Wall clock time and date at job start Sat Apr 11 2020 06:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47294 * 2 1 4 4 C 1.50698 * 109.47108 * 119.99940 * 2 1 3 5 5 N 1.34777 * 120.00263 * 300.00282 * 4 2 1 6 6 O 1.21280 * 120.00357 * 119.99697 * 4 2 1 7 7 N 1.46897 * 109.47181 * 239.99937 * 2 1 3 8 8 C 1.46520 * 111.00054 * 48.88500 * 7 2 1 9 9 C 1.53406 * 109.27160 * 186.71961 * 8 7 2 10 10 C 1.52983 * 109.23424 * 297.03834 * 9 8 7 11 11 H 1.08999 * 111.21057 * 286.66511 * 10 9 8 12 12 C 1.54694 * 107.55370 * 164.48166 * 10 9 8 13 13 N 1.46916 * 107.33063 * 262.32106 * 12 10 9 14 14 C 1.34783 * 125.40113 * 178.36842 * 13 12 10 15 15 O 1.21276 * 119.99935 * 180.02562 * 14 13 12 16 16 C 1.50703 * 119.99813 * 0.02562 * 14 13 12 17 17 S 1.80996 * 109.47009 * 179.97438 * 16 14 13 18 18 C 1.76198 * 99.99989 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00290 * 0.02562 * 18 17 16 20 20 C 1.38803 * 120.00081 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00102 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99795 * 0.02562 * 20 18 17 23 23 H 1.48510 * 109.47168 * 90.00180 * 22 20 18 24 24 H 1.48501 * 109.47127 * 209.99640 * 22 20 18 25 25 H 1.48498 * 109.47513 * 330.00000 * 22 20 18 26 26 C 1.47192 * 109.19947 * 358.63507 * 13 12 10 27 27 C 1.53072 * 111.73891 * 51.69718 * 10 9 8 28 28 H 1.09000 * 108.24530 * 198.27475 * 27 10 9 29 29 C 1.45296 * 111.00238 * 174.99855 * 7 2 1 30 30 H 1.08999 * 109.46862 * 59.99658 * 1 2 3 31 31 H 1.08997 * 109.47294 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46941 * 300.00084 * 1 2 3 33 33 H 0.97004 * 119.99973 * 359.97438 * 5 4 2 34 34 H 0.96999 * 120.00496 * 179.97438 * 5 4 2 35 35 H 1.09002 * 109.61703 * 306.72959 * 8 7 2 36 36 H 1.09003 * 109.61999 * 67.08944 * 8 7 2 37 37 H 1.08998 * 110.24364 * 176.71756 * 9 8 7 38 38 H 1.09003 * 108.94932 * 56.57121 * 9 8 7 39 39 H 1.09004 * 109.87551 * 142.88611 * 12 10 9 40 40 H 1.08998 * 109.87240 * 21.75779 * 12 10 9 41 41 H 1.08993 * 109.47043 * 300.00140 * 16 14 13 42 42 H 1.09004 * 109.47109 * 60.00141 * 16 14 13 43 43 H 0.97001 * 119.99756 * 180.02562 * 21 20 18 44 44 H 1.09004 * 110.21914 * 100.44467 * 26 13 12 45 45 H 1.09003 * 110.22335 * 222.38049 * 26 13 12 46 46 H 1.09002 * 108.29092 * 64.30295 * 29 7 2 47 47 H 1.08998 * 108.14875 * 307.28120 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7067 -0.2500 2.4546 6 8 2.7295 -1.6965 1.1193 7 7 2.0197 -0.6925 -1.1994 8 6 1.3467 -0.1975 -2.4031 9 6 1.7608 -1.0569 -3.6044 10 6 3.2663 -0.9103 -3.8338 11 1 3.5071 0.0629 -4.2616 12 6 3.7103 -2.0615 -4.7669 13 7 4.2592 -3.1268 -3.9170 14 6 4.7246 -4.3134 -4.3552 15 8 5.1573 -5.1245 -3.5642 16 6 4.7074 -4.6321 -5.8280 17 16 5.3929 -6.2857 -6.0955 18 6 5.2562 -6.3937 -7.8488 19 1 4.8422 -5.5691 -8.4100 20 6 5.6815 -7.5382 -8.5090 21 7 5.5789 -7.6191 -9.8187 22 14 6.3983 -8.9643 -7.5384 23 1 5.3087 -9.8947 -7.1479 24 1 7.3884 -9.6861 -8.3774 25 1 7.0676 -8.4460 -6.3183 26 6 4.2143 -2.6953 -2.5105 27 6 4.0627 -1.1665 -2.5519 28 1 5.0584 -0.7414 -2.6781 29 6 3.4672 -0.6103 -1.2936 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.1493 0.5389 2.5436 34 1 2.0297 -0.7074 3.2466 35 1 0.2666 -0.2561 -2.2687 36 1 1.6371 0.8372 -2.5855 37 1 1.2245 -0.7389 -4.4984 38 1 1.5257 -2.0997 -3.3914 39 1 4.4762 -1.7056 -5.4559 40 1 2.8529 -2.4376 -5.3251 41 1 3.6815 -4.5999 -6.1947 42 1 5.3086 -3.8987 -6.3655 43 1 5.8758 -8.4191 -10.2799 44 1 3.3595 -3.1452 -2.0054 45 1 5.1394 -2.9685 -2.0028 46 1 3.8961 -1.1457 -0.4465 47 1 3.7537 0.4383 -1.2138 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689212245.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:06 Heat of formation + Delta-G solvation = -91.381112 kcal Electronic energy + Delta-G solvation = -27962.647310 eV Core-core repulsion = 24077.216335 eV Total energy + Delta-G solvation = -3885.430975 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84093 -40.79459 -39.55929 -37.51007 -34.97028 -34.68771 -34.02496 -33.07463 -31.51635 -30.40428 -28.89669 -27.87407 -25.94070 -25.59885 -23.44205 -23.06134 -20.99979 -20.83100 -19.92979 -19.50657 -18.51396 -18.11219 -17.87389 -17.34601 -17.15100 -16.78910 -16.39137 -16.03558 -15.80154 -15.73131 -15.58121 -15.14826 -14.93187 -14.62204 -14.44026 -14.36069 -14.06262 -13.71855 -13.53777 -13.35998 -13.32134 -13.13817 -13.03420 -12.89590 -12.70730 -12.51327 -12.39468 -12.17716 -11.88140 -11.81680 -11.42636 -11.18943 -11.16940 -11.00483 -10.65540 -10.56365 -10.54424 -9.73413 -9.08036 -9.03334 -8.52897 -6.24311 0.93715 1.29873 1.43990 1.48123 1.51901 1.70107 2.04603 2.24092 2.45120 2.66764 2.85043 2.96213 3.33473 3.47532 3.69019 3.76552 3.95976 4.03601 4.09347 4.14377 4.20416 4.28755 4.34973 4.37441 4.43194 4.53924 4.59187 4.62813 4.68509 4.74388 4.81560 4.85905 4.94014 5.02467 5.06054 5.10895 5.19722 5.31122 5.35217 5.46837 5.69846 5.94172 6.09360 6.09851 6.28675 6.34991 6.57112 6.92212 7.02717 7.44227 8.59356 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024588 B = 0.002265 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.491520 B =12358.756394 C =12977.497955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 H 0.092 0.908 4 C 0.510 3.490 5 N -0.839 5.839 6 O -0.577 6.577 7 N -0.547 5.547 8 C 0.059 3.941 9 C -0.112 4.112 10 C -0.079 4.079 11 H 0.124 0.876 12 C 0.092 3.908 13 N -0.612 5.612 14 C 0.543 3.457 15 O -0.569 6.569 16 C -0.098 4.098 17 S -0.179 6.179 18 C -0.526 4.526 19 H 0.064 0.936 20 C 0.047 3.953 21 N -0.914 5.914 22 Si 0.912 3.088 23 H -0.263 1.263 24 H -0.256 1.256 25 H -0.240 1.240 26 C 0.122 3.878 27 C -0.078 4.078 28 H 0.088 0.912 29 C 0.077 3.923 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.417 0.583 34 H 0.405 0.595 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.278 0.722 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.071 0.929 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 28.546 22.069 38.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 H 0.110 0.890 4 C 0.295 3.705 5 N -0.404 5.404 6 O -0.456 6.456 7 N -0.273 5.273 8 C -0.068 4.068 9 C -0.149 4.149 10 C -0.097 4.097 11 H 0.142 0.858 12 C -0.030 4.030 13 N -0.346 5.346 14 C 0.331 3.669 15 O -0.448 6.448 16 C -0.248 4.248 17 S 0.047 5.953 18 C -0.674 4.674 19 H 0.083 0.917 20 C -0.158 4.158 21 N -0.552 5.552 22 Si 0.735 3.265 23 H -0.187 1.187 24 H -0.180 1.180 25 H -0.164 1.164 26 C -0.001 4.001 27 C -0.098 4.098 28 H 0.106 0.894 29 C -0.051 4.051 30 H 0.108 0.892 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.249 0.751 34 H 0.236 0.764 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.116 0.884 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.089 0.911 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.825 26.130 22.808 36.979 hybrid contribution 0.166 0.566 -0.661 0.886 sum -12.659 26.695 22.146 36.923 Atomic orbital electron populations 1.21957 0.90155 1.03104 1.04941 1.21600 0.98305 0.96307 0.87817 0.89038 1.21055 0.79092 0.83923 0.86413 1.43737 1.55502 1.33997 1.07124 1.90750 1.39456 1.28151 1.87217 1.60278 1.05518 1.58945 1.02591 1.22196 0.99844 0.96905 0.87829 1.21778 0.94060 1.00379 0.98725 1.21945 0.96008 0.98613 0.93161 0.85762 1.22599 0.99273 0.87178 0.93916 1.48316 1.61688 1.15314 1.09303 1.19769 0.76860 0.80665 0.89640 1.90681 1.47992 1.48323 1.57770 1.23172 1.06030 1.00321 0.95325 1.84787 1.82636 1.19730 1.08124 1.22410 1.48168 1.06312 0.90498 0.91740 1.25522 0.94591 1.00269 0.95448 1.70004 1.46652 1.30146 1.08383 0.85896 0.80118 0.80087 0.80445 1.18737 1.18011 1.16418 1.21922 1.00578 0.95864 0.81715 1.21015 1.00766 0.92602 0.95403 0.89399 1.20852 0.87735 0.99251 0.97255 0.89229 0.92992 0.88971 0.75125 0.76381 0.88457 0.92704 0.88423 0.93514 0.90047 0.90193 0.87156 0.86945 0.91296 0.92854 0.93094 0.91092 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 8.47 71.98 0.61 -0.11 16 2 C 0.07 0.70 2.52 44.17 0.11 0.81 16 3 H 0.09 0.47 8.01 -2.39 -0.02 0.45 16 4 C 0.51 7.81 7.17 87.66 0.63 8.44 16 5 N -0.84 -5.26 8.77 -173.54 -1.52 -6.78 16 6 O -0.58 -15.73 15.02 -3.03 -0.05 -15.77 16 7 N -0.55 -8.34 4.27 -885.93 -3.78 -12.12 16 8 C 0.06 0.59 4.99 86.51 0.43 1.02 16 9 C -0.11 -1.47 5.10 30.72 0.16 -1.32 16 10 C -0.08 -1.13 3.31 -10.20 -0.03 -1.17 16 11 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 12 C 0.09 1.92 5.92 86.88 0.51 2.43 16 13 N -0.61 -18.89 3.33 -814.31 -2.71 -21.60 16 14 C 0.54 22.10 7.86 87.66 0.69 22.79 16 15 O -0.57 -28.28 16.16 -3.02 -0.05 -28.33 16 16 C -0.10 -4.07 5.33 71.24 0.38 -3.69 16 17 S -0.18 -9.64 18.55 -56.49 -1.05 -10.68 16 18 C -0.53 -31.55 10.04 67.96 0.68 -30.87 16 19 H 0.06 4.04 8.03 -2.91 -0.02 4.02 16 20 C 0.05 2.84 5.50 84.86 0.47 3.31 16 21 N -0.91 -56.43 13.97 21.65 0.30 -56.12 16 22 Si 0.91 46.46 27.74 68.60 1.90 48.36 16 23 H -0.26 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.24 -12.36 6.74 99.48 0.67 -11.69 16 26 C 0.12 3.53 6.19 86.48 0.54 4.07 16 27 C -0.08 -1.48 2.75 -11.53 -0.03 -1.51 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 C 0.08 1.35 4.52 85.61 0.39 1.74 16 30 H 0.09 0.20 6.17 -2.39 -0.01 0.19 16 31 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 -0.04 7.56 -2.39 -0.02 -0.05 16 33 H 0.42 -0.57 8.25 -92.71 -0.76 -1.33 16 34 H 0.41 2.49 8.93 -92.71 -0.83 1.67 16 35 H 0.10 0.73 5.77 -2.39 -0.01 0.72 16 36 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.05 0.93 8.00 -2.39 -0.02 0.91 16 39 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.08 1.59 7.69 -2.39 -0.02 1.58 16 41 H 0.11 4.25 8.14 -2.40 -0.02 4.23 16 42 H 0.11 4.29 8.14 -2.39 -0.02 4.27 16 43 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 44 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 45 H 0.05 1.68 8.12 -2.39 -0.02 1.66 16 46 H 0.07 1.72 5.59 -2.39 -0.01 1.71 16 47 H 0.04 0.59 7.97 -2.39 -0.02 0.57 16 Total: -1.00 -87.36 380.03 -2.05 -89.41 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -0.63 Total: 7.70 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 5.53 Total: 5.94 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -7.71 Total: -96.63 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -0.09 Total: -44.10 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.90 Total: 48.36 kcal Atomic # 16 Polarization: -9.64 SS G_CDS: -1.05 Total: -10.68 kcal Total: -87.36 -2.05 -89.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689212245.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.967 kcal (2) G-P(sol) polarization free energy of solvation -87.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds