Wall clock time and date at job start Sat Apr 11 2020 06:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99464 * 2 1 4 4 N 1.46503 * 109.47130 * 125.00147 * 3 2 1 5 5 C 1.34777 * 120.00191 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99733 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00095 * 180.02562 * 5 4 3 8 8 H 1.09005 * 109.47189 * 300.00383 * 7 5 4 9 9 C 1.52998 * 109.47303 * 60.00318 * 7 5 4 10 10 N 1.46906 * 109.47290 * 180.02562 * 7 5 4 11 11 C 1.47480 * 111.00094 * 166.62644 * 10 7 5 12 12 C 1.53513 * 87.92935 * 221.29711 * 11 10 7 13 13 N 1.46500 * 114.16901 * 272.37625 * 12 11 10 14 14 C 1.46497 * 119.99906 * 33.84084 * 13 12 11 15 15 C 1.34775 * 119.99809 * 213.84541 * 13 12 11 16 16 O 1.21278 * 120.00199 * 359.97438 * 15 13 12 17 17 C 1.50703 * 119.99755 * 180.02562 * 15 13 12 18 18 S 1.81000 * 109.46957 * 179.97438 * 17 15 13 19 19 C 1.76196 * 100.00026 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00176 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00253 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00279 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99753 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46928 * 90.00041 * 23 21 19 25 25 H 1.48507 * 109.47162 * 209.99569 * 23 21 19 26 26 H 1.48494 * 109.47514 * 330.00163 * 23 21 19 27 27 C 1.47476 * 110.99775 * 70.65378 * 10 7 5 28 28 H 1.07997 * 119.99322 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00026 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00475 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47395 * 5.00353 * 3 2 1 32 32 H 1.09005 * 109.47115 * 245.00207 * 3 2 1 33 33 H 0.96995 * 119.99609 * 0.02562 * 4 3 2 34 34 H 1.08994 * 109.47728 * 182.14393 * 9 7 5 35 35 H 1.09003 * 109.46821 * 302.14069 * 9 7 5 36 36 H 1.09000 * 109.46985 * 62.13585 * 9 7 5 37 37 H 1.09004 * 113.47276 * 336.06290 * 11 10 7 38 38 H 1.08998 * 113.47655 * 106.52548 * 11 10 7 39 39 H 1.09001 * 114.34317 * 139.68668 * 12 11 10 40 40 H 1.09003 * 109.47095 * 89.99961 * 14 13 12 41 41 H 1.09002 * 109.47115 * 209.99788 * 14 13 12 42 42 H 1.08997 * 109.47775 * 330.00139 * 14 13 12 43 43 H 1.08990 * 109.46961 * 299.99614 * 17 15 13 44 44 H 1.09006 * 109.47145 * 59.99941 * 17 15 13 45 45 H 0.97003 * 120.00255 * 179.97438 * 22 21 19 46 46 H 1.09006 * 113.47811 * 253.47015 * 27 10 7 47 47 H 1.09001 * 113.47843 * 23.88041 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 3.7789 2.4088 1.3329 6 8 3.7149 3.3557 0.5778 7 6 4.7362 2.4362 2.4964 8 1 4.1788 2.3387 3.4280 9 6 5.7255 1.2759 2.3703 10 7 5.4706 3.7085 2.4965 11 6 6.1747 3.9122 3.7762 12 6 5.7391 5.3831 3.7178 13 7 6.6610 6.2530 2.9833 14 6 7.3928 5.7334 1.8254 15 6 6.8360 7.5313 3.3728 16 8 6.2300 7.9616 4.3312 17 6 7.7840 8.4263 2.6168 18 16 7.7990 10.0687 3.3775 19 6 8.9547 10.8825 2.3255 20 1 9.4089 10.3465 1.5052 21 6 9.2814 12.2125 2.5509 22 7 10.1444 12.8206 1.7647 23 14 8.4965 13.1395 3.9701 24 1 9.3351 12.9856 5.1859 25 1 8.3890 14.5791 3.6219 26 1 7.1415 12.5907 4.2307 27 6 4.5867 4.8288 2.8687 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4028 -0.9314 33 1 3.0451 0.5746 1.7351 34 1 6.3938 1.2729 3.2313 35 1 5.1779 0.3341 2.3322 36 1 6.3094 1.3938 1.4574 37 1 5.7337 3.3614 4.6070 38 1 7.2538 3.7757 3.7046 39 1 5.4278 5.7979 4.6766 40 1 6.8063 5.8975 0.9214 41 1 8.3483 6.2505 1.7375 42 1 7.5682 4.6655 1.9557 43 1 8.7873 8.0019 2.6482 44 1 7.4567 8.5093 1.5804 45 1 10.3725 13.7503 1.9220 46 1 4.3198 5.4693 2.0279 47 1 3.7213 4.5225 3.4564 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671099841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:45 Heat of formation + Delta-G solvation = 4.673733 kcal Electronic energy + Delta-G solvation = -27090.279527 eV Core-core repulsion = 23209.013802 eV Total energy + Delta-G solvation = -3881.265725 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.34775 -39.79877 -38.52989 -36.21410 -34.94266 -33.62156 -32.45351 -32.38890 -29.44066 -27.44354 -27.13000 -26.51226 -25.65822 -25.50744 -23.41767 -21.05503 -20.91987 -20.17802 -18.62632 -17.85386 -17.51467 -17.08671 -16.77306 -16.18619 -16.06258 -15.55315 -15.48374 -14.97256 -14.86270 -14.75602 -14.25319 -13.94626 -13.66552 -13.45076 -13.41792 -12.97936 -12.94778 -12.78129 -12.67748 -12.57574 -12.40078 -12.09602 -11.95244 -11.83872 -11.74454 -11.27285 -11.20162 -11.01244 -10.96603 -10.53175 -10.42468 -9.92993 -9.81327 -9.48444 -9.45826 -9.15330 -8.95888 -8.48386 -8.43159 -6.86562 -6.24313 -3.95549 1.48318 2.29578 2.73529 2.79286 2.96078 3.22200 3.36559 3.54486 3.61425 3.68647 4.14086 4.23169 4.32266 4.37453 4.48119 4.53433 4.56148 4.59382 4.72975 4.95915 5.00641 5.05353 5.13925 5.14610 5.16357 5.21281 5.24891 5.30170 5.37559 5.44051 5.59810 5.66832 5.68744 5.79783 5.87267 5.89391 5.92861 5.99859 6.02374 6.10986 6.11814 6.56467 6.68800 7.06669 7.55373 7.86915 7.98792 8.46737 8.49546 9.21983 10.84924 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024806 B = 0.001927 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.479027 B =14523.417012 C =14796.833684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.732 5.732 5 C 0.517 3.483 6 O -0.514 6.514 7 C 0.027 3.973 8 H 0.074 0.926 9 C -0.139 4.139 10 N -0.443 5.443 11 C -0.013 4.013 12 C 0.123 3.877 13 N -0.596 5.596 14 C 0.085 3.915 15 C 0.535 3.465 16 O -0.521 6.521 17 C -0.119 4.119 18 S -0.145 6.145 19 C -0.520 4.520 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.881 5.881 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.275 1.275 26 H -0.235 1.235 27 C -0.006 4.006 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.400 0.600 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.057 0.943 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.098 0.902 45 H 0.270 0.730 46 H 0.097 0.903 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.970 -32.062 0.376 35.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.024 3.976 4 N -0.386 5.386 5 C 0.302 3.698 6 O -0.388 6.388 7 C -0.085 4.085 8 H 0.091 0.909 9 C -0.196 4.196 10 N -0.166 5.166 11 C -0.143 4.143 12 C 0.017 3.983 13 N -0.330 5.330 14 C -0.058 4.058 15 C 0.323 3.677 16 O -0.396 6.396 17 C -0.269 4.269 18 S 0.082 5.918 19 C -0.667 4.667 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.518 5.518 23 Si 0.682 3.318 24 H -0.193 1.193 25 H -0.200 1.200 26 H -0.159 1.159 27 C -0.136 4.136 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.133 0.867 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.234 0.766 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.115 0.885 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.438 -30.559 0.504 34.241 hybrid contribution 0.012 -0.661 0.178 0.685 sum -15.426 -31.221 0.683 34.830 Atomic orbital electron populations 1.24014 0.95808 1.02540 0.97860 1.22998 0.96243 0.98056 1.02341 1.20396 0.91787 0.95542 0.89874 1.45986 1.41362 1.20162 1.31073 1.20457 0.80528 0.82320 0.86466 1.90756 1.66882 1.34891 1.46226 1.22273 0.95157 0.94662 0.96409 0.90864 1.21722 0.98838 0.95135 1.03942 1.69075 1.16793 1.00488 1.30251 1.24342 1.02017 0.96025 0.91887 1.21904 0.90275 0.89617 0.96547 1.47383 1.43876 1.10564 1.31226 1.21801 0.95881 1.00564 0.87590 1.20333 0.82197 0.81123 0.84070 1.90676 1.47790 1.73477 1.27643 1.23301 1.00993 0.99474 1.03142 1.84750 1.59599 1.03559 1.43916 1.22320 1.27609 0.99705 1.17093 0.89375 1.24707 0.94010 0.96404 0.96177 1.69942 1.32023 1.12183 1.37606 0.86734 0.82538 0.79912 0.82661 1.19250 1.19992 1.15918 1.24273 0.95534 0.93743 1.00097 0.87808 0.88092 0.86677 0.91063 0.90563 0.76637 0.91230 0.91881 0.90962 0.90147 0.88657 0.86680 0.92451 0.91291 0.90091 0.88456 0.88387 0.91994 0.88480 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.62 14.32 29.01 0.42 -0.21 16 2 C -0.18 -0.74 9.63 -36.03 -0.35 -1.08 16 3 C 0.15 0.94 6.11 -5.19 -0.03 0.90 16 4 N -0.73 -4.53 5.43 -61.47 -0.33 -4.86 16 5 C 0.52 4.82 6.96 -10.99 -0.08 4.75 16 6 O -0.51 -7.18 15.51 5.56 0.09 -7.09 16 7 C 0.03 0.20 2.07 -68.86 -0.14 0.06 16 8 H 0.07 0.41 7.56 -51.93 -0.39 0.02 16 9 C -0.14 -0.71 9.18 37.16 0.34 -0.37 16 10 N -0.44 -4.27 4.39 -238.01 -1.05 -5.31 16 11 C -0.01 -0.11 6.02 -7.55 -0.05 -0.16 16 12 C 0.12 1.48 4.67 -67.72 -0.32 1.16 16 13 N -0.60 -8.66 3.11 -173.62 -0.54 -9.20 16 14 C 0.08 1.03 9.33 59.85 0.56 1.59 16 15 C 0.53 10.09 7.69 -10.98 -0.08 10.00 16 16 O -0.52 -11.51 15.37 5.56 0.09 -11.43 16 17 C -0.12 -2.42 4.71 36.01 0.17 -2.25 16 18 S -0.14 -3.76 18.55 -107.50 -1.99 -5.76 16 19 C -0.52 -15.26 10.04 30.94 0.31 -14.95 16 20 H 0.09 2.70 8.03 -52.48 -0.42 2.27 16 21 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 22 N -0.88 -26.93 13.97 55.49 0.78 -26.16 16 23 Si 0.86 22.14 27.74 -169.99 -4.72 17.42 16 24 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.27 -6.83 7.11 56.52 0.40 -6.42 16 26 H -0.24 -6.08 6.74 56.52 0.38 -5.70 16 27 C -0.01 -0.07 6.15 -7.55 -0.05 -0.12 16 28 H 0.10 0.27 8.06 -52.49 -0.42 -0.16 16 29 H 0.10 0.39 7.84 -52.49 -0.41 -0.02 16 30 H 0.12 0.34 8.06 -52.49 -0.42 -0.09 16 31 H 0.07 0.53 7.79 -51.93 -0.40 0.13 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.40 1.35 7.85 -40.82 -0.32 1.03 16 34 H 0.07 0.31 7.70 -51.93 -0.40 -0.09 16 35 H 0.06 0.19 7.50 -51.93 -0.39 -0.20 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.50 7.71 -51.93 -0.40 0.10 16 38 H 0.10 0.80 7.25 -51.93 -0.38 0.42 16 39 H 0.12 1.50 7.28 -51.93 -0.38 1.12 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.83 6.44 -51.93 -0.33 0.49 16 42 H 0.08 0.86 5.68 -51.93 -0.29 0.56 16 43 H 0.10 1.84 7.40 -51.92 -0.38 1.46 16 44 H 0.10 1.91 8.11 -51.91 -0.42 1.49 16 45 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.10 1.37 8.03 -51.93 -0.42 0.96 16 47 H 0.07 0.70 7.76 -51.93 -0.40 0.29 16 LS Contribution 396.21 15.07 5.97 5.97 Total: -1.00 -36.71 396.21 -8.52 -45.23 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.42 Total: -0.88 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: 0.61 Total: 2.07 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -1.14 Total: -45.53 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: 0.17 Total: -18.52 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.72 Total: 17.42 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -1.99 Total: -5.76 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.71 -8.52 -45.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671099841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.901 kcal (2) G-P(sol) polarization free energy of solvation -36.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds