Wall clock time and date at job start Sat Apr 11 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.47094 * 2 1 4 4 C 1.34639 * 116.99844 * 180.02562 * 3 2 1 5 5 O 1.21514 * 120.00160 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99760 * 180.02562 * 4 3 2 7 7 C 1.46935 * 120.62860 * 180.02562 * 6 4 3 8 8 C 1.53192 * 108.88894 * 233.51422 * 7 6 4 9 9 C 1.53077 * 109.29915 * 305.57615 * 8 7 6 10 10 C 1.50698 * 109.45260 * 181.24709 * 9 8 7 11 11 O 1.20829 * 119.99756 * 273.10743 * 10 9 8 12 12 O 1.34220 * 120.00011 * 93.10800 * 10 9 8 13 13 C 1.45201 * 117.00011 * 175.19307 * 12 10 9 14 14 C 1.52997 * 109.47319 * 182.73633 * 13 12 10 15 15 C 1.50692 * 113.00409 * 53.87240 * 14 13 12 16 16 H 1.07999 * 120.00154 * 268.55716 * 15 14 13 17 17 C 1.37879 * 120.00212 * 88.55150 * 15 14 13 18 18 N 1.31515 * 120.00327 * 170.62690 * 17 15 14 19 19 Si 1.86807 * 119.99850 * 350.62008 * 17 15 14 20 20 H 1.48502 * 109.46897 * 94.16717 * 19 17 15 21 21 H 1.48496 * 109.47216 * 214.16679 * 19 17 15 22 22 H 1.48498 * 109.47097 * 334.16972 * 19 17 15 23 23 C 1.54039 * 113.81495 * 281.88212 * 14 13 12 24 24 O 1.44172 * 85.52047 * 223.19555 * 23 14 13 25 25 C 1.44178 * 93.33961 * 24.19672 * 24 23 14 26 26 C 1.53035 * 109.65500 * 61.15265 * 9 8 7 27 27 C 1.46924 * 120.63427 * 359.97438 * 6 4 3 28 28 H 1.08995 * 109.47590 * 59.99361 * 1 2 3 29 29 H 1.09004 * 109.47128 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46517 * 299.99205 * 1 2 3 31 31 H 1.09005 * 109.46496 * 240.00306 * 2 1 3 32 32 H 1.08995 * 109.47590 * 120.00639 * 2 1 3 33 33 H 1.08997 * 109.58529 * 353.37407 * 7 6 4 34 34 H 1.09000 * 109.58764 * 113.65659 * 7 6 4 35 35 H 1.09000 * 109.49797 * 65.39104 * 8 7 6 36 36 H 1.09002 * 109.49462 * 185.48272 * 8 7 6 37 37 H 1.09004 * 109.33137 * 301.14133 * 9 8 7 38 38 H 1.09006 * 109.46969 * 302.73538 * 13 12 10 39 39 H 1.09005 * 109.46977 * 62.73231 * 13 12 10 40 40 H 0.96992 * 120.00032 * 180.02562 * 18 17 15 41 41 H 1.09003 * 113.86664 * 337.34874 * 23 14 13 42 42 H 1.09002 * 113.85933 * 109.04831 * 23 14 13 43 43 H 1.08998 * 113.86474 * 221.66123 * 25 24 23 44 44 H 1.08998 * 113.87075 * 89.95094 * 25 24 23 45 45 H 1.09005 * 109.49810 * 178.74779 * 26 9 8 46 46 H 1.09000 * 109.50137 * 58.65390 * 26 9 8 47 47 H 1.09004 * 109.58756 * 246.19967 * 27 6 4 48 48 H 1.09000 * 109.58418 * 6.48759 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0015 6 7 3.8639 2.7907 0.0000 7 6 5.3184 2.9993 -0.0012 8 6 5.6880 3.9219 1.1645 9 6 4.8654 5.2095 1.0712 10 6 5.2484 6.1326 2.1990 11 8 4.7004 6.0358 3.2715 12 8 6.1983 7.0623 2.0122 13 6 6.4409 7.9860 3.1059 14 6 7.5007 9.0065 2.6862 15 6 7.1596 9.7149 1.4006 16 1 7.5043 9.3177 0.4573 17 6 6.4072 10.8700 1.4286 18 7 6.2638 11.5880 0.3361 19 14 5.5914 11.4150 3.0183 20 1 6.4768 12.3751 3.7251 21 1 4.2956 12.0714 2.7099 22 1 5.3535 10.2318 3.8835 23 6 8.9414 8.4637 2.7372 24 8 9.2771 9.7309 3.3373 25 6 7.9371 9.9525 3.8208 26 6 3.3750 4.8763 1.1686 27 6 2.9818 3.9657 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8902 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 5.8249 2.0413 0.1161 34 1 5.6208 3.4597 -0.9417 35 1 5.4706 3.4211 2.1079 36 1 6.7502 4.1618 1.1159 37 1 5.0667 5.6979 0.1177 38 1 5.5153 8.5050 3.3552 39 1 6.7934 7.4333 3.9769 40 1 5.7349 12.4008 0.3560 41 1 9.0684 7.6119 3.4053 42 1 9.3890 8.3083 1.7555 43 1 7.5881 10.9779 3.6987 44 1 7.7573 9.5553 4.8198 45 1 2.7927 5.7967 1.1242 46 1 3.1772 4.3653 2.1109 47 1 3.0938 4.5072 -0.9389 48 1 1.9465 3.6453 0.1165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650490071.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:16 Heat of formation + Delta-G solvation = -191.644494 kcal Electronic energy + Delta-G solvation = -30658.268918 eV Core-core repulsion = 26293.444574 eV Total energy + Delta-G solvation = -4364.824344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.99943 -41.61104 -41.07040 -39.18435 -37.60570 -37.23755 -34.88124 -34.39620 -32.59928 -32.45552 -32.07273 -28.19474 -27.60133 -26.98582 -25.98117 -24.74533 -24.08525 -23.13833 -21.80869 -21.03955 -20.72446 -19.19401 -18.81153 -18.39375 -18.10587 -17.92705 -17.73370 -17.48920 -17.10379 -16.38964 -16.16164 -15.95817 -15.71426 -15.62978 -15.24530 -14.91592 -14.89739 -14.62366 -14.37054 -14.15672 -13.96354 -13.78081 -13.62600 -13.34489 -13.11276 -12.89836 -12.81374 -12.51262 -12.36591 -12.32290 -12.25195 -12.13045 -11.97371 -11.86207 -11.81827 -11.56781 -11.51967 -11.39874 -11.21849 -11.03807 -10.63838 -10.41570 -9.90510 -8.34832 -6.36763 1.06791 1.17439 1.23017 1.29394 1.36813 1.63366 1.80100 2.24002 2.77353 2.79950 3.13337 3.41040 3.55731 3.65025 3.81864 3.92680 4.04024 4.08478 4.09392 4.13836 4.24605 4.25573 4.27337 4.30108 4.37104 4.40449 4.48158 4.56108 4.59088 4.64874 4.66010 4.74012 4.76953 4.89835 4.94524 4.94630 4.99930 5.14578 5.18383 5.23523 5.32482 5.36612 5.40149 5.56914 5.61844 6.19046 6.23174 6.65348 6.81736 7.13925 7.24826 8.81185 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.020179 B = 0.002437 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.216100 B =11487.912115 C =12002.271313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.074 3.926 3 O -0.371 6.371 4 C 0.648 3.352 5 O -0.607 6.607 6 N -0.593 5.593 7 C 0.132 3.868 8 C -0.116 4.116 9 C -0.078 4.078 10 C 0.458 3.542 11 O -0.545 6.545 12 O -0.338 6.338 13 C 0.074 3.926 14 C -0.018 4.018 15 C -0.484 4.484 16 H 0.047 0.953 17 C 0.021 3.979 18 N -0.935 5.935 19 Si 0.919 3.081 20 H -0.265 1.265 21 H -0.295 1.295 22 H -0.231 1.231 23 C 0.049 3.951 24 O -0.391 6.391 25 C 0.022 3.978 26 C -0.117 4.117 27 C 0.120 3.880 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.267 0.733 41 H 0.098 0.902 42 H 0.083 0.917 43 H 0.069 0.931 44 H 0.103 0.897 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.098 0.902 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.868 -20.470 0.317 22.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.000 4.000 3 O -0.285 6.285 4 C 0.403 3.597 5 O -0.499 6.499 6 N -0.334 5.334 7 C 0.012 3.988 8 C -0.154 4.154 9 C -0.097 4.097 10 C 0.302 3.698 11 O -0.436 6.436 12 O -0.253 6.253 13 C 0.000 4.000 14 C -0.019 4.019 15 C -0.521 4.521 16 H 0.065 0.935 17 C -0.177 4.177 18 N -0.574 5.574 19 Si 0.746 3.254 20 H -0.191 1.191 21 H -0.222 1.222 22 H -0.155 1.155 23 C -0.027 4.027 24 O -0.310 6.310 25 C -0.055 4.055 26 C -0.155 4.155 27 C -0.002 4.002 28 H 0.089 0.911 29 H 0.121 0.879 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.141 0.859 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.116 0.884 42 H 0.101 0.899 43 H 0.087 0.913 44 H 0.120 0.880 45 H 0.106 0.894 46 H 0.086 0.914 47 H 0.117 0.883 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.671 -20.514 0.570 22.686 hybrid contribution -0.473 0.770 0.634 1.104 sum -10.144 -19.744 1.203 22.230 Atomic orbital electron populations 1.21842 0.90245 1.04478 1.03703 1.23220 0.96545 0.77727 1.02554 1.86247 1.21049 1.34529 1.86638 1.18161 0.81537 0.84073 0.75942 1.90957 1.60620 1.40459 1.57873 1.47122 1.08134 1.03064 1.75035 1.21724 0.77093 1.00884 0.99138 1.21876 1.01080 0.92813 0.99667 1.21149 0.97797 0.94179 0.96572 1.24392 0.76039 0.79667 0.89672 1.90593 1.53234 1.70893 1.28897 1.86594 1.52650 1.40749 1.45328 1.23608 0.99949 0.89507 0.86978 1.21594 0.92560 0.92649 0.95083 1.20432 1.32719 1.07659 0.91311 0.93475 1.25736 0.96596 0.96052 0.99329 1.70012 1.41122 1.15864 1.30422 0.86417 0.77584 0.80218 0.81174 1.19115 1.22237 1.15460 1.24116 0.93695 0.86624 0.98303 1.89552 1.29176 1.37271 1.75034 1.24404 0.83033 1.00263 0.97788 1.21847 0.92777 1.01015 0.99906 1.21864 0.94708 0.84752 0.98876 0.91111 0.87937 0.91465 0.91233 0.91664 0.88541 0.87985 0.91731 0.87854 0.85921 0.92775 0.90889 0.92359 0.88429 0.89913 0.91293 0.87962 0.89385 0.91411 0.88350 0.87491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.29 71.98 0.74 -0.55 16 2 C 0.07 1.12 6.19 71.98 0.45 1.56 16 3 O -0.37 -7.39 8.86 -55.49 -0.49 -7.88 16 4 C 0.65 15.27 8.43 129.79 1.09 16.36 16 5 O -0.61 -17.72 15.55 19.80 0.31 -17.41 16 6 N -0.59 -11.61 2.97 -949.15 -2.82 -14.43 16 7 C 0.13 2.32 6.43 86.36 0.56 2.87 16 8 C -0.12 -2.25 5.35 30.68 0.16 -2.09 16 9 C -0.08 -1.78 2.58 -11.50 -0.03 -1.81 16 10 C 0.46 14.90 6.97 71.24 0.50 15.40 16 11 O -0.55 -20.18 16.03 21.96 0.35 -19.82 16 12 O -0.34 -12.75 9.83 -51.32 -0.50 -13.25 16 13 C 0.07 2.87 4.61 71.98 0.33 3.21 16 14 C -0.02 -0.77 0.51 -52.23 -0.03 -0.79 16 15 C -0.48 -25.91 8.63 25.60 0.22 -25.69 16 16 H 0.05 2.82 8.06 -2.91 -0.02 2.80 16 17 C 0.02 1.18 5.41 84.66 0.46 1.64 16 18 N -0.94 -56.07 13.96 21.45 0.30 -55.78 16 19 Si 0.92 41.62 23.78 68.60 1.63 43.25 16 20 H -0.26 -11.51 6.65 99.48 0.66 -10.85 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.23 -9.34 5.00 99.48 0.50 -8.84 16 23 C 0.05 1.86 8.35 72.28 0.60 2.46 16 24 O -0.39 -16.87 12.40 -148.98 -1.85 -18.71 16 25 C 0.02 0.87 6.62 72.28 0.48 1.35 16 26 C -0.12 -2.36 4.98 30.69 0.15 -2.21 16 27 C 0.12 1.90 6.45 86.38 0.56 2.46 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.10 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.85 7.00 -2.39 -0.02 1.84 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.12 2.55 8.14 -2.38 -0.02 2.53 16 38 H 0.05 2.25 5.77 -2.38 -0.01 2.23 16 39 H 0.07 2.48 8.05 -2.38 -0.02 2.46 16 40 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.10 2.96 8.04 -2.39 -0.02 2.94 16 42 H 0.08 3.19 8.09 -2.39 -0.02 3.17 16 43 H 0.07 3.03 3.61 -2.39 -0.01 3.02 16 44 H 0.10 3.34 8.10 -2.39 -0.02 3.32 16 45 H 0.09 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.07 1.57 7.90 -2.39 -0.02 1.55 16 47 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 48 H 0.11 1.54 6.93 -2.39 -0.02 1.53 16 Total: -1.00 -73.33 383.33 3.87 -69.46 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.71 Total: 20.42 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.24 Total: 14.17 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -2.52 Total: -70.21 kcal Atomic # 8 Polarization: -74.90 SS G_CDS: -2.18 Total: -77.09 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 1.63 Total: 43.25 kcal Total: -73.33 3.87 -69.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650490071.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.183 kcal (2) G-P(sol) polarization free energy of solvation -73.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds