Wall clock time and date at job start Sat Apr 11 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47130 * 2 1 4 4 C 1.50704 * 109.46705 * 119.99447 * 2 1 3 5 5 N 1.34780 * 119.99761 * 273.00063 * 4 2 1 6 6 O 1.21281 * 120.00233 * 93.00136 * 4 2 1 7 7 N 1.46893 * 109.47354 * 239.99555 * 2 1 3 8 8 C 1.48678 * 110.99969 * 175.95957 * 7 2 1 9 9 C 1.54705 * 104.63683 * 201.59545 * 8 7 2 10 10 C 1.53033 * 104.57502 * 23.68337 * 9 8 7 11 11 C 1.53900 * 111.33024 * 120.98348 * 10 9 8 12 12 C 1.55130 * 101.45790 * 86.66112 * 11 10 9 13 13 N 1.47547 * 104.97647 * 35.74918 * 12 11 10 14 14 C 1.34771 * 125.67224 * 156.36394 * 13 12 11 15 15 O 1.21287 * 119.99578 * 179.68972 * 14 13 12 16 16 C 1.50698 * 120.00195 * 359.68598 * 14 13 12 17 17 S 1.81007 * 109.47112 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99577 * 180.02562 * 17 16 14 19 19 H 1.07992 * 120.00560 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99601 * 180.02562 * 18 17 16 21 21 N 1.31632 * 120.00181 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00093 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47243 * 59.99372 * 22 20 18 24 24 H 1.48503 * 109.47202 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46714 * 299.99398 * 22 20 18 26 26 C 1.47349 * 108.65334 * 336.09649 * 13 12 11 27 27 C 1.48854 * 111.00343 * 60.28281 * 7 2 1 28 28 H 1.08994 * 109.47352 * 300.00620 * 1 2 3 29 29 H 1.09000 * 109.46856 * 60.00574 * 1 2 3 30 30 H 1.08999 * 109.47130 * 179.97438 * 1 2 3 31 31 H 0.96994 * 120.00105 * 0.02562 * 5 4 2 32 32 H 0.96998 * 119.99504 * 180.02562 * 5 4 2 33 33 H 1.08991 * 110.40327 * 82.80514 * 8 7 2 34 34 H 1.08997 * 110.40233 * 320.38005 * 8 7 2 35 35 H 1.08991 * 110.41262 * 264.90892 * 9 8 7 36 36 H 1.09001 * 110.51617 * 142.50362 * 9 8 7 37 37 H 1.09002 * 111.02476 * 204.70243 * 11 10 9 38 38 H 1.08995 * 111.03070 * 328.57351 * 11 10 9 39 39 H 1.09000 * 110.33935 * 276.87408 * 12 11 10 40 40 H 1.09004 * 110.34384 * 154.62053 * 12 11 10 41 41 H 1.08993 * 109.47038 * 300.00239 * 16 14 13 42 42 H 1.09005 * 109.47174 * 60.00214 * 16 14 13 43 43 H 0.97002 * 120.00042 * 180.02562 * 21 20 18 44 44 H 1.08997 * 109.96667 * 121.30445 * 26 13 12 45 45 H 1.09005 * 109.96446 * 242.53178 * 26 13 12 46 46 H 1.08999 * 110.46598 * 39.27891 * 27 7 2 47 47 H 1.08999 * 110.47120 * 276.68405 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 2.1992 -0.0286 2.3812 6 8 2.2862 -1.8954 1.1856 7 7 2.0197 -0.6925 -1.1993 8 6 3.5027 -0.6282 -1.2835 9 6 3.8202 -0.8678 -2.7785 10 6 2.5425 -0.4574 -3.5141 11 6 2.8154 0.6729 -4.5222 12 6 3.2446 -0.1308 -5.7777 13 7 2.4122 -1.3488 -5.7537 14 6 2.1000 -2.1086 -6.8221 15 8 1.4093 -3.0959 -6.6831 16 6 2.6089 -1.7314 -8.1895 17 16 2.0241 -2.9384 -9.4050 18 6 2.7457 -2.2730 -10.8683 19 1 3.3415 -1.3739 -10.8159 20 6 2.5482 -2.9046 -12.0884 21 7 1.8224 -4.0009 -12.1523 22 14 3.3138 -2.1998 -13.6398 23 1 4.7907 -2.1623 -13.4899 24 1 2.9549 -3.0533 -14.8008 25 1 2.8037 -0.8229 -13.8619 26 6 1.9843 -1.5999 -4.3662 27 6 1.5481 -0.0138 -2.4373 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.9958 0.9191 2.4173 32 1 2.5228 -0.4857 3.1731 33 1 3.9524 -1.4086 -0.6697 34 1 3.8588 0.3538 -0.9721 35 1 4.0399 -1.9204 -2.9565 36 1 4.6577 -0.2464 -3.0956 37 1 1.9113 1.2497 -4.7172 38 1 3.6220 1.3193 -4.1762 39 1 4.3010 -0.3926 -5.7171 40 1 3.0474 0.4450 -6.6820 41 1 2.2397 -0.7406 -8.4540 42 1 3.6989 -1.7229 -8.1819 43 1 1.6847 -4.4425 -13.0049 44 1 0.8959 -1.6100 -4.3084 45 1 2.3843 -2.5530 -4.0201 46 1 1.5783 1.0687 -2.3135 47 1 0.5400 -0.3414 -2.6912 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671066123.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:36 Heat of formation + Delta-G solvation = -92.190488 kcal Electronic energy + Delta-G solvation = -27501.717171 eV Core-core repulsion = 23616.251098 eV Total energy + Delta-G solvation = -3885.466073 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.79202 -40.74449 -39.65262 -37.52790 -34.90473 -34.58667 -34.12493 -32.12556 -30.89415 -30.03060 -29.53112 -27.71072 -26.59117 -24.84756 -23.70317 -22.80690 -20.95122 -20.72784 -20.30390 -19.51835 -18.33184 -18.07064 -17.90346 -17.25754 -16.88295 -16.75173 -16.33662 -16.13717 -15.88204 -15.60485 -15.22940 -15.06230 -14.84389 -14.53893 -14.44805 -14.09403 -13.87962 -13.58711 -13.42188 -13.19053 -13.15360 -13.07589 -12.92619 -12.85866 -12.69848 -12.63238 -12.33634 -12.23865 -11.89339 -11.71472 -11.62288 -11.43029 -11.12680 -10.96885 -10.82857 -10.62571 -10.28524 -9.71145 -9.37345 -8.68930 -8.34164 -6.13656 1.23736 1.44627 1.45076 1.55273 1.56306 1.64139 2.09382 2.27616 2.43460 2.99028 2.99659 3.23092 3.41207 3.45282 3.53709 3.82635 3.90074 4.04043 4.10046 4.15166 4.17442 4.24973 4.29099 4.36228 4.43076 4.56858 4.63765 4.65945 4.72324 4.73318 4.82525 4.84410 4.87341 4.97946 5.03048 5.07006 5.15950 5.24892 5.31361 5.35350 5.41194 5.83797 5.86260 5.99537 6.19605 6.40416 6.53570 7.06273 7.11392 7.40312 8.74954 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.033967 B = 0.001937 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.133969 B =14450.152922 C =14710.080449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.057 3.943 3 H 0.098 0.902 4 C 0.515 3.485 5 N -0.837 5.837 6 O -0.579 6.579 7 N -0.519 5.519 8 C 0.038 3.962 9 C -0.107 4.107 10 C -0.065 4.065 11 C -0.105 4.105 12 C 0.087 3.913 13 N -0.617 5.617 14 C 0.542 3.458 15 O -0.572 6.572 16 C -0.116 4.116 17 S -0.155 6.155 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.001 2.999 23 H -0.261 1.261 24 H -0.279 1.279 25 H -0.260 1.260 26 C 0.126 3.874 27 C 0.056 3.944 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.044 0.956 31 H 0.418 0.582 32 H 0.406 0.594 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.086 0.914 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.993 22.054 29.390 36.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.055 4.055 3 H 0.115 0.885 4 C 0.299 3.701 5 N -0.403 5.403 6 O -0.457 6.457 7 N -0.244 5.244 8 C -0.089 4.089 9 C -0.145 4.145 10 C -0.066 4.066 11 C -0.142 4.142 12 C -0.034 4.034 13 N -0.352 5.352 14 C 0.331 3.669 15 O -0.451 6.451 16 C -0.267 4.267 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.103 0.897 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.822 3.178 23 H -0.186 1.186 24 H -0.204 1.204 25 H -0.185 1.185 26 C 0.003 3.997 27 C -0.071 4.071 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.250 0.750 32 H 0.237 0.763 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.139 0.861 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.104 0.896 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.792 19.135 29.293 35.100 hybrid contribution 1.184 1.390 -0.768 1.981 sum 3.976 20.525 28.524 35.365 Atomic orbital electron populations 1.21794 0.90953 1.02629 1.04409 1.21865 0.98203 0.96859 0.88597 0.88475 1.20883 0.76285 0.86938 0.85974 1.43750 1.69316 1.14955 1.12230 1.90765 1.51593 1.17871 1.85502 1.65282 1.07654 1.50458 1.01048 1.23151 0.87966 1.00915 0.96882 1.22304 0.96743 1.01886 0.93524 1.21373 0.96094 0.94450 0.94678 1.22824 1.04120 0.95635 0.91666 1.22761 0.95194 0.84370 1.01088 1.48613 1.51960 1.27989 1.06614 1.19862 0.79531 0.82080 0.85473 1.90691 1.40007 1.28497 1.85908 1.23284 1.04844 1.04409 0.94209 1.85659 1.69637 1.36493 1.01037 1.23157 1.37747 1.14918 0.93519 0.89745 1.26178 0.95379 0.94962 1.02754 1.70192 1.38269 1.18931 1.27450 0.84971 0.78806 0.78392 0.75614 1.18587 1.20438 1.18453 1.21957 0.99127 0.98477 0.80116 1.23032 0.98272 0.98341 0.87493 0.89381 0.89924 0.93696 0.75045 0.76251 0.92169 0.91357 0.92884 0.88047 0.89071 0.86068 0.89982 0.89456 0.87251 0.87601 0.91989 0.92516 0.93603 0.89596 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.05 71.98 0.65 -0.67 16 2 C 0.06 0.61 2.23 44.17 0.10 0.71 16 3 H 0.10 0.36 7.98 -2.39 -0.02 0.35 16 4 C 0.51 7.83 6.61 87.66 0.58 8.41 16 5 N -0.84 -4.72 8.87 -173.53 -1.54 -6.26 16 6 O -0.58 -15.80 16.77 -3.03 -0.05 -15.85 16 7 N -0.52 -8.43 4.88 -861.45 -4.21 -12.64 16 8 C 0.04 0.57 5.76 86.54 0.50 1.07 16 9 C -0.11 -1.60 6.23 31.19 0.19 -1.41 16 10 C -0.06 -1.00 0.79 -51.80 -0.04 -1.04 16 11 C -0.10 -1.12 5.82 31.63 0.18 -0.93 16 12 C 0.09 1.58 6.62 86.91 0.58 2.16 16 13 N -0.62 -18.09 3.34 -812.66 -2.71 -20.81 16 14 C 0.54 22.22 7.87 87.66 0.69 22.91 16 15 O -0.57 -29.33 16.19 -3.05 -0.05 -29.38 16 16 C -0.12 -4.88 5.17 71.24 0.37 -4.51 16 17 S -0.16 -8.95 20.57 -56.49 -1.16 -10.11 16 18 C -0.55 -31.62 9.50 67.95 0.65 -30.98 16 19 H 0.08 4.50 7.80 -2.91 -0.02 4.47 16 20 C 0.01 0.69 5.49 84.86 0.47 1.15 16 21 N -0.91 -56.96 13.22 21.65 0.29 -56.68 16 22 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 26 C 0.13 3.31 6.11 86.24 0.53 3.84 16 27 C 0.06 0.71 4.47 85.97 0.38 1.09 16 28 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.08 0.60 6.98 -2.39 -0.02 0.59 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.42 -0.78 8.83 -92.71 -0.82 -1.60 16 32 H 0.41 2.05 8.93 -92.71 -0.83 1.22 16 33 H 0.06 1.24 7.54 -2.39 -0.02 1.22 16 34 H 0.07 0.64 7.90 -2.39 -0.02 0.62 16 35 H 0.05 1.10 7.32 -2.39 -0.02 1.08 16 36 H 0.10 1.00 7.49 -2.39 -0.02 0.99 16 37 H 0.09 0.86 8.06 -2.39 -0.02 0.84 16 38 H 0.12 0.54 7.70 -2.39 -0.02 0.53 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.49 7.50 -2.38 -0.02 1.48 16 41 H 0.11 4.09 7.86 -2.40 -0.02 4.07 16 42 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 43 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 44 H 0.06 1.62 7.40 -2.39 -0.02 1.61 16 45 H 0.05 1.43 7.38 -2.38 -0.02 1.42 16 46 H 0.09 0.55 7.72 -2.39 -0.02 0.53 16 47 H 0.08 1.21 7.00 -2.39 -0.02 1.19 16 Total: -1.00 -91.26 388.74 -2.24 -93.50 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -0.65 Total: 10.56 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 5.82 Total: 1.79 kcal Atomic # 7 Polarization: -88.20 SS G_CDS: -8.17 Total: -96.38 kcal Atomic # 8 Polarization: -45.13 SS G_CDS: -0.10 Total: -45.23 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -8.95 SS G_CDS: -1.16 Total: -10.11 kcal Total: -91.26 -2.24 -93.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671066123.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.308 kcal (2) G-P(sol) polarization free energy of solvation -91.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds