Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99464 * 2 1 4 4 N 1.46503 * 109.47130 * 125.00147 * 3 2 1 5 5 C 1.34777 * 120.00191 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99733 * 0.02562 * 5 4 3 7 7 C 1.50695 * 120.00095 * 180.02562 * 5 4 3 8 8 H 1.09005 * 109.47189 * 300.00383 * 7 5 4 9 9 C 1.52998 * 109.47303 * 60.00318 * 7 5 4 10 10 N 1.46906 * 109.47290 * 180.02562 * 7 5 4 11 11 C 1.47480 * 111.00094 * 166.62644 * 10 7 5 12 12 C 1.53513 * 87.92935 * 221.29711 * 11 10 7 13 13 N 1.46500 * 114.16901 * 272.37625 * 12 11 10 14 14 C 1.46497 * 119.99906 * 33.84084 * 13 12 11 15 15 C 1.34775 * 119.99809 * 213.84541 * 13 12 11 16 16 O 1.21278 * 120.00199 * 359.97438 * 15 13 12 17 17 C 1.50703 * 119.99755 * 180.02562 * 15 13 12 18 18 S 1.81000 * 109.46957 * 179.97438 * 17 15 13 19 19 C 1.76196 * 100.00026 * 179.97438 * 18 17 15 20 20 H 1.08004 * 120.00176 * 0.02562 * 19 18 17 21 21 C 1.38797 * 120.00253 * 180.02562 * 19 18 17 22 22 N 1.31629 * 120.00279 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 119.99753 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46928 * 90.00041 * 23 21 19 25 25 H 1.48507 * 109.47162 * 209.99569 * 23 21 19 26 26 H 1.48494 * 109.47514 * 330.00163 * 23 21 19 27 27 C 1.47476 * 110.99775 * 70.65378 * 10 7 5 28 28 H 1.07997 * 119.99322 * 180.02562 * 1 2 3 29 29 H 1.07996 * 120.00026 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00475 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47395 * 5.00353 * 3 2 1 32 32 H 1.09005 * 109.47115 * 245.00207 * 3 2 1 33 33 H 0.96995 * 119.99609 * 0.02562 * 4 3 2 34 34 H 1.08994 * 109.47728 * 182.14393 * 9 7 5 35 35 H 1.09003 * 109.46821 * 302.14069 * 9 7 5 36 36 H 1.09000 * 109.46985 * 62.13585 * 9 7 5 37 37 H 1.09004 * 113.47276 * 336.06290 * 11 10 7 38 38 H 1.08998 * 113.47655 * 106.52548 * 11 10 7 39 39 H 1.09001 * 114.34317 * 139.68668 * 12 11 10 40 40 H 1.09003 * 109.47095 * 89.99961 * 14 13 12 41 41 H 1.09002 * 109.47115 * 209.99788 * 14 13 12 42 42 H 1.08997 * 109.47775 * 330.00139 * 14 13 12 43 43 H 1.08990 * 109.46961 * 299.99614 * 17 15 13 44 44 H 1.09006 * 109.47145 * 59.99941 * 17 15 13 45 45 H 0.97003 * 120.00255 * 179.97438 * 22 21 19 46 46 H 1.09006 * 113.47811 * 253.47015 * 27 10 7 47 47 H 1.09001 * 113.47843 * 23.88041 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9937 1.3321 1.1314 5 6 3.7789 2.4088 1.3329 6 8 3.7149 3.3557 0.5778 7 6 4.7362 2.4362 2.4964 8 1 4.1788 2.3387 3.4280 9 6 5.7255 1.2759 2.3703 10 7 5.4706 3.7085 2.4965 11 6 6.1747 3.9122 3.7762 12 6 5.7391 5.3831 3.7178 13 7 6.6610 6.2530 2.9833 14 6 7.3928 5.7334 1.8254 15 6 6.8360 7.5313 3.3728 16 8 6.2300 7.9616 4.3312 17 6 7.7840 8.4263 2.6168 18 16 7.7990 10.0687 3.3775 19 6 8.9547 10.8825 2.3255 20 1 9.4089 10.3465 1.5052 21 6 9.2814 12.2125 2.5509 22 7 10.1444 12.8206 1.7647 23 14 8.4965 13.1395 3.9701 24 1 9.3351 12.9856 5.1859 25 1 8.3890 14.5791 3.6219 26 1 7.1415 12.5907 4.2307 27 6 4.5867 4.8288 2.8687 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6212 1.4028 -0.9314 33 1 3.0451 0.5746 1.7351 34 1 6.3938 1.2729 3.2313 35 1 5.1779 0.3341 2.3322 36 1 6.3094 1.3938 1.4574 37 1 5.7337 3.3614 4.6070 38 1 7.2538 3.7757 3.7046 39 1 5.4278 5.7979 4.6766 40 1 6.8063 5.8975 0.9214 41 1 8.3483 6.2505 1.7375 42 1 7.5682 4.6655 1.9557 43 1 8.7873 8.0019 2.6482 44 1 7.4567 8.5093 1.5804 45 1 10.3725 13.7503 1.9220 46 1 4.3198 5.4693 2.0279 47 1 3.7213 4.5225 3.4564 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671099841.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = -23.297171 kcal Electronic energy + Delta-G solvation = -27091.492437 eV Core-core repulsion = 23209.013802 eV Total energy + Delta-G solvation = -3882.478634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.19740 -40.76025 -39.69082 -36.79302 -36.09102 -34.67368 -34.29050 -33.06150 -30.88534 -28.44101 -27.88019 -27.71830 -27.25752 -26.46956 -24.08166 -22.10523 -21.54473 -20.67834 -20.03189 -19.44985 -18.51900 -18.01822 -17.68755 -17.21936 -17.03343 -16.88666 -16.66592 -16.35772 -16.02041 -15.54776 -15.34946 -15.01513 -14.87057 -14.62556 -14.53031 -14.13396 -13.89539 -13.62368 -13.46566 -13.43271 -13.31978 -13.27174 -13.16622 -13.01371 -12.93114 -12.66632 -12.46862 -12.12342 -12.06901 -11.88878 -11.78353 -11.16922 -11.01172 -10.93169 -10.53982 -10.50327 -10.06492 -9.88383 -9.67381 -9.00550 -8.51372 -6.22694 0.96457 1.14672 1.31335 1.44838 1.47874 1.53754 1.61058 2.03131 2.24396 2.25482 2.68043 2.86607 2.93191 3.44043 3.55804 3.65893 3.79524 3.86954 3.95818 4.09138 4.13228 4.14320 4.26778 4.31219 4.37714 4.45213 4.53373 4.57255 4.67562 4.72357 4.79869 4.81777 4.86866 4.88604 4.98033 5.04414 5.12739 5.32492 5.35020 5.56665 5.61917 5.70785 5.75698 5.88618 6.11207 6.25584 6.54957 6.93397 7.05750 7.25425 8.61100 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024806 B = 0.001927 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.479027 B =14523.417012 C =14796.833684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.178 4.178 3 C 0.146 3.854 4 N -0.715 5.715 5 C 0.512 3.488 6 O -0.571 6.571 7 C 0.029 3.971 8 H 0.101 0.899 9 C -0.133 4.133 10 N -0.458 5.458 11 C 0.008 3.992 12 C 0.104 3.896 13 N -0.584 5.584 14 C 0.085 3.915 15 C 0.535 3.465 16 O -0.560 6.560 17 C -0.106 4.106 18 S -0.172 6.172 19 C -0.530 4.530 20 H 0.061 0.939 21 C 0.046 3.954 22 N -0.916 5.916 23 Si 0.915 3.085 24 H -0.260 1.260 25 H -0.258 1.258 26 H -0.238 1.238 27 C 0.002 3.998 28 H 0.121 0.879 29 H 0.095 0.905 30 H 0.134 0.866 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.416 0.584 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.105 0.895 45 H 0.277 0.723 46 H 0.060 0.940 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.703 -35.302 1.890 38.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.197 4.197 3 C 0.023 3.977 4 N -0.369 5.369 5 C 0.298 3.702 6 O -0.449 6.449 7 C -0.083 4.083 8 H 0.118 0.882 9 C -0.191 4.191 10 N -0.182 5.182 11 C -0.121 4.121 12 C -0.001 4.001 13 N -0.316 5.316 14 C -0.057 4.057 15 C 0.323 3.677 16 O -0.438 6.438 17 C -0.256 4.256 18 S 0.054 5.946 19 C -0.678 4.678 20 H 0.079 0.921 21 C -0.159 4.159 22 N -0.554 5.554 23 Si 0.737 3.263 24 H -0.184 1.184 25 H -0.183 1.183 26 H -0.162 1.162 27 C -0.129 4.129 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.152 0.848 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.254 0.746 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.091 0.909 42 H 0.122 0.878 43 H 0.132 0.868 44 H 0.123 0.877 45 H 0.087 0.913 46 H 0.078 0.922 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.175 -33.894 2.010 37.610 hybrid contribution 0.176 0.148 -0.413 0.473 sum -16.000 -33.745 1.597 37.380 Atomic orbital electron populations 1.24176 0.95810 1.03140 0.96911 1.22944 0.96245 0.97365 1.03104 1.20356 0.91505 0.96505 0.89359 1.45876 1.40160 1.19902 1.30927 1.20961 0.80723 0.82028 0.86483 1.90741 1.68728 1.37034 1.48352 1.22384 0.95363 0.94155 0.96404 0.88165 1.21736 0.98545 0.95120 1.03686 1.69019 1.16848 1.01175 1.31143 1.24301 1.02628 0.92750 0.92403 1.22169 0.90786 0.91287 0.95880 1.47343 1.43554 1.09342 1.31339 1.21925 0.95505 1.01917 0.86375 1.20003 0.81781 0.82325 0.83579 1.90657 1.49363 1.74515 1.29313 1.23272 1.02778 0.96475 1.03107 1.84630 1.58498 1.07391 1.44063 1.22455 1.28192 1.00211 1.16938 0.92100 1.25566 0.94472 0.97277 0.98599 1.70018 1.33226 1.12947 1.39222 0.85856 0.81462 0.79270 0.79710 1.18447 1.18250 1.16205 1.24122 0.96004 0.94131 0.98608 0.86093 0.88678 0.84844 0.92709 0.92051 0.74631 0.89762 0.89373 0.92725 0.86840 0.87824 0.87754 0.93191 0.90894 0.87776 0.86818 0.87724 0.91340 0.92166 0.89185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 14.32 67.78 0.97 0.01 16 2 C -0.18 -1.16 9.63 25.64 0.25 -0.91 16 3 C 0.15 1.79 6.11 85.63 0.52 2.32 16 4 N -0.71 -7.64 5.43 -466.78 -2.53 -10.17 16 5 C 0.51 8.93 6.96 87.66 0.61 9.54 16 6 O -0.57 -16.27 15.51 -3.02 -0.05 -16.32 16 7 C 0.03 0.33 2.07 44.17 0.09 0.43 16 8 H 0.10 0.67 7.56 -2.38 -0.02 0.65 16 9 C -0.13 -0.87 9.18 71.98 0.66 -0.21 16 10 N -0.46 -7.86 4.39 -906.92 -3.98 -11.85 16 11 C 0.01 0.11 6.02 83.58 0.50 0.61 16 12 C 0.10 2.36 4.67 45.45 0.21 2.58 16 13 N -0.58 -16.53 3.11 -821.61 -2.56 -19.09 16 14 C 0.08 1.98 9.33 127.77 1.19 3.17 16 15 C 0.54 20.18 7.69 87.66 0.67 20.85 16 16 O -0.56 -24.97 15.37 -3.02 -0.05 -25.01 16 17 C -0.11 -4.31 4.71 71.24 0.34 -3.98 16 18 S -0.17 -9.05 18.55 -56.49 -1.05 -10.10 16 19 C -0.53 -31.79 10.04 67.95 0.68 -31.11 16 20 H 0.06 3.85 8.03 -2.91 -0.02 3.83 16 21 C 0.05 2.78 5.50 84.86 0.47 3.24 16 22 N -0.92 -56.76 13.97 21.65 0.30 -56.46 16 23 Si 0.92 45.89 27.74 68.60 1.90 47.80 16 24 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 25 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 27 C 0.00 0.03 6.15 83.58 0.51 0.55 16 28 H 0.12 0.32 8.06 -2.91 -0.02 0.30 16 29 H 0.09 0.66 7.84 -2.91 -0.02 0.64 16 30 H 0.13 0.40 8.06 -2.91 -0.02 0.38 16 31 H 0.05 0.85 7.79 -2.39 -0.02 0.83 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.42 1.53 7.85 -92.71 -0.73 0.80 16 34 H 0.08 0.35 7.70 -2.39 -0.02 0.33 16 35 H 0.09 0.14 7.50 -2.39 -0.02 0.13 16 36 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.11 0.86 7.71 -2.38 -0.02 0.84 16 38 H 0.10 1.32 7.25 -2.39 -0.02 1.30 16 39 H 0.10 2.63 7.28 -2.39 -0.02 2.61 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.65 6.44 -2.39 -0.02 1.64 16 42 H 0.10 1.98 5.68 -2.39 -0.01 1.96 16 43 H 0.11 4.25 7.40 -2.40 -0.02 4.24 16 44 H 0.10 4.12 8.11 -2.39 -0.02 4.10 16 45 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 46 H 0.06 1.77 8.03 -2.38 -0.02 1.75 16 47 H 0.09 1.59 7.76 -2.39 -0.02 1.57 16 Total: -1.00 -82.89 396.21 -0.12 -83.01 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.20 Total: 11.10 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 7.68 Total: 7.08 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -8.77 Total: -97.56 kcal Atomic # 8 Polarization: -41.24 SS G_CDS: -0.09 Total: -41.33 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.90 Total: 47.80 kcal Atomic # 16 Polarization: -9.05 SS G_CDS: -1.05 Total: -10.10 kcal Total: -82.89 -0.12 -83.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671099841.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.716 kcal (2) G-P(sol) polarization free energy of solvation -82.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds