Wall clock time and date at job start Sat Apr 11 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47413 * 2 1 4 4 C 1.46760 * 124.35234 * 89.99658 * 3 2 1 5 5 C 1.54482 * 105.47864 * 162.98413 * 4 3 2 6 6 C 1.54627 * 101.75944 * 25.41765 * 5 4 3 7 7 H 1.09000 * 110.48680 * 216.39203 * 6 5 4 8 8 N 1.46898 * 110.48873 * 93.88239 * 6 5 4 9 9 C 1.46898 * 111.00326 * 140.89911 * 8 6 5 10 10 C 1.53004 * 115.54802 * 294.47835 * 9 8 6 11 11 N 1.46503 * 109.47034 * 278.37764 * 10 9 8 12 12 C 1.34778 * 119.99819 * 184.07286 * 11 10 9 13 13 O 1.21275 * 120.00034 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.99865 * 179.97438 * 12 11 10 15 15 S 1.80997 * 109.47101 * 180.02562 * 14 12 11 16 16 C 1.76203 * 100.00020 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99761 * 0.02562 * 16 15 14 18 18 C 1.38797 * 119.99934 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00016 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99864 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47259 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47094 * 120.00170 * 20 18 16 23 23 H 1.48502 * 109.47053 * 239.99789 * 20 18 16 24 24 C 1.52999 * 117.52083 * 80.17664 * 9 8 6 25 25 C 1.52998 * 117.49961 * 148.81168 * 9 8 6 26 26 C 1.34422 * 124.34889 * 269.99945 * 3 2 1 27 27 O 1.21278 * 124.94543 * 0.44085 * 26 3 2 28 28 H 1.09002 * 109.47460 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47208 * 300.00130 * 1 2 3 30 30 H 1.09004 * 109.46812 * 59.99931 * 1 2 3 31 31 H 1.09002 * 109.47208 * 239.99870 * 2 1 3 32 32 H 1.09004 * 109.46812 * 120.00069 * 2 1 3 33 33 H 1.09000 * 110.24555 * 43.98591 * 4 3 2 34 34 H 1.08997 * 110.32254 * 282.02386 * 4 3 2 35 35 H 1.09000 * 110.97079 * 267.30151 * 5 4 3 36 36 H 1.08995 * 110.96858 * 143.53235 * 5 4 3 37 37 H 1.00904 * 110.99779 * 16.94025 * 8 6 5 38 38 H 1.08997 * 109.47391 * 38.37578 * 10 9 8 39 39 H 1.08995 * 109.47300 * 158.38316 * 10 9 8 40 40 H 0.97000 * 120.00248 * 4.07595 * 11 10 9 41 41 H 1.09001 * 109.47065 * 299.99957 * 14 12 11 42 42 H 1.08999 * 109.46874 * 59.99903 * 14 12 11 43 43 H 0.97001 * 119.99817 * 179.97438 * 19 18 16 44 44 H 1.09000 * 117.50105 * 214.96745 * 24 9 8 45 45 H 1.08996 * 117.49430 * 0.02562 * 24 9 8 46 46 H 1.08998 * 117.50162 * 359.97438 * 25 9 8 47 47 H 1.09000 * 117.49957 * 145.00058 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2944 2.1619 1.2116 5 6 3.1745 3.3441 0.7487 6 6 2.7695 3.4753 -0.7378 7 1 3.6323 3.7481 -1.3456 8 7 1.6982 4.4683 -0.8931 9 6 1.8984 5.2736 -2.1053 10 6 3.1377 6.1708 -2.1041 11 7 2.8473 7.4038 -1.3681 12 6 3.7697 8.3845 -1.3056 13 8 4.8400 8.2464 -1.8590 14 6 3.4707 9.6531 -0.5490 15 16 4.8948 10.7657 -0.6500 16 6 4.2880 12.1256 0.2919 17 1 3.2982 12.0857 0.7220 18 6 5.0825 13.2477 0.4818 19 7 6.2895 13.2957 -0.0411 20 14 4.4389 14.6897 1.4797 21 1 3.0647 14.3886 1.9552 22 1 5.3270 14.9192 2.6476 23 1 4.4136 15.9075 0.6303 24 6 1.4719 4.6598 -3.4403 25 6 0.6507 5.7933 -2.8222 26 6 2.2712 2.0962 -1.1098 27 8 2.1211 1.6945 -2.2442 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 2.8323 1.5531 1.9383 34 1 1.3644 2.5309 1.6442 35 1 4.2332 3.1032 0.8448 36 1 2.9307 4.2516 1.3010 37 1 1.6287 5.0560 -0.0759 38 1 3.9647 5.6476 -1.6243 39 1 3.4097 6.4161 -3.1307 40 1 1.9911 7.5144 -0.9258 41 1 2.5984 10.1395 -0.9856 42 1 3.2690 9.4143 0.4952 43 1 6.8446 14.0801 0.0913 44 1 2.0741 4.8952 -4.3177 45 1 1.0422 3.6583 -3.4192 46 1 -0.3187 5.5373 -2.3948 47 1 0.7128 6.7743 -3.2932 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670746006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:31 Heat of formation + Delta-G solvation = -39.553549 kcal Electronic energy + Delta-G solvation = -27253.401609 eV Core-core repulsion = 23370.218046 eV Total energy + Delta-G solvation = -3883.183564 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.95674 -39.49884 -38.14338 -36.72650 -34.87504 -33.84507 -32.45046 -31.94878 -29.75875 -29.18562 -26.97637 -26.28638 -25.42511 -23.93960 -22.85201 -21.83951 -20.35187 -20.25240 -19.44850 -17.93379 -17.11230 -16.98519 -16.46080 -16.17274 -16.12209 -15.49548 -15.20280 -14.83204 -14.82069 -14.51396 -14.33923 -13.92580 -13.85526 -13.84861 -13.28300 -13.17659 -13.10648 -13.02610 -12.61938 -12.52529 -12.27903 -11.94180 -11.80167 -11.70275 -11.58011 -11.42843 -11.09052 -11.04315 -10.81067 -10.75858 -10.41166 -10.13729 -9.82950 -9.41090 -9.10210 -9.09241 -8.95228 -8.87756 -8.25689 -6.52588 -6.24047 -3.94728 2.25345 2.64553 2.93600 3.05570 3.19761 3.24315 3.29228 3.46379 3.66452 3.81289 3.95556 4.05192 4.18065 4.38805 4.41055 4.56380 4.65583 4.78321 4.79338 4.86160 4.95658 4.99296 5.09966 5.11261 5.14445 5.27842 5.29663 5.35088 5.45981 5.47640 5.52156 5.56003 5.59382 5.75819 5.78280 5.82885 5.85679 6.06876 6.10483 6.20831 6.47496 6.56076 6.75708 6.90886 7.57627 7.65886 7.94693 8.33151 8.56843 9.21459 10.83397 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021006 B = 0.002029 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.607855 B =13799.816291 C =14295.976566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 N -0.619 5.619 4 C 0.108 3.892 5 C -0.145 4.145 6 C 0.053 3.947 7 H 0.095 0.905 8 N -0.630 5.630 9 C 0.010 3.990 10 C 0.134 3.866 11 N -0.736 5.736 12 C 0.531 3.469 13 O -0.517 6.517 14 C -0.153 4.153 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.141 4.141 25 C -0.151 4.151 26 C 0.537 3.463 27 O -0.524 6.524 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.353 0.647 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.398 0.602 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.097 0.903 45 H 0.109 0.891 46 H 0.101 0.899 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.060 -25.536 2.740 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.001 3.999 3 N -0.354 5.354 4 C -0.015 4.015 5 C -0.183 4.183 6 C -0.060 4.060 7 H 0.112 0.888 8 N -0.263 5.263 9 C -0.082 4.082 10 C 0.008 3.992 11 N -0.391 5.391 12 C 0.317 3.683 13 O -0.391 6.391 14 C -0.303 4.303 15 S 0.166 5.834 16 C -0.683 4.683 17 H 0.091 0.909 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.179 4.179 25 C -0.189 4.189 26 C 0.323 3.677 27 O -0.398 6.398 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.114 0.886 37 H 0.174 0.826 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.232 0.768 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.127 0.873 46 H 0.120 0.880 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.630 -26.417 0.893 28.877 hybrid contribution -1.322 1.680 1.979 2.913 sum -12.951 -24.737 2.871 28.069 Atomic orbital electron populations 1.22142 0.95700 1.02177 1.02631 1.21325 0.94493 0.81123 1.02957 1.48266 1.66085 1.13724 1.07305 1.22014 0.99503 0.92600 0.87396 1.23011 1.01089 0.99525 0.94665 1.22235 0.94671 0.91811 0.97285 0.88761 1.60037 1.44252 1.17042 1.04971 1.21694 0.96030 0.99456 0.91062 1.21237 0.95406 0.84500 0.98049 1.46001 1.19321 1.17278 1.56479 1.20338 0.83688 0.84063 0.80191 1.90709 1.23787 1.79873 1.44759 1.23523 1.07386 0.97286 1.02124 1.85419 1.15349 1.12375 1.70271 1.22903 1.04346 1.02935 1.38133 0.90870 1.25001 0.94632 0.98193 0.95819 1.70029 1.08268 1.29504 1.42452 0.86113 0.78854 0.81079 0.79422 1.19612 1.20571 1.20553 1.23117 1.02228 0.99054 0.93488 1.23077 0.94746 0.98981 1.02049 1.20669 0.76113 0.86721 0.84229 1.90685 1.52756 1.75177 1.21160 0.91574 0.92438 0.92105 0.90120 0.90518 0.90422 0.90872 0.89041 0.88606 0.82553 0.91609 0.90612 0.76836 0.89218 0.89289 0.92223 0.88462 0.87288 0.88029 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.24 37.16 0.38 -0.66 16 2 C 0.12 0.80 6.65 -4.05 -0.03 0.77 16 3 N -0.62 -4.84 2.93 -172.42 -0.51 -5.35 16 4 C 0.11 0.56 7.35 -3.12 -0.02 0.54 16 5 C -0.14 -0.82 6.80 -25.10 -0.17 -0.99 16 6 C 0.05 0.45 3.13 -67.72 -0.21 0.24 16 7 H 0.09 0.92 6.38 -51.93 -0.33 0.59 16 8 N -0.63 -5.18 6.54 -93.06 -0.61 -5.79 16 9 C 0.01 0.09 1.60 -131.60 -0.21 -0.12 16 10 C 0.13 1.55 5.59 -4.04 -0.02 1.53 16 11 N -0.74 -9.18 5.50 -60.29 -0.33 -9.51 16 12 C 0.53 9.54 7.85 -10.98 -0.09 9.46 16 13 O -0.52 -11.55 15.86 5.56 0.09 -11.46 16 14 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 15 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 16 C -0.53 -15.06 9.50 30.94 0.29 -14.76 16 17 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 19 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 20 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.14 -1.40 10.10 -26.73 -0.27 -1.67 16 25 C -0.15 -1.32 10.11 -26.73 -0.27 -1.59 16 26 C 0.54 5.70 7.66 -10.86 -0.08 5.61 16 27 O -0.52 -7.45 16.80 5.56 0.09 -7.35 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.61 7.93 -51.93 -0.41 0.20 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.44 7.46 -51.93 -0.39 0.06 16 37 H 0.35 2.43 7.93 -39.29 -0.31 2.12 16 38 H 0.07 0.80 6.68 -51.93 -0.35 0.46 16 39 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 40 H 0.40 3.89 8.47 -40.82 -0.35 3.54 16 41 H 0.09 1.63 8.14 -51.91 -0.42 1.20 16 42 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.10 16 44 H 0.10 0.94 8.07 -51.93 -0.42 0.52 16 45 H 0.11 1.26 7.33 -51.93 -0.38 0.88 16 46 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 404.38 15.07 6.09 6.09 Total: -1.00 -36.05 404.38 -9.79 -45.83 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.54 Total: 2.86 kcal Atomic # 6 Polarization: -1.85 SS G_CDS: -0.57 Total: -2.43 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: -0.71 Total: -45.88 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.81 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.05 -9.79 -45.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670746006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.279 kcal (2) G-P(sol) polarization free energy of solvation -36.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds