Wall clock time and date at job start Sat Apr 11 2020 06:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35860 * 117.00271 * 2 1 4 4 C 1.38176 * 120.11409 * 359.97438 * 3 2 1 5 5 C 1.39749 * 119.80196 * 180.02562 * 4 3 2 6 6 C 1.43198 * 119.97781 * 180.02562 * 5 4 3 7 7 N 5.84002 * 81.33666 * 359.97438 * 2 1 3 8 8 C 1.39835 * 120.03758 * 359.97438 * 5 4 3 9 9 C 1.36560 * 120.23847 * 359.97438 * 8 5 4 10 10 C 1.39708 * 120.19564 * 0.02562 * 9 8 5 11 11 C 1.47600 * 120.02207 * 180.02562 * 10 9 8 12 12 N 1.31367 * 126.47944 * 132.96821 * 11 10 9 13 13 N 1.28513 * 109.91660 * 179.97438 * 12 11 10 14 14 C 1.31426 * 110.09612 * 359.97438 * 13 12 11 15 15 N 1.38353 * 126.36832 * 179.97438 * 14 13 12 16 16 C 1.46898 * 111.00147 * 236.07430 * 15 14 13 17 17 C 1.46900 * 110.99425 * 0.02781 * 15 14 13 18 18 H 1.08992 * 109.47498 * 299.99892 * 17 15 14 19 19 C 1.53001 * 109.47024 * 60.00002 * 17 15 14 20 20 C 1.50701 * 109.46631 * 179.97438 * 17 15 14 21 21 H 1.07995 * 120.00296 * 0.02562 * 20 17 15 22 22 C 1.37886 * 119.99699 * 179.97438 * 20 17 15 23 23 N 1.31513 * 119.99948 * 0.02562 * 22 20 17 24 24 Si 1.86803 * 119.99712 * 180.02562 * 22 20 17 25 25 H 1.48499 * 109.47356 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46609 * 120.00594 * 24 22 20 27 27 H 1.48498 * 109.46838 * 240.00106 * 24 22 20 28 28 N 1.36472 * 107.27491 * 359.76082 * 14 13 12 29 29 C 1.46499 * 127.16650 * 180.26571 * 28 14 13 30 30 H 1.09004 * 109.47353 * 300.00085 * 1 2 3 31 31 H 1.09004 * 109.47255 * 59.99930 * 1 2 3 32 32 H 1.09002 * 109.47394 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.09924 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.88239 * 180.27470 * 8 5 4 35 35 H 1.07996 * 119.89925 * 179.97438 * 9 8 5 36 36 H 1.09003 * 109.46933 * 59.99783 * 16 15 14 37 37 H 1.08999 * 109.46939 * 180.02562 * 16 15 14 38 38 H 1.09000 * 109.47226 * 300.00098 * 16 15 14 39 39 H 1.09005 * 109.46832 * 179.97438 * 19 17 15 40 40 H 1.08996 * 109.47330 * 299.99191 * 19 17 15 41 41 H 1.09001 * 109.47323 * 59.99665 * 19 17 15 42 42 H 0.97000 * 119.99682 * 179.97438 * 23 22 20 43 43 H 1.08997 * 109.46705 * 270.81871 * 29 28 14 44 44 H 1.08992 * 109.47440 * 30.82244 * 29 28 14 45 45 H 1.08998 * 109.46771 * 150.82312 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2956 2.3709 -0.0005 5 6 1.9369 3.6125 -0.0011 6 6 1.1631 4.8175 -0.0011 7 7 0.5493 5.7734 -0.0026 8 6 3.3336 3.6790 -0.0005 9 6 4.0766 2.5332 0.0011 10 6 3.4458 1.2866 0.0016 11 6 4.2526 0.0506 0.0039 12 7 4.0757 -0.9961 0.7777 13 7 4.9581 -1.8916 0.5113 14 6 5.7516 -1.4721 -0.4487 15 7 6.8157 -2.1668 -0.9958 16 6 8.0577 -1.3882 -0.9000 17 6 6.9685 -3.4820 -0.3597 18 1 7.1482 -3.3510 0.7073 19 6 5.6914 -4.2992 -0.5651 20 6 8.1341 -4.2079 -0.9806 21 1 8.7046 -3.7389 -1.7685 22 6 8.4728 -5.4704 -0.5418 23 7 7.7784 -6.0414 0.4180 24 14 9.9182 -6.3699 -1.3110 25 1 10.5298 -5.5169 -2.3615 26 1 10.9292 -6.6676 -0.2649 27 1 9.4447 -7.6400 -1.9175 28 7 5.3281 -0.2258 -0.8090 29 6 5.9010 0.6390 -1.8435 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.2169 2.3184 -0.0014 34 1 3.8266 4.6399 0.0035 35 1 5.1550 2.5909 0.0011 36 1 8.2770 -1.1813 0.1475 37 1 8.8779 -1.9573 -1.3378 38 1 7.9398 -0.4482 -1.4391 39 1 5.8049 -5.2754 -0.0934 40 1 4.8481 -3.7745 -0.1163 41 1 5.5116 -4.4304 -1.6321 42 1 8.0165 -6.9297 0.7264 43 1 6.6837 1.2588 -1.4063 44 1 6.3253 0.0241 -2.6371 45 1 5.1202 1.2774 -2.2566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650274931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:11 Heat of formation + Delta-G solvation = 132.101281 kcal Electronic energy + Delta-G solvation = -29340.112470 eV Core-core repulsion = 25361.221218 eV Total energy + Delta-G solvation = -3978.891252 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.43797 -40.52043 -38.16071 -37.21457 -36.62250 -34.73939 -33.04030 -32.26333 -30.84589 -29.25584 -28.93147 -27.65656 -27.56492 -25.62042 -24.52993 -24.17888 -22.70139 -21.74080 -20.83591 -19.81983 -19.53418 -17.28103 -16.99540 -16.57666 -16.48414 -16.02738 -15.83628 -15.65323 -15.21473 -14.65257 -14.56206 -14.31589 -14.24874 -13.99138 -13.85891 -13.41017 -13.25299 -13.04105 -12.94046 -12.75062 -12.59271 -12.35964 -12.00155 -11.89589 -11.58845 -11.38209 -11.22508 -11.04012 -10.88869 -10.55099 -10.54373 -10.21276 -10.06800 -9.92701 -9.72614 -9.47777 -9.31624 -8.80662 -8.52945 -8.39722 -7.31870 -6.05957 -4.14128 0.12281 0.95350 2.08228 2.24329 2.47867 2.70026 2.96376 3.26259 3.32013 3.34232 3.36625 3.40008 3.51206 4.17685 4.30602 4.31840 4.56942 4.58072 4.65956 4.75506 4.91858 4.93711 5.02622 5.07585 5.18804 5.25564 5.32792 5.36194 5.49701 5.58478 5.64437 5.78497 5.84275 5.95557 6.06016 6.17802 6.29037 6.43113 6.80573 7.00409 7.03013 7.06025 7.17831 7.37019 7.44292 7.67931 7.72317 7.96470 8.27892 8.41921 8.87310 9.31936 9.50530 11.00027 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024582 B = 0.002555 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.771760 B =10957.803507 C =11801.148808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.285 6.285 3 C 0.164 3.836 4 C -0.162 4.162 5 C 0.013 3.987 6 C 0.257 3.743 7 N -0.414 5.414 8 C -0.104 4.104 9 C -0.067 4.067 10 C 0.004 3.996 11 C 0.171 3.829 12 N -0.244 5.244 13 N -0.313 5.313 14 C 0.397 3.603 15 N -0.454 5.454 16 C 0.032 3.968 17 C 0.230 3.770 18 H 0.022 0.978 19 C -0.144 4.144 20 C -0.518 4.518 21 H 0.065 0.935 22 C 0.064 3.936 23 N -0.881 5.881 24 Si 0.900 3.100 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.283 1.283 28 N -0.488 5.488 29 C 0.078 3.922 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.105 0.895 33 H 0.143 0.857 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.030 0.970 37 H 0.099 0.901 38 H 0.051 0.949 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.023 0.977 42 H 0.262 0.738 43 H 0.075 0.925 44 H 0.095 0.905 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 18.405 -3.477 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.196 6.196 3 C 0.116 3.884 4 C -0.183 4.183 5 C 0.009 3.991 6 C -0.059 4.059 7 N -0.089 5.089 8 C -0.125 4.125 9 C -0.087 4.087 10 C 0.000 4.000 11 C -0.093 4.093 12 N -0.084 5.084 13 N -0.159 5.159 14 C 0.042 3.958 15 N -0.177 5.177 16 C -0.115 4.115 17 C 0.126 3.874 18 H 0.040 0.960 19 C -0.202 4.202 20 C -0.557 4.557 21 H 0.083 0.917 22 C -0.139 4.139 23 N -0.519 5.519 24 Si 0.727 3.273 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.209 1.209 28 N -0.186 5.186 29 C -0.066 4.066 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.161 0.839 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.049 0.951 37 H 0.118 0.882 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.556 18.456 -2.833 21.450 hybrid contribution 1.467 0.075 -0.821 1.683 sum -9.089 18.531 -3.654 20.961 Atomic orbital electron populations 1.23193 0.78145 1.04801 1.01176 1.86374 1.21259 1.24827 1.87111 1.18694 0.90729 0.84780 0.94239 1.21140 1.00599 0.90178 1.06381 1.15791 0.91723 0.86661 1.04880 1.25647 0.93422 0.92938 0.93860 1.81276 1.08551 1.10651 1.08456 1.20651 0.91224 0.99273 1.01332 1.20726 1.00561 0.89720 0.97712 1.16943 0.88563 0.89681 1.04830 1.21872 0.92683 0.97585 0.97157 1.74445 1.17492 0.96880 1.19622 1.74940 1.06339 1.21419 1.13207 1.23283 0.98269 0.82413 0.91819 1.58990 1.00693 1.05415 1.52611 1.22450 0.92099 0.96689 1.00256 1.19395 0.95823 0.79101 0.93033 0.95994 1.21983 0.96573 1.02663 0.99001 1.21092 1.12917 1.01130 1.20566 0.91681 1.24906 0.96856 0.97151 0.94980 1.69938 1.39110 1.15365 1.27485 0.86422 0.82069 0.79727 0.79041 1.19759 1.21028 1.20927 1.46104 1.25853 1.15518 1.31081 1.22076 0.99446 0.94600 0.90461 0.92298 0.92587 0.87631 0.83901 0.84305 0.84161 0.95092 0.88246 0.93068 0.89479 0.93499 0.95824 0.92757 0.90657 0.88650 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 101.05 0.99 1.16 16 2 O -0.28 -3.53 9.68 -19.30 -0.19 -3.71 16 3 C 0.16 1.79 6.69 -38.87 -0.26 1.53 16 4 C -0.16 -1.30 8.74 -39.04 -0.34 -1.64 16 5 C 0.01 0.10 5.74 -106.81 -0.61 -0.51 16 6 C 0.26 2.27 15.32 -22.47 -0.34 1.93 16 7 N -0.41 -4.59 18.54 41.84 0.78 -3.81 16 8 C -0.10 -0.69 9.68 -39.59 -0.38 -1.07 16 9 C -0.07 -0.55 8.79 -39.64 -0.35 -0.90 16 10 C 0.00 0.05 5.56 -104.79 -0.58 -0.53 16 11 C 0.17 2.75 7.07 -153.74 -1.09 1.66 16 12 N -0.24 -4.95 11.90 32.56 0.39 -4.56 16 13 N -0.31 -7.08 8.97 30.31 0.27 -6.81 16 14 C 0.40 8.02 6.74 -318.92 -2.15 5.87 16 15 N -0.45 -9.56 4.68 -176.10 -0.82 -10.38 16 16 C 0.03 0.56 9.09 60.06 0.55 1.11 16 17 C 0.23 5.82 1.73 -68.86 -0.12 5.70 16 18 H 0.02 0.63 8.11 -51.93 -0.42 0.21 16 19 C -0.14 -3.73 8.77 37.16 0.33 -3.40 16 20 C -0.52 -13.59 7.88 -34.44 -0.27 -13.86 16 21 H 0.07 1.64 6.41 -52.49 -0.34 1.31 16 22 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 23 N -0.88 -24.86 11.32 55.43 0.63 -24.23 16 24 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 N -0.49 -7.64 3.23 -122.12 -0.39 -8.03 16 29 C 0.08 0.78 8.50 59.85 0.51 1.29 16 30 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.06 0.31 7.66 -51.93 -0.40 -0.08 16 32 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.14 0.86 6.30 -52.49 -0.33 0.52 16 34 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.14 0.92 7.70 -52.49 -0.40 0.52 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.10 1.79 6.10 -51.93 -0.32 1.47 16 38 H 0.05 0.68 5.41 -51.93 -0.28 0.40 16 39 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 40 H 0.05 1.20 5.42 -51.93 -0.28 0.92 16 41 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.07 0.58 7.80 -51.93 -0.41 0.17 16 44 H 0.09 0.99 7.64 -51.93 -0.40 0.60 16 45 H 0.08 0.66 7.59 -51.93 -0.39 0.26 16 LS Contribution 375.25 15.07 5.65 5.65 Total: -1.00 -33.99 375.25 -8.44 -42.43 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -5.50 Total: -2.01 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -4.22 Total: -0.06 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.84 Total: -57.82 kcal Atomic # 8 Polarization: -3.53 SS G_CDS: -0.19 Total: -3.71 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.99 -8.44 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650274931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.530 kcal (2) G-P(sol) polarization free energy of solvation -33.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds