Wall clock time and date at job start Sat Apr 11 2020 06:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47094 * 2 1 4 4 C 1.34639 * 116.99844 * 180.02562 * 3 2 1 5 5 O 1.21514 * 120.00160 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99760 * 180.02562 * 4 3 2 7 7 C 1.46935 * 120.62860 * 180.02562 * 6 4 3 8 8 C 1.53192 * 108.88894 * 233.51422 * 7 6 4 9 9 C 1.53077 * 109.29915 * 305.57615 * 8 7 6 10 10 C 1.50698 * 109.45260 * 181.24709 * 9 8 7 11 11 O 1.20829 * 119.99756 * 273.10743 * 10 9 8 12 12 O 1.34220 * 120.00011 * 93.10800 * 10 9 8 13 13 C 1.45201 * 117.00011 * 175.19307 * 12 10 9 14 14 C 1.52997 * 109.47319 * 182.73633 * 13 12 10 15 15 C 1.50692 * 113.00409 * 53.87240 * 14 13 12 16 16 H 1.07999 * 120.00154 * 268.55716 * 15 14 13 17 17 C 1.37879 * 120.00212 * 88.55150 * 15 14 13 18 18 N 1.31515 * 120.00327 * 170.62690 * 17 15 14 19 19 Si 1.86807 * 119.99850 * 350.62008 * 17 15 14 20 20 H 1.48502 * 109.46897 * 94.16717 * 19 17 15 21 21 H 1.48496 * 109.47216 * 214.16679 * 19 17 15 22 22 H 1.48498 * 109.47097 * 334.16972 * 19 17 15 23 23 C 1.54039 * 113.81495 * 281.88212 * 14 13 12 24 24 O 1.44172 * 85.52047 * 223.19555 * 23 14 13 25 25 C 1.44178 * 93.33961 * 24.19672 * 24 23 14 26 26 C 1.53035 * 109.65500 * 61.15265 * 9 8 7 27 27 C 1.46924 * 120.63427 * 359.97438 * 6 4 3 28 28 H 1.08995 * 109.47590 * 59.99361 * 1 2 3 29 29 H 1.09004 * 109.47128 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46517 * 299.99205 * 1 2 3 31 31 H 1.09005 * 109.46496 * 240.00306 * 2 1 3 32 32 H 1.08995 * 109.47590 * 120.00639 * 2 1 3 33 33 H 1.08997 * 109.58529 * 353.37407 * 7 6 4 34 34 H 1.09000 * 109.58764 * 113.65659 * 7 6 4 35 35 H 1.09000 * 109.49797 * 65.39104 * 8 7 6 36 36 H 1.09002 * 109.49462 * 185.48272 * 8 7 6 37 37 H 1.09004 * 109.33137 * 301.14133 * 9 8 7 38 38 H 1.09006 * 109.46969 * 302.73538 * 13 12 10 39 39 H 1.09005 * 109.46977 * 62.73231 * 13 12 10 40 40 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 41 41 H 1.09003 * 113.86664 * 337.34874 * 23 14 13 42 42 H 1.09002 * 113.85933 * 109.04831 * 23 14 13 43 43 H 1.08998 * 113.86474 * 221.66123 * 25 24 23 44 44 H 1.08998 * 113.87075 * 89.95094 * 25 24 23 45 45 H 1.09005 * 109.49810 * 178.74779 * 26 9 8 46 46 H 1.09000 * 109.50137 * 58.65390 * 26 9 8 47 47 H 1.09004 * 109.58756 * 246.19967 * 27 6 4 48 48 H 1.09000 * 109.58418 * 6.48759 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0015 6 7 3.8639 2.7907 0.0000 7 6 5.3184 2.9993 -0.0012 8 6 5.6880 3.9219 1.1645 9 6 4.8654 5.2095 1.0712 10 6 5.2484 6.1326 2.1990 11 8 4.7004 6.0358 3.2715 12 8 6.1983 7.0623 2.0122 13 6 6.4409 7.9860 3.1059 14 6 7.5007 9.0065 2.6862 15 6 7.1596 9.7149 1.4006 16 1 7.5043 9.3177 0.4573 17 6 6.4072 10.8700 1.4286 18 7 6.2638 11.5880 0.3361 19 14 5.5914 11.4150 3.0183 20 1 6.4768 12.3751 3.7251 21 1 4.2956 12.0714 2.7099 22 1 5.3535 10.2318 3.8835 23 6 8.9414 8.4637 2.7372 24 8 9.2771 9.7309 3.3373 25 6 7.9371 9.9525 3.8208 26 6 3.3750 4.8763 1.1686 27 6 2.9818 3.9657 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8902 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.8249 2.0413 0.1161 34 1 5.6208 3.4597 -0.9417 35 1 5.4706 3.4211 2.1079 36 1 6.7502 4.1618 1.1159 37 1 5.0667 5.6979 0.1177 38 1 5.5153 8.5050 3.3552 39 1 6.7934 7.4333 3.9769 40 1 5.7349 12.4008 0.3560 41 1 9.0684 7.6119 3.4053 42 1 9.3890 8.3083 1.7555 43 1 7.5881 10.9779 3.6987 44 1 7.7573 9.5553 4.8198 45 1 2.7927 5.7967 1.1242 46 1 3.1772 4.3653 2.1109 47 1 3.0938 4.5072 -0.9389 48 1 1.9465 3.6453 0.1165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650490071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:17 Heat of formation + Delta-G solvation = -169.431460 kcal Electronic energy + Delta-G solvation = -30657.305689 eV Core-core repulsion = 26293.444574 eV Total energy + Delta-G solvation = -4363.861115 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.98000 -40.26217 -39.55451 -38.23262 -36.58619 -35.88036 -33.46521 -32.86499 -31.91050 -31.33410 -30.68696 -26.99319 -26.00253 -25.28350 -24.36328 -23.95504 -23.30617 -22.19352 -20.74213 -19.82068 -19.15961 -18.31108 -17.45839 -17.17627 -16.91134 -16.62384 -16.22991 -15.94616 -15.61390 -15.19404 -14.98522 -14.74630 -14.62418 -14.32863 -14.03708 -13.83764 -13.67188 -13.42349 -13.14131 -12.95132 -12.86864 -12.71113 -12.43989 -12.23053 -12.12075 -11.93340 -11.86524 -11.54459 -11.11873 -11.03736 -10.90953 -10.81116 -10.64925 -10.54871 -10.43331 -10.39296 -10.20598 -9.85521 -9.54090 -9.27121 -9.05477 -8.72450 -8.63795 -6.26414 -4.24775 1.85060 2.52057 2.57447 3.08447 3.09253 3.17118 3.23776 3.54768 4.19757 4.40454 4.52027 4.54842 4.60020 4.64122 4.73491 4.76002 4.94051 4.99587 5.03414 5.08153 5.16189 5.20861 5.33304 5.42000 5.46962 5.49424 5.50825 5.57130 5.60212 5.68649 5.71658 5.82102 5.85577 5.95234 5.95565 6.07195 6.09576 6.13799 6.18417 6.28217 6.58386 6.89209 6.95014 7.04147 7.05063 7.50010 8.02629 8.18765 8.33298 8.79069 9.33510 10.85974 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.002437 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.216100 B =11487.912115 C =12002.271313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.082 3.918 3 O -0.370 6.370 4 C 0.652 3.348 5 O -0.576 6.576 6 N -0.594 5.594 7 C 0.130 3.870 8 C -0.125 4.125 9 C -0.082 4.082 10 C 0.459 3.541 11 O -0.523 6.523 12 O -0.323 6.323 13 C 0.069 3.931 14 C -0.004 4.004 15 C -0.486 4.486 16 H 0.087 0.913 17 C 0.077 3.923 18 N -0.884 5.884 19 Si 0.867 3.133 20 H -0.274 1.274 21 H -0.289 1.289 22 H -0.258 1.258 23 C 0.040 3.960 24 O -0.369 6.369 25 C 0.021 3.979 26 C -0.122 4.122 27 C 0.114 3.886 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.068 0.932 39 H 0.048 0.952 40 H 0.267 0.733 41 H 0.058 0.942 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.086 0.914 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.148 -19.131 -0.859 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.407 3.593 5 O -0.465 6.465 6 N -0.335 5.335 7 C 0.009 3.991 8 C -0.163 4.163 9 C -0.102 4.102 10 C 0.302 3.698 11 O -0.412 6.412 12 O -0.238 6.238 13 C -0.005 4.005 14 C -0.005 4.005 15 C -0.523 4.523 16 H 0.105 0.895 17 C -0.127 4.127 18 N -0.521 5.521 19 Si 0.697 3.303 20 H -0.201 1.201 21 H -0.216 1.216 22 H -0.184 1.184 23 C -0.037 4.037 24 O -0.288 6.288 25 C -0.056 4.056 26 C -0.161 4.161 27 C -0.008 4.008 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.100 0.900 47 H 0.096 0.904 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.947 -19.159 -0.619 21.154 hybrid contribution -0.727 0.434 1.064 1.360 sum -9.675 -18.725 0.445 21.081 Atomic orbital electron populations 1.21833 0.92528 1.03063 1.03621 1.22950 0.94822 0.78760 1.02751 1.86232 1.22081 1.33103 1.86968 1.17959 0.81173 0.83970 0.76206 1.90983 1.59832 1.39384 1.56337 1.46977 1.07575 1.03123 1.75786 1.21675 0.77478 1.01275 0.98660 1.21927 1.00790 0.93826 0.99769 1.20985 0.96682 0.94470 0.98015 1.23530 0.77234 0.80183 0.88832 1.90608 1.52665 1.70356 1.27617 1.86579 1.51493 1.40262 1.45437 1.23859 1.01365 0.89356 0.85916 1.21642 0.90577 0.91784 0.96546 1.20301 1.33660 1.07702 0.90652 0.89514 1.24960 0.95802 0.95766 0.96125 1.69869 1.39362 1.14931 1.27902 0.87296 0.78937 0.79576 0.84532 1.20103 1.21633 1.18350 1.23992 0.95908 0.86226 0.97529 1.89574 1.28626 1.35979 1.74594 1.24280 0.83798 1.01204 0.96277 1.21877 0.93796 1.00702 0.99686 1.21796 0.94525 0.85609 0.98892 0.91421 0.90023 0.91405 0.91198 0.91204 0.88028 0.90087 0.90574 0.88838 0.87122 0.91360 0.93418 0.92272 0.92397 0.89369 0.89664 0.91999 0.89542 0.90018 0.90363 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.29 37.16 0.38 -0.43 16 2 C 0.08 0.66 6.19 37.16 0.23 0.89 16 3 O -0.37 -3.89 8.86 -40.32 -0.36 -4.25 16 4 C 0.65 8.00 8.43 54.05 0.46 8.46 16 5 O -0.58 -8.52 15.55 -19.28 -0.30 -8.82 16 6 N -0.59 -6.30 2.97 -178.53 -0.53 -6.83 16 7 C 0.13 1.25 6.43 -3.71 -0.02 1.23 16 8 C -0.12 -1.31 5.35 -26.59 -0.14 -1.46 16 9 C -0.08 -1.01 2.58 -91.71 -0.24 -1.24 16 10 C 0.46 7.80 6.97 36.00 0.25 8.05 16 11 O -0.52 -10.03 16.03 -18.75 -0.30 -10.33 16 12 O -0.32 -6.31 9.83 -39.23 -0.39 -6.70 16 13 C 0.07 1.42 4.61 37.16 0.17 1.59 16 14 C 0.00 -0.10 0.51 -154.58 -0.08 -0.17 16 15 C -0.49 -12.85 8.63 -34.44 -0.30 -13.14 16 16 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 17 C 0.08 2.10 5.41 -17.82 -0.10 2.00 16 18 N -0.88 -25.70 13.96 55.43 0.77 -24.93 16 19 Si 0.87 20.37 23.78 -169.99 -4.04 16.33 16 20 H -0.27 -6.29 6.65 56.52 0.38 -5.91 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.26 -5.66 5.00 56.52 0.28 -5.38 16 23 C 0.04 0.81 8.35 37.61 0.31 1.13 16 24 O -0.37 -8.33 12.40 -35.23 -0.44 -8.76 16 25 C 0.02 0.46 6.62 37.61 0.25 0.71 16 26 C -0.12 -1.33 4.98 -26.59 -0.13 -1.46 16 27 C 0.11 1.03 6.45 -3.69 -0.02 1.00 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 1.04 7.00 -51.93 -0.36 0.67 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.07 1.49 5.77 -51.93 -0.30 1.20 16 39 H 0.05 0.90 8.05 -51.93 -0.42 0.48 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 41 H 0.06 1.00 8.04 -51.93 -0.42 0.58 16 42 H 0.09 1.74 8.09 -51.93 -0.42 1.32 16 43 H 0.09 1.96 3.61 -51.93 -0.19 1.78 16 44 H 0.06 1.15 8.10 -51.93 -0.42 0.73 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.08 0.99 7.90 -51.93 -0.41 0.58 16 47 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.10 0.81 6.93 -51.93 -0.36 0.45 16 LS Contribution 383.33 15.07 5.78 5.78 Total: -1.00 -33.16 383.33 -6.43 -39.59 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -7.65 Total: 1.79 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 1.02 Total: 7.15 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.24 Total: -31.76 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -1.78 Total: -38.86 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.04 Total: 16.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.16 -6.43 -39.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650490071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.845 kcal (2) G-P(sol) polarization free energy of solvation -33.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds