Wall clock time and date at job start Sat Apr 11 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50694 * 120.00016 * 2 1 4 4 N 1.46499 * 109.47550 * 124.99989 * 3 2 1 5 5 C 1.34777 * 120.00199 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99750 * 359.97438 * 5 4 3 7 7 C 1.50702 * 119.99928 * 180.27479 * 5 4 3 8 8 H 1.08994 * 109.46990 * 59.72065 * 7 5 4 9 9 C 1.52996 * 109.46842 * 299.72137 * 7 5 4 10 10 N 1.46902 * 109.47027 * 179.72353 * 7 5 4 11 11 C 1.47479 * 110.99603 * 275.97016 * 10 7 5 12 12 C 1.53514 * 87.92939 * 221.29709 * 11 10 7 13 13 N 1.46499 * 114.17118 * 272.37823 * 12 11 10 14 14 C 1.46500 * 120.00022 * 33.83716 * 13 12 11 15 15 C 1.34776 * 120.00175 * 213.84472 * 13 12 11 16 16 O 1.21278 * 120.00076 * 359.97438 * 15 13 12 17 17 C 1.50703 * 120.00125 * 180.02562 * 15 13 12 18 18 S 1.80998 * 109.47113 * 179.97438 * 17 15 13 19 19 C 1.76199 * 99.99979 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99991 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99960 * 179.97438 * 19 18 17 22 22 N 1.31635 * 120.00029 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99942 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47336 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46826 * 120.00498 * 23 21 19 26 26 H 1.48502 * 109.47447 * 240.00151 * 23 21 19 27 27 C 1.47478 * 110.99765 * 179.97438 * 10 7 5 28 28 H 1.07995 * 120.00110 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00191 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.99922 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47333 * 4.99583 * 3 2 1 32 32 H 1.09002 * 109.47271 * 245.00017 * 3 2 1 33 33 H 0.97000 * 119.99484 * 359.97438 * 4 3 2 34 34 H 1.09002 * 109.47575 * 299.99754 * 9 7 5 35 35 H 1.09001 * 109.47551 * 59.99933 * 9 7 5 36 36 H 1.09003 * 109.46851 * 180.02562 * 9 7 5 37 37 H 1.09003 * 113.47830 * 336.06166 * 11 10 7 38 38 H 1.09001 * 113.47695 * 106.53290 * 11 10 7 39 39 H 1.08997 * 114.17078 * 139.67073 * 12 11 10 40 40 H 1.09010 * 109.46755 * 90.00429 * 14 13 12 41 41 H 1.08996 * 109.47404 * 209.99795 * 14 13 12 42 42 H 1.08996 * 109.47326 * 330.00726 * 14 13 12 43 43 H 1.09002 * 109.46732 * 299.99521 * 17 15 13 44 44 H 1.09003 * 109.47102 * 59.99374 * 17 15 13 45 45 H 0.96999 * 120.00068 * 180.02562 * 22 21 19 46 46 H 1.08998 * 113.47375 * 253.46734 * 27 10 7 47 47 H 1.09004 * 113.47700 * 23.87607 * 27 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7783 2.4091 1.3334 6 8 3.7144 3.3560 0.5782 7 6 4.7397 2.4341 2.4936 8 1 5.4420 1.6058 2.4015 9 6 3.9612 2.2994 3.8039 10 7 5.4775 3.7044 2.4908 11 6 6.6385 3.6391 1.5837 12 6 7.4436 4.3953 2.6498 13 7 7.3497 5.8539 2.5500 14 6 6.1052 6.4783 2.0945 15 6 8.4082 6.6213 2.8772 16 8 9.4384 6.1044 3.2546 17 6 8.3114 8.1217 2.7750 18 16 9.8833 8.8635 3.2799 19 6 9.4982 10.5699 3.0687 20 1 8.5192 10.8633 2.7197 21 6 10.4528 11.5369 3.3519 22 7 11.6459 11.1792 3.7778 23 14 10.0448 13.3459 3.1273 24 1 8.6481 13.4818 2.6413 25 1 10.1870 14.0504 4.4268 26 1 10.9747 13.9438 2.1358 27 6 6.4296 3.7650 3.6155 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6213 1.4026 -0.9314 33 1 3.0446 0.5748 1.7355 34 1 3.2588 3.1278 3.8961 35 1 3.4137 1.3569 3.8060 36 1 4.6566 2.3180 4.6431 37 1 6.9959 2.6245 1.4081 38 1 6.5013 4.2039 0.6615 39 1 8.4645 4.0352 2.7769 40 1 5.4636 6.6782 2.9528 41 1 6.3335 7.4148 1.5857 42 1 5.5923 5.8065 1.4063 43 1 8.0911 8.4023 1.7451 44 1 7.5149 8.4797 3.4275 45 1 12.3128 11.8551 3.9760 46 1 6.1155 4.4363 4.4146 47 1 6.7305 2.7839 3.9830 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671099842.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:46 Heat of formation + Delta-G solvation = -22.964301 kcal Electronic energy + Delta-G solvation = -27001.914002 eV Core-core repulsion = 23119.449802 eV Total energy + Delta-G solvation = -3882.464200 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.16621 -40.70826 -39.68650 -36.75413 -36.09185 -34.58405 -34.23197 -33.03609 -30.79367 -28.55962 -27.70751 -27.64823 -27.05816 -26.64220 -24.02327 -22.04008 -21.52271 -20.64033 -19.99003 -19.40645 -18.48998 -18.00969 -17.69233 -17.09556 -16.91190 -16.87374 -16.61588 -16.21546 -16.00985 -15.82739 -15.26775 -14.96179 -14.55412 -14.55023 -14.45958 -14.16793 -13.75126 -13.57108 -13.52223 -13.41226 -13.24935 -13.18525 -13.14811 -12.91830 -12.90624 -12.60559 -12.45293 -12.08903 -11.95760 -11.91747 -11.68442 -11.15484 -11.00608 -10.89656 -10.46945 -10.27384 -10.05569 -9.83023 -9.65031 -8.66748 -8.34679 -6.12675 1.16328 1.24939 1.41341 1.44988 1.53202 1.57421 1.64806 2.06848 2.24846 2.27381 2.96986 2.99368 3.25895 3.42800 3.64794 3.73443 3.81406 3.87375 3.94456 4.08882 4.15669 4.19869 4.27116 4.32799 4.38803 4.49557 4.55087 4.57364 4.68302 4.73617 4.77233 4.79722 4.84712 4.88833 4.99699 5.05018 5.09466 5.30360 5.37457 5.42330 5.59841 5.63804 5.77370 5.89686 6.20271 6.29525 6.57827 7.06680 7.12195 7.28320 8.74883 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026433 B = 0.001852 C = 0.001779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.013790 B =15112.620826 C =15735.994540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.716 5.716 5 C 0.516 3.484 6 O -0.567 6.567 7 C 0.028 3.972 8 H 0.103 0.897 9 C -0.139 4.139 10 N -0.459 5.459 11 C 0.003 3.997 12 C 0.103 3.897 13 N -0.585 5.585 14 C 0.087 3.913 15 C 0.535 3.465 16 O -0.561 6.561 17 C -0.124 4.124 18 S -0.146 6.146 19 C -0.547 4.547 20 H 0.081 0.919 21 C 0.015 3.985 22 N -0.910 5.910 23 Si 0.999 3.001 24 H -0.259 1.259 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.002 3.998 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.132 0.868 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.415 0.585 34 H 0.052 0.948 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.272 0.728 46 H 0.083 0.917 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.988 -27.369 -4.158 36.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.024 3.976 4 N -0.370 5.370 5 C 0.302 3.698 6 O -0.444 6.444 7 C -0.084 4.084 8 H 0.120 0.880 9 C -0.196 4.196 10 N -0.182 5.182 11 C -0.126 4.126 12 C -0.002 4.002 13 N -0.317 5.317 14 C -0.055 4.055 15 C 0.323 3.677 16 O -0.440 6.440 17 C -0.275 4.275 18 S 0.081 5.919 19 C -0.695 4.695 20 H 0.099 0.901 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.182 1.182 25 H -0.198 1.198 26 H -0.198 1.198 27 C -0.127 4.127 28 H 0.115 0.885 29 H 0.138 0.862 30 H 0.149 0.851 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.253 0.747 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.095 0.905 39 H 0.121 0.879 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.944 -26.915 -4.198 35.616 hybrid contribution -0.557 0.808 -0.310 1.030 sum -23.502 -26.107 -4.508 35.415 Atomic orbital electron populations 1.24173 0.95789 1.03147 0.96875 1.22944 0.96279 0.97402 1.03140 1.20354 0.91535 0.96464 0.89293 1.45889 1.40418 1.19818 1.30900 1.20828 0.81159 0.81942 0.85830 1.90711 1.68877 1.36688 1.48139 1.22348 0.96811 0.94154 0.95044 0.87980 1.21809 1.00532 1.03271 0.94032 1.68982 1.14492 1.30047 1.04701 1.24233 0.89860 1.00981 0.97575 1.22142 1.00137 0.79838 0.98098 1.47369 1.13224 1.05515 1.65635 1.21880 0.84497 0.98522 1.00635 1.20085 0.82873 0.88495 0.76204 1.90659 1.30833 1.75031 1.47463 1.23372 1.03786 0.94454 1.05874 1.85481 1.15054 1.03876 1.87469 1.23234 1.02666 0.91460 1.52142 0.90126 1.26110 0.94087 1.04985 0.93805 1.70186 1.05237 1.36018 1.43227 0.84908 0.78885 0.75926 0.78240 1.18222 1.19767 1.19829 1.24288 0.91020 1.01993 0.95405 0.88535 0.86210 0.85051 0.92525 0.91962 0.74745 0.92929 0.89092 0.90194 0.87911 0.90452 0.87905 0.91975 0.91370 0.88966 0.87763 0.87720 0.91947 0.89806 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.88 14.32 67.78 0.97 0.09 16 2 C -0.18 -1.10 9.63 25.64 0.25 -0.86 16 3 C 0.15 1.69 6.11 85.63 0.52 2.22 16 4 N -0.72 -7.42 5.44 -466.79 -2.54 -9.96 16 5 C 0.52 8.78 7.10 87.66 0.62 9.41 16 6 O -0.57 -15.34 16.23 -3.04 -0.05 -15.39 16 7 C 0.03 0.35 2.14 44.17 0.09 0.44 16 8 H 0.10 0.74 7.52 -2.39 -0.02 0.73 16 9 C -0.14 -1.17 8.99 71.98 0.65 -0.53 16 10 N -0.46 -8.32 4.26 -906.35 -3.86 -12.18 16 11 C 0.00 0.06 6.38 83.62 0.53 0.59 16 12 C 0.10 2.48 4.66 45.46 0.21 2.70 16 13 N -0.59 -17.58 3.11 -821.53 -2.56 -20.13 16 14 C 0.09 2.22 9.33 127.77 1.19 3.41 16 15 C 0.54 21.39 7.69 87.66 0.67 22.06 16 16 O -0.56 -26.75 15.38 -3.02 -0.05 -26.80 16 17 C -0.12 -5.29 4.71 71.24 0.34 -4.96 16 18 S -0.15 -8.35 20.57 -56.49 -1.16 -9.52 16 19 C -0.55 -32.11 9.50 67.95 0.65 -31.46 16 20 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 21 C 0.01 0.87 5.49 84.86 0.47 1.33 16 22 N -0.91 -56.62 13.22 21.65 0.29 -56.33 16 23 Si 1.00 44.54 29.55 68.60 2.03 46.56 16 24 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 C 0.00 0.04 6.08 83.63 0.51 0.55 16 28 H 0.10 0.60 7.84 -2.91 -0.02 0.58 16 29 H 0.12 0.28 8.06 -2.91 -0.02 0.26 16 30 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 31 H 0.06 0.83 7.79 -2.39 -0.02 0.81 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.42 1.56 7.89 -92.71 -0.73 0.83 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 0.28 7.57 -2.39 -0.02 0.27 16 36 H 0.08 0.58 7.03 -2.39 -0.02 0.56 16 37 H 0.10 1.44 7.54 -2.39 -0.02 1.42 16 38 H 0.08 1.82 7.25 -2.39 -0.02 1.80 16 39 H 0.10 2.76 7.29 -2.39 -0.02 2.75 16 40 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.07 1.73 6.44 -2.39 -0.02 1.71 16 42 H 0.09 2.33 5.68 -2.39 -0.01 2.31 16 43 H 0.10 4.13 7.40 -2.39 -0.02 4.11 16 44 H 0.10 4.13 8.11 -2.39 -0.02 4.11 16 45 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.11 1.24 7.66 -2.38 -0.02 1.22 16 Total: -1.00 -83.27 399.06 0.01 -83.26 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 0.24 Total: 15.49 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 7.67 Total: 5.00 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -8.68 Total: -98.61 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -0.10 Total: -42.19 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.52 kcal Total: -83.27 0.01 -83.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671099842.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.299 kcal (2) G-P(sol) polarization free energy of solvation -83.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds