Wall clock time and date at job start Sat Apr 11 2020 06:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47413 * 2 1 4 4 C 1.46760 * 124.35234 * 89.99658 * 3 2 1 5 5 C 1.54482 * 105.47864 * 162.98413 * 4 3 2 6 6 C 1.54627 * 101.75944 * 25.41765 * 5 4 3 7 7 H 1.09000 * 110.48680 * 216.39203 * 6 5 4 8 8 N 1.46898 * 110.48873 * 93.88239 * 6 5 4 9 9 C 1.46898 * 111.00326 * 140.89911 * 8 6 5 10 10 C 1.53004 * 115.54802 * 294.47835 * 9 8 6 11 11 N 1.46503 * 109.47034 * 278.37764 * 10 9 8 12 12 C 1.34778 * 119.99819 * 184.07286 * 11 10 9 13 13 O 1.21275 * 120.00034 * 0.02562 * 12 11 10 14 14 C 1.50704 * 119.99865 * 179.97438 * 12 11 10 15 15 S 1.80997 * 109.47101 * 180.02562 * 14 12 11 16 16 C 1.76203 * 100.00020 * 180.02562 * 15 14 12 17 17 H 1.07995 * 119.99761 * 0.02562 * 16 15 14 18 18 C 1.38797 * 119.99934 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00016 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99864 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47259 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47094 * 120.00170 * 20 18 16 23 23 H 1.48502 * 109.47053 * 239.99789 * 20 18 16 24 24 C 1.52999 * 117.52083 * 80.17664 * 9 8 6 25 25 C 1.52998 * 117.49961 * 148.81168 * 9 8 6 26 26 C 1.34422 * 124.34889 * 269.99945 * 3 2 1 27 27 O 1.21278 * 124.94543 * 0.44085 * 26 3 2 28 28 H 1.09002 * 109.47460 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47208 * 300.00130 * 1 2 3 30 30 H 1.09004 * 109.46812 * 59.99931 * 1 2 3 31 31 H 1.09002 * 109.47208 * 239.99870 * 2 1 3 32 32 H 1.09004 * 109.46812 * 120.00069 * 2 1 3 33 33 H 1.09000 * 110.24555 * 43.98591 * 4 3 2 34 34 H 1.08997 * 110.32254 * 282.02386 * 4 3 2 35 35 H 1.09000 * 110.97079 * 267.30151 * 5 4 3 36 36 H 1.08995 * 110.96858 * 143.53235 * 5 4 3 37 37 H 1.00904 * 110.99779 * 16.94025 * 8 6 5 38 38 H 1.08997 * 109.47391 * 38.37578 * 10 9 8 39 39 H 1.08995 * 109.47300 * 158.38316 * 10 9 8 40 40 H 0.97000 * 120.00248 * 4.07595 * 11 10 9 41 41 H 1.09001 * 109.47065 * 299.99957 * 14 12 11 42 42 H 1.08999 * 109.46874 * 59.99903 * 14 12 11 43 43 H 0.97001 * 119.99817 * 179.97438 * 19 18 16 44 44 H 1.09000 * 117.50105 * 214.96745 * 24 9 8 45 45 H 1.08996 * 117.49430 * 0.02562 * 24 9 8 46 46 H 1.08998 * 117.50162 * 359.97438 * 25 9 8 47 47 H 1.09000 * 117.49957 * 145.00058 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2944 2.1619 1.2116 5 6 3.1745 3.3441 0.7487 6 6 2.7695 3.4753 -0.7378 7 1 3.6323 3.7481 -1.3456 8 7 1.6982 4.4683 -0.8931 9 6 1.8984 5.2736 -2.1053 10 6 3.1377 6.1708 -2.1041 11 7 2.8473 7.4038 -1.3681 12 6 3.7697 8.3845 -1.3056 13 8 4.8400 8.2464 -1.8590 14 6 3.4707 9.6531 -0.5490 15 16 4.8948 10.7657 -0.6500 16 6 4.2880 12.1256 0.2919 17 1 3.2982 12.0857 0.7220 18 6 5.0825 13.2477 0.4818 19 7 6.2895 13.2957 -0.0411 20 14 4.4389 14.6897 1.4797 21 1 3.0647 14.3886 1.9552 22 1 5.3270 14.9192 2.6476 23 1 4.4136 15.9075 0.6303 24 6 1.4719 4.6598 -3.4403 25 6 0.6507 5.7933 -2.8222 26 6 2.2712 2.0962 -1.1098 27 8 2.1211 1.6945 -2.2442 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 2.8323 1.5531 1.9383 34 1 1.3644 2.5309 1.6442 35 1 4.2332 3.1032 0.8448 36 1 2.9307 4.2516 1.3010 37 1 1.6287 5.0560 -0.0759 38 1 3.9647 5.6476 -1.6243 39 1 3.4097 6.4161 -3.1307 40 1 1.9911 7.5144 -0.9258 41 1 2.5984 10.1395 -0.9856 42 1 3.2690 9.4143 0.4952 43 1 6.8446 14.0801 0.0913 44 1 2.0741 4.8952 -4.3177 45 1 1.0422 3.6583 -3.4192 46 1 -0.3187 5.5373 -2.3948 47 1 0.7128 6.7743 -3.2932 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670746006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:31 Heat of formation + Delta-G solvation = -66.657218 kcal Electronic energy + Delta-G solvation = -27254.576913 eV Core-core repulsion = 23370.218046 eV Total energy + Delta-G solvation = -3884.358867 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66578 -40.72653 -39.16815 -37.50581 -35.55518 -35.05312 -34.57007 -32.55535 -31.23312 -29.75325 -27.88134 -27.58846 -27.14667 -24.45919 -23.61220 -22.44923 -21.70738 -21.09992 -20.18256 -19.78919 -18.05698 -17.75220 -17.63524 -17.16785 -16.99502 -16.86986 -16.49353 -16.31354 -15.76855 -15.61242 -15.27399 -15.07595 -14.62618 -14.51530 -14.45356 -14.39672 -14.26049 -13.87359 -13.72525 -13.33190 -13.20707 -13.14608 -12.90607 -12.77730 -12.59408 -12.42336 -12.37222 -12.26395 -11.94476 -11.71919 -11.55692 -11.34019 -11.14980 -10.96329 -10.77609 -10.25104 -10.17640 -9.74754 -9.58701 -8.65337 -8.33814 -6.11505 1.27565 1.42332 1.47492 1.49163 1.58707 1.60966 2.06170 2.16067 2.28497 2.78294 3.00588 3.00801 3.32825 3.35957 3.48051 3.52714 3.84630 3.92201 3.97277 4.02724 4.12209 4.20862 4.28273 4.32760 4.35761 4.49484 4.53281 4.60249 4.60915 4.68707 4.75328 4.79232 4.83458 4.91147 4.95505 5.03584 5.05623 5.27065 5.27741 5.35662 5.43664 5.65144 5.76213 6.10719 6.21290 6.30075 6.48754 7.07914 7.20463 7.23081 8.75511 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021006 B = 0.002029 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.607855 B =13799.816291 C =14295.976566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.117 3.883 3 N -0.615 5.615 4 C 0.106 3.894 5 C -0.137 4.137 6 C 0.052 3.948 7 H 0.077 0.923 8 N -0.624 5.624 9 C 0.018 3.982 10 C 0.139 3.861 11 N -0.705 5.705 12 C 0.535 3.465 13 O -0.567 6.567 14 C -0.128 4.128 15 S -0.154 6.154 16 C -0.543 4.543 17 H 0.084 0.916 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.999 3.001 21 H -0.255 1.255 22 H -0.274 1.274 23 H -0.276 1.276 24 C -0.150 4.150 25 C -0.133 4.133 26 C 0.524 3.476 27 O -0.572 6.572 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.113 0.887 37 H 0.364 0.636 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.416 0.584 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.270 0.730 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.112 0.888 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.422 -25.683 5.426 30.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.005 4.005 3 N -0.349 5.349 4 C -0.016 4.016 5 C -0.176 4.176 6 C -0.061 4.061 7 H 0.095 0.905 8 N -0.259 5.259 9 C -0.075 4.075 10 C 0.013 3.987 11 N -0.359 5.359 12 C 0.321 3.679 13 O -0.445 6.445 14 C -0.279 4.279 15 S 0.073 5.927 16 C -0.691 4.691 17 H 0.102 0.898 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.820 3.180 21 H -0.179 1.179 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.188 4.188 25 C -0.171 4.171 26 C 0.311 3.689 27 O -0.451 6.451 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.187 0.813 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.254 0.746 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.130 0.870 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -14.055 -26.600 3.639 30.304 hybrid contribution -0.645 1.551 1.120 2.018 sum -14.700 -25.049 4.759 29.431 Atomic orbital electron populations 1.22075 0.95333 1.02941 1.01562 1.21485 0.94773 0.80629 1.03575 1.48437 1.64728 1.14164 1.07528 1.22244 1.00332 0.92430 0.86558 1.23043 1.01554 1.00604 0.92356 1.22196 0.93936 0.90822 0.99161 0.90471 1.59998 1.44111 1.16818 1.04951 1.21482 0.95449 0.99086 0.91446 1.21234 0.96527 0.84000 0.96933 1.45657 1.18862 1.16149 1.55228 1.20092 0.83691 0.84443 0.79670 1.90705 1.26065 1.80768 1.46990 1.23357 1.04070 0.96303 1.04147 1.85625 1.21010 1.15118 1.70913 1.23236 1.04758 1.03171 1.37942 0.89769 1.26134 0.94741 1.01473 0.96946 1.70194 1.09906 1.30583 1.44164 0.84907 0.78835 0.76692 0.77523 1.17870 1.19984 1.20136 1.23018 1.03086 0.98773 0.93917 1.23110 0.94657 0.98484 1.00808 1.21083 0.75940 0.87719 0.84173 1.90650 1.55039 1.76259 1.23124 0.89992 0.91507 0.94962 0.91921 0.87457 0.88019 0.89568 0.88555 0.86914 0.81293 0.92049 0.92063 0.74635 0.87219 0.86852 0.92058 0.88620 0.88993 0.86981 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 10.24 71.98 0.74 -1.05 16 2 C 0.12 1.37 6.65 86.38 0.57 1.94 16 3 N -0.61 -8.81 2.93 -818.01 -2.40 -11.21 16 4 C 0.11 0.78 7.35 86.83 0.64 1.42 16 5 C -0.14 -1.22 6.80 31.65 0.22 -1.00 16 6 C 0.05 0.84 3.13 44.91 0.14 0.98 16 7 H 0.08 1.52 6.38 -2.39 -0.02 1.51 16 8 N -0.62 -9.24 6.54 -448.33 -2.93 -12.18 16 9 C 0.02 0.31 1.60 3.53 0.01 0.32 16 10 C 0.14 3.09 5.59 86.38 0.48 3.58 16 11 N -0.70 -16.15 5.50 -463.06 -2.55 -18.69 16 12 C 0.54 18.66 7.85 87.66 0.69 19.35 16 13 O -0.57 -25.66 15.86 -3.01 -0.05 -25.70 16 14 C -0.13 -4.78 6.16 71.24 0.44 -4.34 16 15 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 16 C -0.54 -30.36 9.50 67.95 0.65 -29.72 16 17 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 18 C 0.01 0.65 5.49 84.86 0.47 1.12 16 19 N -0.91 -55.50 13.22 21.65 0.29 -55.21 16 20 Si 1.00 42.88 29.55 68.60 2.03 44.91 16 21 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 23 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 24 C -0.15 -2.98 10.10 30.60 0.31 -2.67 16 25 C -0.13 -2.09 10.11 30.60 0.31 -1.78 16 26 C 0.52 11.14 7.66 87.90 0.67 11.81 16 27 O -0.57 -17.15 16.80 -3.02 -0.05 -17.21 16 28 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.06 0.97 7.93 -2.39 -0.02 0.95 16 32 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.11 0.65 7.46 -2.39 -0.02 0.63 16 37 H 0.36 3.91 7.93 -89.69 -0.71 3.20 16 38 H 0.06 1.48 6.68 -2.39 -0.02 1.46 16 39 H 0.06 1.60 7.93 -2.39 -0.02 1.58 16 40 H 0.42 6.69 8.47 -92.71 -0.79 5.91 16 41 H 0.11 3.69 8.14 -2.40 -0.02 3.68 16 42 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.10 1.90 8.07 -2.39 -0.02 1.88 16 45 H 0.09 2.22 7.33 -2.39 -0.02 2.20 16 46 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -82.37 404.38 -1.01 -83.37 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -0.51 Total: 21.46 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 6.32 Total: -0.03 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -7.59 Total: -97.29 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.10 Total: -42.91 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -82.37 -1.01 -83.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670746006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.717 kcal (2) G-P(sol) polarization free energy of solvation -82.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds