Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47787 * 2 1 4 4 N 1.46501 * 109.47376 * 120.00660 * 2 1 3 5 5 C 1.36935 * 119.99973 * 274.72136 * 4 2 1 6 6 H 1.08004 * 119.99628 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00130 * 179.97438 * 5 4 2 8 8 N 1.31627 * 120.00270 * 180.02562 * 7 5 4 9 9 Si 1.86797 * 120.00092 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47259 * 90.00099 * 9 7 5 11 11 H 1.48509 * 109.47155 * 210.00085 * 9 7 5 12 12 H 1.48496 * 109.47190 * 329.99928 * 9 7 5 13 13 C 1.53009 * 109.46845 * 240.00454 * 2 1 3 14 14 H 1.08999 * 110.88402 * 299.29732 * 13 2 1 15 15 C 1.55149 * 111.00306 * 63.18048 * 13 2 1 16 16 C 1.54324 * 102.94097 * 153.57750 * 15 13 2 17 17 N 1.47018 * 107.27300 * 337.80482 * 16 15 13 18 18 C 1.34772 * 125.64953 * 178.97435 * 17 16 15 19 19 O 1.21553 * 120.00059 * 175.01078 * 18 17 16 20 20 C 1.47846 * 120.00339 * 355.01627 * 18 17 16 21 21 C 1.40596 * 120.28290 * 187.81189 * 20 18 17 22 22 N 1.30819 * 121.52091 * 179.97438 * 21 20 18 23 23 C 1.33753 * 121.79789 * 0.02562 * 22 21 20 24 24 N 1.33889 * 120.62296 * 180.02562 * 23 22 21 25 25 C 1.31333 * 119.85005 * 179.97438 * 24 23 22 26 26 C 1.39759 * 120.77347 * 0.02562 * 25 24 23 27 27 N 1.31307 * 120.55608 * 359.95598 * 26 25 24 28 28 C 1.33665 * 119.70285 * 0.03638 * 27 26 25 29 29 C 1.38908 * 120.27553 * 7.54046 * 20 18 17 30 30 C 1.47468 * 108.72255 * 358.97577 * 17 16 15 31 31 H 1.08997 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46460 * 299.99470 * 1 2 3 33 33 H 1.08993 * 109.47002 * 59.99361 * 1 2 3 34 34 H 0.97003 * 120.00080 * 95.00020 * 4 2 1 35 35 H 0.96994 * 120.00080 * 180.02562 * 8 7 5 36 36 H 1.09009 * 110.72220 * 271.93773 * 15 13 2 37 37 H 1.09003 * 110.72368 * 35.03600 * 15 13 2 38 38 H 1.08997 * 109.88513 * 97.22412 * 16 15 13 39 39 H 1.09008 * 109.88127 * 218.23123 * 16 15 13 40 40 H 1.07999 * 119.23997 * 359.97438 * 21 20 18 41 41 H 1.08003 * 119.60923 * 179.97438 * 25 24 23 42 42 H 1.07998 * 119.71959 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.99569 * 359.97438 * 29 20 18 44 44 H 1.09001 * 110.34892 * 265.25500 * 30 17 16 45 45 H 1.08999 * 110.40557 * 142.91384 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1546 -0.0064 2.3743 6 1 1.9024 1.0427 2.4216 7 6 2.6169 -0.6609 3.5077 8 7 2.7473 -0.0032 4.6404 9 14 3.0524 -2.4756 3.4260 10 1 4.4836 -2.6251 3.0591 11 1 2.8129 -3.1023 4.7508 12 1 2.2070 -3.1420 2.4031 13 6 2.0400 -0.7212 -1.2494 14 1 1.6996 -1.7566 -1.2665 15 6 1.6092 0.0273 -2.5383 16 6 2.7008 -0.3745 -3.5525 17 7 3.8814 -0.7902 -2.7813 18 6 5.0432 -1.2331 -3.3012 19 8 5.9868 -1.4647 -2.5708 20 6 5.1702 -1.4370 -4.7600 21 6 6.3173 -2.0511 -5.2929 22 7 6.4547 -2.2440 -6.5794 23 6 5.5142 -1.8677 -7.4529 24 7 5.6791 -2.0770 -8.7650 25 6 4.7457 -1.7019 -9.6092 26 6 3.5773 -1.0837 -9.1551 27 7 3.3914 -0.8674 -7.8734 28 6 4.3280 -1.2410 -6.9960 29 6 4.1548 -1.0284 -5.6153 30 6 3.5842 -0.6427 -1.3444 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 2.2491 -1.6319 1.1524 35 1 3.0707 -0.4605 5.4323 36 1 0.6287 -0.3125 -2.8722 37 1 1.6075 1.1052 -2.3761 38 1 2.3489 -1.2030 -4.1671 39 1 2.9498 0.4771 -4.1858 40 1 7.1030 -2.3710 -4.6246 41 1 4.8829 -1.8723 -10.6668 42 1 2.8210 -0.7818 -9.8644 43 1 3.2608 -0.5584 -5.2327 44 1 3.9380 0.3222 -0.9813 45 1 4.0409 -1.4534 -0.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672210930.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = 68.425106 kcal Electronic energy + Delta-G solvation = -28881.968044 eV Core-core repulsion = 24900.315586 eV Total energy + Delta-G solvation = -3981.652458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.90563 -41.47586 -39.61824 -38.81658 -37.11458 -36.19456 -34.49690 -33.45617 -32.40795 -32.12232 -30.48326 -29.72638 -27.37104 -26.39667 -25.70666 -24.72646 -24.10988 -22.74590 -21.75564 -21.30923 -20.54214 -19.59250 -19.22634 -18.44265 -17.94425 -17.33470 -16.90481 -16.67470 -16.53834 -16.32916 -15.92142 -15.72024 -15.41247 -15.04020 -14.76388 -14.62268 -14.33765 -14.22095 -13.89645 -13.82505 -13.72919 -13.60756 -13.26732 -13.04175 -12.93479 -12.87624 -12.47434 -12.38379 -12.10705 -12.01741 -11.88213 -11.73264 -11.68223 -11.38443 -11.26320 -10.97639 -10.62137 -10.36920 -9.90487 -9.84147 -9.28627 -8.00519 -5.31822 -1.28733 -0.94025 0.51782 1.16394 1.35893 1.40053 1.45372 1.63414 1.93952 2.37318 2.48633 2.70838 2.81110 2.85906 3.20091 3.32154 3.35530 3.43109 3.56967 3.62059 3.75496 3.80731 3.93883 4.01826 4.15695 4.18402 4.29057 4.34385 4.44416 4.53025 4.59265 4.62842 4.78285 4.82572 4.83874 4.93523 5.03170 5.09951 5.17968 5.24559 5.29107 5.41452 5.64699 5.79308 5.81680 6.23446 6.24864 6.31066 6.72549 6.82267 7.11318 7.89203 8.04923 9.21244 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.002479 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.023194 B =11292.990980 C =12303.006060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.182 3.818 3 H 0.049 0.951 4 N -0.754 5.754 5 C -0.216 4.216 6 H 0.061 0.939 7 C -0.066 4.066 8 N -0.985 5.985 9 Si 0.945 3.055 10 H -0.288 1.288 11 H -0.299 1.299 12 H -0.250 1.250 13 C -0.097 4.097 14 H 0.089 0.911 15 C -0.113 4.113 16 C 0.077 3.923 17 N -0.606 5.606 18 C 0.573 3.427 19 O -0.571 6.571 20 C -0.176 4.176 21 C 0.206 3.794 22 N -0.486 5.486 23 C 0.247 3.753 24 N -0.463 5.463 25 C 0.132 3.868 26 C 0.093 3.907 27 N -0.421 5.421 28 C 0.005 3.995 29 C -0.009 4.009 30 C 0.117 3.883 31 H 0.050 0.950 32 H 0.028 0.972 33 H 0.085 0.915 34 H 0.362 0.638 35 H 0.255 0.745 36 H 0.120 0.880 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.184 0.816 41 H 0.233 0.767 42 H 0.237 0.763 43 H 0.211 0.789 44 H 0.062 0.938 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.659 -1.644 -35.868 36.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.397 5.397 5 C -0.347 4.347 6 H 0.079 0.921 7 C -0.257 4.257 8 N -0.637 5.637 9 Si 0.774 3.226 10 H -0.215 1.215 11 H -0.226 1.226 12 H -0.174 1.174 13 C -0.117 4.117 14 H 0.108 0.892 15 C -0.151 4.151 16 C -0.044 4.044 17 N -0.337 5.337 18 C 0.362 3.638 19 O -0.451 6.451 20 C -0.183 4.183 21 C 0.029 3.971 22 N -0.195 5.195 23 C 0.008 3.992 24 N -0.179 5.179 25 C -0.048 4.048 26 C -0.085 4.085 27 N -0.136 5.136 28 C -0.120 4.120 29 C -0.035 4.035 30 C -0.005 4.005 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.103 0.897 34 H 0.195 0.805 35 H 0.064 0.936 36 H 0.138 0.862 37 H 0.111 0.889 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.201 0.799 41 H 0.249 0.751 42 H 0.253 0.747 43 H 0.227 0.773 44 H 0.080 0.920 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.286 -2.028 -35.538 35.747 hybrid contribution 0.306 -0.734 1.484 1.684 sum -2.981 -2.762 -34.053 34.295 Atomic orbital electron populations 1.22266 0.96452 1.01467 1.01278 1.20408 0.93418 0.94956 0.83775 0.93318 1.42872 1.80052 1.09401 1.07366 1.19006 1.34098 0.94264 0.87311 0.92138 1.25405 1.02937 1.01871 0.95489 1.69867 1.55171 1.37410 1.01218 0.85548 0.78248 0.81864 0.76950 1.21493 1.22576 1.17406 1.22576 0.92128 1.01294 0.95707 0.89245 1.22785 0.99081 1.01867 0.91322 1.22948 0.84804 1.01162 0.95491 1.48490 1.13499 1.63085 1.08646 1.17801 0.81675 0.77268 0.87045 1.90820 1.38781 1.53612 1.61912 1.20860 0.98038 1.05830 0.93577 1.23338 0.95086 0.88515 0.90130 1.67569 1.29603 1.19448 1.02905 1.20445 0.90710 0.95481 0.92558 1.68392 1.31554 1.17021 1.00892 1.25324 0.88074 0.88658 1.02697 1.25203 0.98345 0.92421 0.92534 1.68692 1.26914 1.13925 1.04050 1.20252 0.93799 1.01919 0.95995 1.23582 0.99341 0.90751 0.89802 1.22211 0.96894 1.01301 0.80107 0.93122 0.95241 0.89652 0.80529 0.93621 0.86195 0.88861 0.88096 0.87829 0.79892 0.75069 0.74679 0.77273 0.91953 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 9.31 71.98 0.67 -3.66 16 2 C 0.18 5.85 2.40 44.99 0.11 5.96 16 3 H 0.05 1.68 8.07 -2.39 -0.02 1.66 16 4 N -0.75 -33.03 4.70 -322.93 -1.52 -34.55 16 5 C -0.22 -11.93 10.41 84.03 0.87 -11.05 16 6 H 0.06 3.66 8.06 -2.91 -0.02 3.63 16 7 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 8 N -0.99 -63.65 13.97 21.65 0.30 -63.34 16 9 Si 0.95 46.46 27.73 68.60 1.90 48.37 16 10 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 11 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 12 H -0.25 -10.94 6.52 99.48 0.65 -10.29 16 13 C -0.10 -2.32 2.64 -9.40 -0.02 -2.34 16 14 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 15 C -0.11 -1.53 5.44 31.78 0.17 -1.36 16 16 C 0.08 1.02 4.87 86.73 0.42 1.45 16 17 N -0.61 -14.35 3.33 -820.25 -2.73 -17.08 16 18 C 0.57 15.87 7.81 86.79 0.68 16.55 16 19 O -0.57 -20.83 16.67 -3.88 -0.06 -20.89 16 20 C -0.18 -3.94 5.88 -20.00 -0.12 -4.06 16 21 C 0.21 4.98 10.73 85.42 0.92 5.89 16 22 N -0.49 -12.72 10.39 -192.76 -2.00 -14.73 16 23 C 0.25 5.64 7.60 134.96 1.03 6.67 16 24 N -0.46 -8.80 10.55 -193.11 -2.04 -10.84 16 25 C 0.13 0.92 11.21 85.14 0.95 1.87 16 26 C 0.09 0.46 11.22 85.14 0.96 1.42 16 27 N -0.42 -5.46 10.46 -187.99 -1.97 -7.42 16 28 C 0.00 0.09 6.59 40.34 0.27 0.35 16 29 C -0.01 -0.15 8.67 23.05 0.20 0.05 16 30 C 0.12 3.43 6.15 86.85 0.53 3.97 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.08 1.65 7.38 -2.39 -0.02 1.63 16 34 H 0.36 15.65 5.66 -92.71 -0.53 15.13 16 35 H 0.25 15.84 8.31 -92.71 -0.77 15.07 16 36 H 0.12 0.96 8.12 -2.38 -0.02 0.94 16 37 H 0.09 1.19 8.04 -2.39 -0.02 1.17 16 38 H 0.10 0.95 6.67 -2.39 -0.02 0.94 16 39 H 0.10 0.96 6.80 -2.38 -0.02 0.94 16 40 H 0.18 4.22 7.65 -2.91 -0.02 4.20 16 41 H 0.23 -0.86 8.06 -2.91 -0.02 -0.88 16 42 H 0.24 -1.42 8.06 -2.91 -0.02 -1.44 16 43 H 0.21 2.41 2.88 -4.91 -0.01 2.40 16 44 H 0.06 2.03 8.03 -2.39 -0.02 2.01 16 45 H 0.05 1.86 8.09 -2.39 -0.02 1.84 16 Total: -1.00 -87.14 369.26 0.45 -86.70 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: 0.46 Total: 15.49 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 8.10 Total: 18.29 kcal Atomic # 7 Polarization: -138.00 SS G_CDS: -9.95 Total: -147.95 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.89 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.90 Total: 48.37 kcal Total: -87.14 0.45 -86.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672210930.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.123 kcal (2) G-P(sol) polarization free energy of solvation -87.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds