Wall clock time and date at job start Sat Apr 11 2020 06:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47148 * 2 1 4 4 C 1.46760 * 124.34755 * 89.99359 * 3 2 1 5 5 C 1.54489 * 105.47088 * 162.98456 * 4 3 2 6 6 C 1.54631 * 101.76162 * 25.42230 * 5 4 3 7 7 H 1.08994 * 110.49002 * 94.00790 * 6 5 4 8 8 N 1.46903 * 110.48122 * 216.52359 * 6 5 4 9 9 C 1.47962 * 110.99802 * 179.97438 * 8 6 5 10 10 C 1.53936 * 86.18211 * 222.41618 * 9 8 6 11 11 C 1.52999 * 113.73650 * 138.07887 * 10 9 8 12 12 N 1.46497 * 109.46992 * 176.89986 * 11 10 9 13 13 C 1.34777 * 119.99525 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 11 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76196 * 100.00314 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00626 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00584 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46793 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99523 * 21 19 17 24 24 H 1.48500 * 109.47237 * 240.00020 * 21 19 17 25 25 C 1.48187 * 111.07361 * 80.56747 * 8 6 5 26 26 C 1.34417 * 124.34855 * 270.00017 * 3 2 1 27 27 O 1.21287 * 124.94390 * 0.44094 * 26 3 2 28 28 H 1.09000 * 109.47265 * 300.00057 * 1 2 3 29 29 H 1.08996 * 109.47162 * 60.00515 * 1 2 3 30 30 H 1.09007 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47265 * 239.99942 * 2 1 3 32 32 H 1.09004 * 109.46908 * 119.99624 * 2 1 3 33 33 H 1.09001 * 110.24867 * 43.99317 * 4 3 2 34 34 H 1.08993 * 110.25121 * 281.98465 * 4 3 2 35 35 H 1.08995 * 110.97082 * 267.30240 * 5 4 3 36 36 H 1.09006 * 110.96749 * 143.53468 * 5 4 3 37 37 H 1.09001 * 113.75901 * 108.09647 * 9 8 6 38 38 H 1.09006 * 113.75802 * 336.73090 * 9 8 6 39 39 H 1.08999 * 113.73192 * 269.26162 * 10 9 8 40 40 H 1.08995 * 109.46838 * 56.89874 * 11 10 9 41 41 H 1.09001 * 109.46617 * 296.90209 * 11 10 9 42 42 H 0.97000 * 120.00580 * 0.02562 * 12 11 10 43 43 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 44 44 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 45 45 H 0.97003 * 120.00297 * 179.97438 * 20 19 17 46 46 H 1.09007 * 113.75783 * 23.23347 * 25 8 6 47 47 H 1.08999 * 113.82249 * 251.81230 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2942 2.1619 1.2117 5 6 3.1744 3.3442 0.7487 6 6 2.7694 3.4754 -0.7378 7 1 1.9760 4.2138 -0.8533 8 7 3.9328 3.8401 -1.5573 9 6 3.5579 3.9682 -2.9829 10 6 4.8679 3.2195 -3.2883 11 6 4.7310 2.1606 -4.3841 12 7 6.0408 1.5608 -4.6499 13 6 6.1634 0.5967 -5.5836 14 8 5.1895 0.2259 -6.2041 15 6 7.5120 -0.0160 -5.8614 16 16 7.3510 -1.2646 -7.1619 17 6 9.0254 -1.8002 -7.2808 18 1 9.7797 -1.3596 -6.6457 19 6 9.3750 -2.7890 -8.1899 20 7 8.4554 -3.3271 -8.9629 21 14 11.1499 -3.3573 -8.3155 22 1 11.9815 -2.6016 -7.3445 23 1 11.2278 -4.8086 -8.0103 24 1 11.6517 -3.1132 -9.6916 25 6 4.7637 2.6514 -1.8618 26 6 2.2712 2.0963 -1.1098 27 8 2.1210 1.6945 -2.2443 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 2.8323 1.5532 1.9383 34 1 1.3637 2.5308 1.6429 35 1 4.2331 3.1034 0.8448 36 1 2.9306 4.2517 1.3010 37 1 3.5458 4.9969 -3.3431 38 1 2.6606 3.4112 -3.2528 39 1 5.7244 3.8770 -3.4374 40 1 4.3531 2.6264 -5.2942 41 1 4.0366 1.3868 -4.0567 42 1 6.8197 1.8570 -4.1534 43 1 8.2039 0.7608 -6.1872 44 1 7.8925 -0.4840 -4.9536 45 1 8.6996 -4.0180 -9.5986 46 1 4.2196 1.7086 -1.8032 47 1 5.7134 2.6296 -1.3275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692283167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:14 Heat of formation + Delta-G solvation = -25.916504 kcal Electronic energy + Delta-G solvation = -27400.337540 eV Core-core repulsion = 23517.745323 eV Total energy + Delta-G solvation = -3882.592217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.87467 -39.43590 -38.61873 -36.87112 -34.79407 -33.77331 -32.39262 -30.91618 -29.64127 -28.70314 -26.80963 -26.50261 -25.44338 -24.28031 -23.51930 -21.63230 -20.55003 -19.95066 -19.33107 -17.84527 -17.39100 -17.08298 -16.45755 -16.26576 -16.04202 -15.53573 -15.00016 -14.81103 -14.77261 -14.56809 -14.36784 -13.99633 -13.92928 -13.64382 -13.55528 -13.10519 -12.99935 -12.80935 -12.52655 -12.45440 -12.29783 -12.18241 -11.82845 -11.56353 -11.47655 -11.35525 -11.05017 -11.04577 -10.97996 -10.80238 -10.72664 -10.64382 -9.76559 -9.30653 -9.20828 -9.04283 -8.89888 -8.73070 -8.17553 -6.45269 -6.18147 -3.88086 2.12811 2.52573 3.10328 3.21227 3.23954 3.30772 3.36106 3.40542 3.76640 3.88732 3.99142 4.23842 4.27799 4.30699 4.48357 4.57117 4.61730 4.71594 4.85862 4.93853 5.00553 5.04532 5.10001 5.16821 5.24300 5.28558 5.29930 5.32796 5.36862 5.45046 5.47717 5.51777 5.67544 5.71882 5.74585 5.83549 5.91888 5.97526 6.10677 6.19372 6.20469 6.53442 6.68492 6.74911 7.63292 7.74328 7.83072 8.39021 8.73308 9.27084 10.89349 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017638 B = 0.002069 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.087927 B =13528.485496 C =14126.596114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.618 5.618 4 C 0.100 3.900 5 C -0.119 4.119 6 C 0.016 3.984 7 H 0.117 0.883 8 N -0.456 5.456 9 C 0.002 3.998 10 C -0.120 4.120 11 C 0.131 3.869 12 N -0.738 5.738 13 C 0.530 3.470 14 O -0.517 6.517 15 C -0.152 4.152 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.072 3.928 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.003 4.003 26 C 0.493 3.507 27 O -0.515 6.515 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.396 0.604 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.267 0.733 46 H 0.083 0.917 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.967 16.013 25.737 32.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.353 5.353 4 C -0.024 4.024 5 C -0.157 4.157 6 C -0.097 4.097 7 H 0.135 0.865 8 N -0.178 5.178 9 C -0.126 4.126 10 C -0.140 4.140 11 C 0.007 3.993 12 N -0.392 5.392 13 C 0.315 3.685 14 O -0.392 6.392 15 C -0.303 4.303 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.137 4.137 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.132 4.132 26 C 0.279 3.721 27 O -0.391 6.391 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.493 15.530 24.319 32.290 hybrid contribution 2.110 -0.507 0.729 2.289 sum -12.383 15.023 25.048 31.725 Atomic orbital electron populations 1.22142 0.95589 1.02603 1.02320 1.21408 0.94533 0.80882 1.03480 1.48426 1.65635 1.13903 1.07336 1.22151 0.99634 0.92998 0.87589 1.22604 1.01043 0.98484 0.93565 1.23042 0.96290 0.94370 0.96025 0.86497 1.68846 1.11682 1.29313 1.07935 1.24181 0.98512 1.01772 0.88155 1.23105 0.99410 0.97445 0.94006 1.21279 0.85631 0.95046 0.97382 1.45988 1.10716 1.40944 1.41562 1.20295 0.90840 0.78626 0.78696 1.90707 1.39829 1.60466 1.48162 1.23524 0.96400 1.04240 1.06134 1.85418 1.13275 1.42113 1.42673 1.22914 0.93901 1.25679 1.25708 0.90909 1.25001 0.98533 0.95419 0.94739 1.70036 1.33002 1.25703 1.21569 0.86114 0.82780 0.78480 0.78093 1.19635 1.20596 1.20583 1.24316 0.99224 0.93711 0.95900 1.21686 0.77012 0.88545 0.84887 1.90774 1.52605 1.75167 1.20560 0.92552 0.92181 0.91207 0.89711 0.90268 0.90107 0.90922 0.89309 0.88659 0.89107 0.88126 0.87819 0.91465 0.90794 0.77017 0.89268 0.89354 0.92276 0.89948 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.12 0.86 6.65 -4.04 -0.03 0.83 16 3 N -0.62 -4.70 2.93 -172.41 -0.51 -5.20 16 4 C 0.10 0.43 7.35 -3.12 -0.02 0.41 16 5 C -0.12 -0.55 6.78 -25.09 -0.17 -0.72 16 6 C 0.02 0.12 3.10 -67.72 -0.21 -0.09 16 7 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 8 N -0.46 -3.93 6.22 -230.09 -1.43 -5.37 16 9 C 0.00 0.02 7.22 -2.76 -0.02 0.00 16 10 C -0.12 -1.20 3.93 -89.71 -0.35 -1.55 16 11 C 0.13 1.79 5.51 -4.04 -0.02 1.76 16 12 N -0.74 -10.79 5.56 -60.30 -0.33 -11.12 16 13 C 0.53 10.58 7.85 -10.98 -0.09 10.49 16 14 O -0.52 -12.62 15.86 5.55 0.09 -12.53 16 15 C -0.15 -3.21 6.16 36.01 0.22 -2.98 16 16 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 17 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 18 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.63 13.22 55.49 0.73 -25.90 16 21 Si 0.92 21.74 29.55 -169.99 -5.02 16.71 16 22 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.00 -0.03 6.81 -2.66 -0.02 -0.05 16 26 C 0.49 4.90 5.53 -10.86 -0.06 4.84 16 27 O -0.52 -7.12 13.70 5.55 0.08 -7.05 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.09 0.46 7.84 -51.93 -0.41 0.05 16 36 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.10 1.14 5.68 -51.93 -0.30 0.85 16 39 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.20 7.60 -51.93 -0.39 0.81 16 42 H 0.40 4.52 8.47 -40.82 -0.35 4.17 16 43 H 0.09 1.73 8.14 -51.91 -0.42 1.30 16 44 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.08 0.97 5.00 -51.93 -0.26 0.71 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 393.69 15.07 5.93 5.93 Total: -1.00 -37.20 393.69 -10.44 -47.64 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.58 Total: 1.81 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -0.19 Total: -0.99 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -1.54 Total: -47.59 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: 0.16 Total: -19.58 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -37.20 -10.44 -47.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692283167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.726 kcal (2) G-P(sol) polarization free energy of solvation -37.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds