Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00016 * 2 1 4 4 N 1.46499 * 109.47550 * 124.99989 * 3 2 1 5 5 C 1.34777 * 120.00199 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 3 8 8 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 9 9 C 1.52996 * 109.46842 * 299.72137 * 7 5 4 10 10 N 1.46902 * 109.47027 * 179.72353 * 7 5 4 11 11 C 1.47479 * 110.99603 * 275.97016 * 10 7 5 12 12 C 1.53514 * 87.92939 * 221.29709 * 11 10 7 13 13 N 1.46499 * 114.17118 * 272.37823 * 12 11 10 14 14 C 1.46500 * 120.00022 * 33.83716 * 13 12 11 15 15 C 1.34776 * 120.00175 * 213.84472 * 13 12 11 16 16 O 1.21278 * 120.00076 * 359.97438 * 15 13 12 17 17 C 1.50703 * 120.00125 * 180.02562 * 15 13 12 18 18 S 1.80998 * 109.47113 * 179.97438 * 17 15 13 19 19 C 1.76199 * 99.99979 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99991 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99960 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00029 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99942 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47336 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46826 * 120.00498 * 23 21 19 26 26 H 1.48502 * 109.47447 * 240.00151 * 23 21 19 27 27 C 1.47478 * 110.99765 * 179.97438 * 10 7 5 28 28 H 1.07995 * 120.00110 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00191 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99922 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47333 * 4.99583 * 3 2 1 32 32 H 1.09002 * 109.47271 * 245.00017 * 3 2 1 33 33 H 0.97000 * 119.99484 * 359.97438 * 4 3 2 34 34 H 1.09002 * 109.47575 * 299.99754 * 9 7 5 35 35 H 1.09001 * 109.47551 * 59.99933 * 9 7 5 36 36 H 1.09003 * 109.46851 * 180.02562 * 9 7 5 37 37 H 1.09003 * 113.47830 * 336.06166 * 11 10 7 38 38 H 1.09001 * 113.47695 * 106.53290 * 11 10 7 39 39 H 1.08997 * 114.17078 * 139.67073 * 12 11 10 40 40 H 1.09010 * 109.46755 * 90.00429 * 14 13 12 41 41 H 1.08996 * 109.47404 * 209.99795 * 14 13 12 42 42 H 1.08996 * 109.47326 * 330.00726 * 14 13 12 43 43 H 1.09002 * 109.46732 * 299.99521 * 17 15 13 44 44 H 1.09003 * 109.47102 * 59.99374 * 17 15 13 45 45 H 0.96999 * 120.00068 * 180.02562 * 22 21 19 46 46 H 1.08998 * 113.47375 * 253.46734 * 27 10 7 47 47 H 1.09004 * 113.47700 * 23.87607 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4091 1.3334 6 8 3.7144 3.3560 0.5782 7 6 4.7397 2.4341 2.4936 8 1 5.4420 1.6058 2.4015 9 6 3.9612 2.2994 3.8039 10 7 5.4775 3.7044 2.4908 11 6 6.6385 3.6391 1.5837 12 6 7.4436 4.3953 2.6498 13 7 7.3497 5.8539 2.5500 14 6 6.1052 6.4783 2.0945 15 6 8.4082 6.6213 2.8772 16 8 9.4384 6.1044 3.2546 17 6 8.3114 8.1217 2.7750 18 16 9.8833 8.8635 3.2799 19 6 9.4982 10.5699 3.0687 20 1 8.5192 10.8633 2.7197 21 6 10.4528 11.5369 3.3519 22 7 11.6459 11.1792 3.7778 23 14 10.0448 13.3459 3.1273 24 1 8.6481 13.4818 2.6413 25 1 10.1870 14.0504 4.4268 26 1 10.9747 13.9438 2.1358 27 6 6.4296 3.7650 3.6155 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.0446 0.5748 1.7355 34 1 3.2588 3.1278 3.8961 35 1 3.4137 1.3569 3.8060 36 1 4.6566 2.3180 4.6431 37 1 6.9959 2.6245 1.4081 38 1 6.5013 4.2039 0.6615 39 1 8.4645 4.0352 2.7769 40 1 5.4636 6.6782 2.9528 41 1 6.3335 7.4148 1.5857 42 1 5.5923 5.8065 1.4063 43 1 8.0911 8.4023 1.7451 44 1 7.5149 8.4797 3.4275 45 1 12.3128 11.8551 3.9760 46 1 6.1155 4.4363 4.4146 47 1 6.7305 2.7839 3.9830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671099842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 4.526399 kcal Electronic energy + Delta-G solvation = -27000.721916 eV Core-core repulsion = 23119.449802 eV Total energy + Delta-G solvation = -3881.272114 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.28766 -39.75676 -38.46323 -36.19600 -34.89395 -33.55043 -32.39813 -32.38252 -29.30181 -27.55328 -27.06544 -26.10438 -25.90329 -25.41342 -23.31754 -21.04705 -20.82353 -20.13867 -18.54698 -17.82794 -17.53847 -17.04311 -16.69660 -16.26448 -15.84176 -15.47931 -15.39885 -15.14458 -14.76504 -14.50997 -14.35329 -13.92721 -13.68412 -13.42140 -13.31459 -13.00058 -12.89626 -12.65448 -12.57408 -12.50393 -12.35558 -11.98410 -11.82707 -11.74718 -11.71277 -11.15186 -11.04317 -10.99689 -10.96823 -10.70629 -10.42914 -9.92773 -9.74937 -9.47111 -9.35461 -9.08385 -9.03097 -8.40196 -8.16987 -6.45033 -6.17606 -3.87497 1.48600 2.32874 2.79913 2.95683 3.07356 3.24900 3.29636 3.34793 3.62968 3.74299 4.16374 4.23088 4.24694 4.38581 4.48252 4.53241 4.58793 4.61936 4.98261 5.00812 5.03551 5.08042 5.16261 5.17660 5.22116 5.25787 5.34664 5.44314 5.50149 5.55233 5.65116 5.68086 5.79069 5.88047 5.88379 5.93009 5.95373 6.00044 6.11462 6.13529 6.23754 6.60008 6.77843 7.09289 7.64106 7.66242 7.89842 8.40124 8.61875 9.28019 10.89914 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026433 B = 0.001852 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.013790 B =15112.620826 C =15735.994540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.733 5.733 5 C 0.520 3.480 6 O -0.515 6.515 7 C 0.027 3.973 8 H 0.075 0.925 9 C -0.144 4.144 10 N -0.442 5.442 11 C -0.010 4.010 12 C 0.125 3.875 13 N -0.598 5.598 14 C 0.084 3.916 15 C 0.536 3.464 16 O -0.519 6.519 17 C -0.148 4.148 18 S -0.063 6.063 19 C -0.533 4.533 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.271 1.271 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.014 4.014 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.115 0.885 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.399 0.601 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.267 0.733 46 H 0.093 0.907 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.654 -25.879 -4.226 34.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.024 3.976 4 N -0.387 5.387 5 C 0.305 3.695 6 O -0.388 6.388 7 C -0.085 4.085 8 H 0.093 0.907 9 C -0.201 4.201 10 N -0.165 5.165 11 C -0.140 4.140 12 C 0.018 3.982 13 N -0.333 5.333 14 C -0.059 4.059 15 C 0.324 3.676 16 O -0.394 6.394 17 C -0.298 4.298 18 S 0.163 5.837 19 C -0.681 4.681 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.145 4.145 28 H 0.119 0.881 29 H 0.122 0.878 30 H 0.133 0.867 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.233 0.767 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.111 0.889 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -20.548 -25.349 -4.272 32.909 hybrid contribution -1.143 0.503 -0.244 1.272 sum -21.691 -24.846 -4.515 33.289 Atomic orbital electron populations 1.24009 0.95801 1.02526 0.97885 1.23001 0.96254 0.98070 1.02317 1.20383 0.91822 0.95541 0.89818 1.45998 1.41580 1.20123 1.30988 1.20444 0.80958 0.82139 0.85962 1.90729 1.67156 1.34691 1.46219 1.22256 0.96764 0.94541 0.94952 0.90739 1.21804 1.00747 1.02615 0.94959 1.69039 1.14503 1.27907 1.05038 1.24319 0.90209 1.00369 0.99066 1.21870 0.99684 0.81580 0.95051 1.47440 1.14062 1.04263 1.67505 1.21803 0.85414 0.98488 1.00194 1.20376 0.82328 0.88961 0.75922 1.90678 1.29054 1.74639 1.44999 1.23547 1.07735 0.93428 1.05129 1.85353 1.09261 1.02457 1.86579 1.22915 1.02142 0.91223 1.51858 0.90865 1.24986 0.94460 0.99549 0.94591 1.70033 1.03966 1.34105 1.42254 0.86122 0.78537 0.82895 0.77980 1.19596 1.20604 1.20593 1.24383 0.92622 1.01069 0.96380 0.88089 0.87828 0.86710 0.91031 0.90679 0.76652 0.91039 0.91753 0.91031 0.90492 0.88566 0.86635 0.92932 0.91454 0.89510 0.89153 0.89182 0.92296 0.88866 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.60 14.32 29.01 0.42 -0.19 16 2 C -0.18 -0.72 9.63 -36.03 -0.35 -1.07 16 3 C 0.15 0.91 6.11 -5.20 -0.03 0.88 16 4 N -0.73 -4.51 5.44 -61.47 -0.33 -4.84 16 5 C 0.52 4.82 7.10 -10.98 -0.08 4.75 16 6 O -0.51 -7.02 16.23 5.55 0.09 -6.93 16 7 C 0.03 0.21 2.14 -68.86 -0.15 0.06 16 8 H 0.07 0.43 7.52 -51.93 -0.39 0.04 16 9 C -0.14 -0.83 8.99 37.16 0.33 -0.50 16 10 N -0.44 -4.42 4.26 -237.83 -1.01 -5.44 16 11 C -0.01 -0.10 6.38 -7.48 -0.05 -0.15 16 12 C 0.12 1.55 4.66 -67.70 -0.32 1.24 16 13 N -0.60 -9.08 3.11 -173.60 -0.54 -9.62 16 14 C 0.08 1.11 9.33 59.85 0.56 1.67 16 15 C 0.54 10.55 7.69 -10.98 -0.08 10.46 16 16 O -0.52 -11.97 15.38 5.56 0.09 -11.89 16 17 C -0.15 -3.13 4.71 36.01 0.17 -2.96 16 18 S -0.06 -1.75 20.57 -107.50 -2.21 -3.96 16 19 C -0.53 -15.46 9.50 30.94 0.29 -15.17 16 20 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.47 13.22 55.49 0.73 -25.74 16 23 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 27 C -0.01 -0.14 6.08 -7.46 -0.05 -0.19 16 28 H 0.10 0.37 7.84 -52.49 -0.41 -0.04 16 29 H 0.10 0.26 8.06 -52.49 -0.42 -0.17 16 30 H 0.11 0.34 8.06 -52.49 -0.42 -0.09 16 31 H 0.07 0.52 7.79 -51.93 -0.40 0.11 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 1.38 7.89 -40.82 -0.32 1.05 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.23 7.57 -51.93 -0.39 -0.16 16 36 H 0.07 0.39 7.03 -51.93 -0.36 0.02 16 37 H 0.08 0.64 7.54 -51.93 -0.39 0.25 16 38 H 0.10 1.16 7.25 -51.93 -0.38 0.78 16 39 H 0.12 1.56 7.29 -51.93 -0.38 1.18 16 40 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 41 H 0.07 0.89 6.44 -51.93 -0.33 0.55 16 42 H 0.09 1.12 5.68 -51.93 -0.29 0.83 16 43 H 0.09 1.80 7.40 -51.92 -0.38 1.41 16 44 H 0.09 1.79 8.11 -51.91 -0.42 1.37 16 45 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.08 0.59 7.66 -51.93 -0.40 0.19 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -36.73 399.06 -8.97 -45.70 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.35 Total: -0.88 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 0.58 Total: 0.85 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -1.16 Total: -45.64 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.18 Total: -18.82 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.75 SS G_CDS: -2.21 Total: -3.96 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.73 -8.97 -45.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671099842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.229 kcal (2) G-P(sol) polarization free energy of solvation -36.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds