -0.028 4.028 23 C -0.176 4.176 24 C -0.019 4.019 25 O -0.309 6.309 26 C -0.010 4.010 27 C -0.177 4.177 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.150 0.850 34 H 0.134 0.866 35 H 0.069 0.931 36 H 0.120 0.880 37 H 0.242 0.758 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.124 0.876 42 H 0.098 0.902 43 H 0.145 0.855 44 H 0.088 0.912 45 H 0.130 0.870 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.753 0.815 14.859 15.348 hybrid contribution -0.674 -0.019 -1.506 1.650 sum 3.079 0.795 13.354 13.727 Atomic orbital electron populations 1.21801 0.90086 1.04420 1.03651 1.23187 0.97298 0.79588 1.01635 1.86466 1.24209 1.33329 1.83918 1.23807 0.80526 0.92872 0.70839 1.90579 1.61142 1.44061 1.46157 1.20404 0.96524 0.88060 0.97902 1.21855 1.05133 1.00331 0.88882 1.20867 0.77936 0.85391 0.85185 1.90686 1.42487 1.26813 1.86683 1.50245 1.52078 1.27804 1.06339 1.23430 0.98526 0.99164 0.80127 1.20093 0.82532 0.87373 0.92073 1.86057 1.18138 1.42466 1.93211 1.21674 1.05705 1.27607 1.04660 0.91263 1.25665 0.94575 0.96305 0.99770 1.69439 1.08597 1.40487 1.36792 0.85510 0.77696 0.78439 0.79393 1.20720 1.19198 1.20376 1.24170 0.92329 0.89456 0.96840 1.22327 1.03851 0.98143 0.93308 1.22857 0.80153 0.94263 1.04614 1.87929 1.23460 1.80628 1.38933 1.22660 1.01099 0.90365 0.86837 1.22235 0.91786 0.99616 1.04077 0.89948 0.92631 0.88047 0.93838 0.90493 0.85031 0.86644 0.93111 0.88043 0.75808 0.91410 0.88533 0.90825 0.87550 0.90155 0.85499 0.91178 0.87039 0.92199 0.91159 0.90678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 10.29 71.98 0.74 -2.24 16 2 C 0.06 1.59 6.19 71.98 0.45 2.03 16 3 O -0.36 -11.59 10.05 -51.35 -0.52 -12.11 16 4 C 0.48 16.41 4.69 71.23 0.33 16.74 16 5 O -0.53 -21.77 15.30 26.44 0.40 -21.37 16 6 C -0.03 -0.75 0.47 -52.81 -0.02 -0.77 16 7 C -0.12 -3.42 3.82 29.85 0.11 -3.30 16 8 C 0.51 19.75 7.46 87.66 0.65 20.40 16 9 O -0.58 -26.39 13.05 8.27 0.11 -26.28 16 10 N -0.63 -25.32 3.61 -839.62 -3.03 -28.35 16 11 C 0.11 4.74 8.23 86.49 0.71 5.45 16 12 C 0.22 10.17 1.40 -10.88 -0.02 10.15 16 13 O -0.59 -29.65 13.49 -148.98 -2.01 -31.65 16 14 C -0.56 -26.88 8.61 25.60 0.22 -26.66 16 15 H 0.07 3.26 7.81 -2.91 -0.02 3.24 16 16 C 0.04 1.80 5.39 84.66 0.46 2.25 16 17 N -0.91 -43.89 11.20 21.45 0.24 -43.65 16 18 Si 0.96 37.97 29.54 68.60 2.03 40.00 16 19 H -0.28 -10.91 7.11 99.48 0.71 -10.20 16 20 H -0.27 -10.18 7.11 99.48 0.71 -9.48 16 21 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 22 C 0.09 3.71 8.02 86.45 0.69 4.40 16 23 C -0.14 -2.65 4.91 30.68 0.15 -2.50 16 24 C 0.06 0.90 6.57 72.01 0.47 1.38 16 25 O -0.39 -8.19 10.77 -148.98 -1.60 -9.79 16 26 C 0.07 1.46 6.57 72.01 0.47 1.93 16 27 C -0.14 -3.95 4.07 30.68 0.12 -3.82 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 32 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 33 H 0.13 2.92 5.03 -2.39 -0.01 2.91 16 34 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.10 3.98 8.09 -2.39 -0.02 3.96 16 37 H 0.39 19.66 6.60 -74.06 -0.49 19.17 16 38 H 0.28 12.63 8.31 -92.71 -0.77 11.86 16 39 H 0.10 3.53 8.09 -2.39 -0.02 3.51 16 40 H 0.07 2.83 8.14 -2.38 -0.02 2.81 16 41 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.07 0.96 6.73 -2.39 -0.02 0.95 16 45 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.06 1.23 6.48 -2.38 -0.02 1.21 16 47 H 0.07 2.07 7.96 -2.39 -0.02 2.05 16 48 H 0.07 2.64 5.81 -2.39 -0.01 2.63 16 Total: -1.00 -65.60 383.60 1.66 -63.94 By element: Atomic # 1 Polarization: 43.32 SS G_CDS: 0.49 Total: 43.81 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 5.55 Total: 25.45 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -2.79 Total: -72.00 kcal Atomic # 8 Polarization: -97.59 SS G_CDS: -3.62 Total: -101.21 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 2.03 Total: 40.00 kcal Total: -65.60 1.66 -63.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649935693.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.688 kcal (2) G-P(sol) polarization free energy of solvation -65.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds