Wall clock time and date at job start Sat Apr 11 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35860 * 117.00271 * 2 1 4 4 C 1.38176 * 120.11409 * 359.97438 * 3 2 1 5 5 C 1.39749 * 119.80196 * 180.02562 * 4 3 2 6 6 C 1.43198 * 119.97781 * 180.02562 * 5 4 3 7 7 N 5.84002 * 81.33666 * 359.97438 * 2 1 3 8 8 C 1.39835 * 120.03758 * 359.97438 * 5 4 3 9 9 C 1.36560 * 120.23847 * 359.97438 * 8 5 4 10 10 C 1.39708 * 120.19564 * 0.02562 * 9 8 5 11 11 C 1.47600 * 120.02207 * 180.02562 * 10 9 8 12 12 N 1.31367 * 126.47944 * 132.96821 * 11 10 9 13 13 N 1.28513 * 109.91660 * 179.97438 * 12 11 10 14 14 C 1.31426 * 110.09612 * 359.97438 * 13 12 11 15 15 N 1.38353 * 126.36832 * 179.97438 * 14 13 12 16 16 C 1.46898 * 111.00147 * 236.07430 * 15 14 13 17 17 C 1.46900 * 110.99425 * 0.02781 * 15 14 13 18 18 H 1.08992 * 109.47498 * 299.99892 * 17 15 14 19 19 C 1.53001 * 109.47024 * 60.00002 * 17 15 14 20 20 C 1.50701 * 109.46631 * 179.97438 * 17 15 14 21 21 H 1.07995 * 120.00296 * 0.02562 * 20 17 15 22 22 C 1.37886 * 119.99699 * 179.97438 * 20 17 15 23 23 N 1.31513 * 119.99948 * 0.02562 * 22 20 17 24 24 Si 1.86803 * 119.99712 * 180.02562 * 22 20 17 25 25 H 1.48499 * 109.47356 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46609 * 120.00594 * 24 22 20 27 27 H 1.48498 * 109.46838 * 240.00106 * 24 22 20 28 28 N 1.36472 * 107.27491 * 359.76082 * 14 13 12 29 29 C 1.46499 * 127.16650 * 180.26571 * 28 14 13 30 30 H 1.09004 * 109.47353 * 300.00085 * 1 2 3 31 31 H 1.09004 * 109.47255 * 59.99930 * 1 2 3 32 32 H 1.09002 * 109.47394 * 180.02562 * 1 2 3 33 33 H 1.07997 * 120.09924 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.88239 * 180.27470 * 8 5 4 35 35 H 1.07996 * 119.89925 * 179.97438 * 9 8 5 36 36 H 1.09003 * 109.46933 * 59.99783 * 16 15 14 37 37 H 1.08999 * 109.46939 * 180.02562 * 16 15 14 38 38 H 1.09000 * 109.47226 * 300.00098 * 16 15 14 39 39 H 1.09005 * 109.46832 * 179.97438 * 19 17 15 40 40 H 1.08996 * 109.47330 * 299.99191 * 19 17 15 41 41 H 1.09001 * 109.47323 * 59.99665 * 19 17 15 42 42 H 0.97000 * 119.99682 * 179.97438 * 23 22 20 43 43 H 1.08997 * 109.46705 * 270.81871 * 29 28 14 44 44 H 1.08992 * 109.47440 * 30.82244 * 29 28 14 45 45 H 1.08998 * 109.46771 * 150.82312 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2105 0.0000 4 6 1.2956 2.3709 -0.0005 5 6 1.9369 3.6125 -0.0011 6 6 1.1631 4.8175 -0.0011 7 7 0.5493 5.7734 -0.0026 8 6 3.3336 3.6790 -0.0005 9 6 4.0766 2.5332 0.0011 10 6 3.4458 1.2866 0.0016 11 6 4.2526 0.0506 0.0039 12 7 4.0757 -0.9961 0.7777 13 7 4.9581 -1.8916 0.5113 14 6 5.7516 -1.4721 -0.4487 15 7 6.8157 -2.1668 -0.9958 16 6 8.0577 -1.3882 -0.9000 17 6 6.9685 -3.4820 -0.3597 18 1 7.1482 -3.3510 0.7073 19 6 5.6914 -4.2992 -0.5651 20 6 8.1341 -4.2079 -0.9806 21 1 8.7046 -3.7389 -1.7685 22 6 8.4728 -5.4704 -0.5418 23 7 7.7784 -6.0414 0.4180 24 14 9.9182 -6.3699 -1.3110 25 1 10.5298 -5.5169 -2.3615 26 1 10.9292 -6.6676 -0.2649 27 1 9.4447 -7.6400 -1.9175 28 7 5.3281 -0.2258 -0.8090 29 6 5.9010 0.6390 -1.8435 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 0.2169 2.3184 -0.0014 34 1 3.8266 4.6399 0.0035 35 1 5.1550 2.5909 0.0011 36 1 8.2770 -1.1813 0.1475 37 1 8.8779 -1.9573 -1.3378 38 1 7.9398 -0.4482 -1.4391 39 1 5.8049 -5.2754 -0.0934 40 1 4.8481 -3.7745 -0.1163 41 1 5.5116 -4.4304 -1.6321 42 1 8.0165 -6.9297 0.7264 43 1 6.6837 1.2588 -1.4063 44 1 6.3253 0.0241 -2.6371 45 1 5.1202 1.2774 -2.2566 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650274931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:10 Heat of formation + Delta-G solvation = 111.880883 kcal Electronic energy + Delta-G solvation = -29340.989292 eV Core-core repulsion = 25361.221218 eV Total energy + Delta-G solvation = -3979.768074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.78507 -41.27108 -38.92157 -38.82863 -37.41889 -35.99009 -34.82583 -33.29584 -31.52972 -31.15443 -30.22849 -28.60958 -28.27141 -27.35095 -26.03173 -25.35151 -23.69654 -23.10249 -22.00208 -21.13825 -20.50801 -18.52571 -18.23225 -17.80489 -17.48280 -17.11631 -16.87912 -16.80658 -16.62783 -16.20922 -15.56976 -15.25306 -15.11994 -15.02811 -14.88987 -14.56530 -14.45248 -14.16316 -13.91265 -13.74762 -13.63712 -13.44161 -13.24442 -12.95852 -12.80881 -12.68844 -12.62023 -12.30320 -12.21704 -12.11687 -12.05691 -11.99117 -11.98868 -11.52602 -11.02610 -10.93940 -10.64294 -10.50909 -10.07637 -9.43713 -8.81933 -8.10325 -6.25945 -0.62275 0.31885 0.89240 1.33405 1.46557 1.47974 1.54187 1.59759 1.74396 2.06557 2.30714 2.43523 2.67923 2.76064 3.00505 3.20644 3.31597 3.66948 3.83354 3.99745 4.03180 4.14286 4.27178 4.33061 4.38244 4.42203 4.44401 4.53017 4.59181 4.60861 4.76752 4.78938 4.86734 4.89797 4.93126 5.02707 5.15980 5.19577 5.21870 5.35900 5.44837 5.51555 5.59210 5.68692 5.97404 6.03886 6.19578 6.34899 6.37832 6.61662 6.84370 7.42821 7.91616 8.96470 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024582 B = 0.002555 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.771760 B =10957.803507 C =11801.148808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.324 6.324 3 C 0.153 3.847 4 C -0.151 4.151 5 C 0.024 3.976 6 C 0.281 3.719 7 N -0.450 5.450 8 C -0.086 4.086 9 C -0.051 4.051 10 C -0.032 4.032 11 C 0.206 3.794 12 N -0.298 5.298 13 N -0.365 5.365 14 C 0.374 3.626 15 N -0.456 5.456 16 C 0.033 3.967 17 C 0.243 3.757 18 H -0.024 1.024 19 C -0.128 4.128 20 C -0.526 4.526 21 H 0.076 0.924 22 C 0.010 3.990 23 N -0.919 5.919 24 Si 0.971 3.029 25 H -0.257 1.257 26 H -0.282 1.282 27 H -0.284 1.284 28 N -0.478 5.478 29 C 0.062 3.938 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.103 0.897 33 H 0.163 0.837 34 H 0.173 0.827 35 H 0.162 0.838 36 H 0.018 0.982 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.019 0.981 42 H 0.262 0.738 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.524 21.997 -5.313 24.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.237 6.237 3 C 0.105 3.895 4 C -0.172 4.172 5 C 0.020 3.980 6 C -0.034 4.034 7 N -0.126 5.126 8 C -0.107 4.107 9 C -0.071 4.071 10 C -0.036 4.036 11 C -0.060 4.060 12 N -0.137 5.137 13 N -0.211 5.211 14 C 0.017 3.983 15 N -0.179 5.179 16 C -0.114 4.114 17 C 0.138 3.862 18 H -0.006 1.006 19 C -0.187 4.187 20 C -0.564 4.564 21 H 0.094 0.906 22 C -0.190 4.190 23 N -0.558 5.558 24 Si 0.795 3.205 25 H -0.181 1.181 26 H -0.208 1.208 27 H -0.210 1.210 28 N -0.174 5.174 29 C -0.078 4.078 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.122 0.878 33 H 0.181 0.819 34 H 0.190 0.810 35 H 0.180 0.820 36 H 0.037 0.963 37 H 0.110 0.890 38 H 0.117 0.883 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.031 22.099 -4.689 24.718 hybrid contribution 1.133 -0.807 -0.227 1.409 sum -8.898 21.293 -4.917 23.595 Atomic orbital electron populations 1.23422 0.76213 1.05423 1.02942 1.86326 1.23572 1.26269 1.87496 1.18835 0.90645 0.85168 0.94844 1.21239 1.01485 0.89273 1.05207 1.15854 0.92210 0.85864 1.04120 1.25609 0.92559 0.92469 0.92725 1.81326 1.09650 1.11910 1.09683 1.20950 0.90544 1.00100 0.99057 1.20901 1.01667 0.88390 0.96107 1.17183 0.88750 0.89102 1.08542 1.22627 0.91440 0.97554 0.94421 1.74332 1.18557 0.98494 1.22340 1.74743 1.07601 1.23617 1.15095 1.23078 0.98184 0.84366 0.92679 1.58911 1.02330 1.04499 1.52172 1.22554 0.90443 0.98182 1.00171 1.18943 0.95034 0.81543 0.90713 1.00601 1.21777 0.97364 1.01454 0.98074 1.21410 1.13116 1.01354 1.20513 0.90574 1.25832 0.99613 0.98128 0.95383 1.70103 1.40927 1.15687 1.29038 0.85316 0.78526 0.78251 0.78361 1.18067 1.20817 1.21039 1.46309 1.25403 1.14291 1.31415 1.22584 1.01402 0.94455 0.89386 0.90736 0.90467 0.87812 0.81944 0.80952 0.82034 0.96307 0.88959 0.88348 0.92176 0.93743 0.96208 0.92848 0.87295 0.88734 0.86613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -8.01 9.68 -91.97 -0.89 -8.90 16 3 C 0.15 3.09 6.69 22.73 0.15 3.24 16 4 C -0.15 -1.97 8.74 22.62 0.20 -1.77 16 5 C 0.02 0.26 5.74 -21.28 -0.12 0.14 16 6 C 0.28 3.98 15.32 88.33 1.35 5.34 16 7 N -0.45 -8.76 18.54 19.00 0.35 -8.41 16 8 C -0.09 -0.71 9.68 22.26 0.22 -0.50 16 9 C -0.05 -0.62 8.79 22.23 0.20 -0.42 16 10 C -0.03 -0.68 5.56 -19.97 -0.11 -0.79 16 11 C 0.21 6.53 7.07 136.09 0.96 7.50 16 12 N -0.30 -12.63 11.90 -50.90 -0.61 -13.23 16 13 N -0.37 -17.49 8.97 -58.03 -0.52 -18.01 16 14 C 0.37 15.47 6.74 260.13 1.75 17.22 16 15 N -0.46 -19.58 4.68 -711.04 -3.33 -22.91 16 16 C 0.03 1.12 9.09 127.69 1.16 2.28 16 17 C 0.24 12.91 1.73 44.17 0.08 12.99 16 18 H -0.02 -1.45 8.11 -2.39 -0.02 -1.47 16 19 C -0.13 -7.07 8.77 71.98 0.63 -6.44 16 20 C -0.53 -28.16 7.88 25.60 0.20 -27.96 16 21 H 0.08 3.83 6.41 -2.91 -0.02 3.81 16 22 C 0.01 0.54 5.30 84.66 0.45 0.99 16 23 N -0.92 -54.06 11.32 21.45 0.24 -53.82 16 24 Si 0.97 42.56 29.54 68.60 2.03 44.59 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 28 N -0.48 -14.42 3.23 -540.27 -1.75 -16.17 16 29 C 0.06 1.04 8.50 127.77 1.09 2.12 16 30 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 31 H 0.08 0.73 7.66 -2.38 -0.02 0.71 16 32 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.16 1.42 6.30 -2.91 -0.02 1.40 16 34 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 35 H 0.16 1.28 7.70 -2.91 -0.02 1.26 16 36 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 3.25 6.10 -2.39 -0.01 3.24 16 38 H 0.10 2.35 5.41 -2.39 -0.01 2.33 16 39 H 0.06 3.59 6.07 -2.38 -0.01 3.58 16 40 H 0.04 2.44 5.42 -2.39 -0.01 2.43 16 41 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 43 H 0.11 1.12 7.80 -2.39 -0.02 1.10 16 44 H 0.09 1.66 7.64 -2.39 -0.02 1.64 16 45 H 0.12 1.26 7.59 -2.39 -0.02 1.24 16 Total: -1.00 -81.18 375.25 5.89 -75.29 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.04 Total: 6.31 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 9.31 Total: 15.25 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -5.60 Total: -132.55 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.89 Total: -8.90 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -81.18 5.89 -75.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650274931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.174 kcal (2) G-P(sol) polarization free energy of solvation -81.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds