Wall clock time and date at job start Sat Apr 11 2020 06:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47148 * 2 1 4 4 C 1.46760 * 124.34755 * 89.99359 * 3 2 1 5 5 C 1.54489 * 105.47088 * 162.98456 * 4 3 2 6 6 C 1.54631 * 101.76162 * 25.42230 * 5 4 3 7 7 H 1.08994 * 110.49002 * 94.00790 * 6 5 4 8 8 N 1.46903 * 110.48122 * 216.52359 * 6 5 4 9 9 C 1.47962 * 110.99802 * 179.97438 * 8 6 5 10 10 C 1.53936 * 86.18211 * 222.41618 * 9 8 6 11 11 C 1.52999 * 113.73650 * 138.07887 * 10 9 8 12 12 N 1.46497 * 109.46992 * 176.89986 * 11 10 9 13 13 C 1.34777 * 119.99525 * 179.97438 * 12 11 10 14 14 O 1.21283 * 120.00463 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72583 * 13 12 11 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76196 * 100.00314 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00626 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00584 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46793 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99523 * 21 19 17 24 24 H 1.48500 * 109.47237 * 240.00020 * 21 19 17 25 25 C 1.48187 * 111.07361 * 80.56747 * 8 6 5 26 26 C 1.34417 * 124.34855 * 270.00017 * 3 2 1 27 27 O 1.21287 * 124.94390 * 0.44094 * 26 3 2 28 28 H 1.09000 * 109.47265 * 300.00057 * 1 2 3 29 29 H 1.08996 * 109.47162 * 60.00515 * 1 2 3 30 30 H 1.09007 * 109.47033 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47265 * 239.99942 * 2 1 3 32 32 H 1.09004 * 109.46908 * 119.99624 * 2 1 3 33 33 H 1.09001 * 110.24867 * 43.99317 * 4 3 2 34 34 H 1.08993 * 110.25121 * 281.98465 * 4 3 2 35 35 H 1.08995 * 110.97082 * 267.30240 * 5 4 3 36 36 H 1.09006 * 110.96749 * 143.53468 * 5 4 3 37 37 H 1.09001 * 113.75901 * 108.09647 * 9 8 6 38 38 H 1.09006 * 113.75802 * 336.73090 * 9 8 6 39 39 H 1.08999 * 113.73192 * 269.26162 * 10 9 8 40 40 H 1.08995 * 109.46838 * 56.89874 * 11 10 9 41 41 H 1.09001 * 109.46617 * 296.90209 * 11 10 9 42 42 H 0.97000 * 120.00580 * 0.02562 * 12 11 10 43 43 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 44 44 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 45 45 H 0.97003 * 120.00297 * 179.97438 * 20 19 17 46 46 H 1.09007 * 113.75783 * 23.23347 * 25 8 6 47 47 H 1.08999 * 113.82249 * 251.81230 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2942 2.1619 1.2117 5 6 3.1744 3.3442 0.7487 6 6 2.7694 3.4754 -0.7378 7 1 1.9760 4.2138 -0.8533 8 7 3.9328 3.8401 -1.5573 9 6 3.5579 3.9682 -2.9829 10 6 4.8679 3.2195 -3.2883 11 6 4.7310 2.1606 -4.3841 12 7 6.0408 1.5608 -4.6499 13 6 6.1634 0.5967 -5.5836 14 8 5.1895 0.2259 -6.2041 15 6 7.5120 -0.0160 -5.8614 16 16 7.3510 -1.2646 -7.1619 17 6 9.0254 -1.8002 -7.2808 18 1 9.7797 -1.3596 -6.6457 19 6 9.3750 -2.7890 -8.1899 20 7 8.4554 -3.3271 -8.9629 21 14 11.1499 -3.3573 -8.3155 22 1 11.9815 -2.6016 -7.3445 23 1 11.2278 -4.8086 -8.0103 24 1 11.6517 -3.1132 -9.6916 25 6 4.7637 2.6514 -1.8618 26 6 2.2712 2.0963 -1.1098 27 8 2.1210 1.6945 -2.2443 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 2.8323 1.5532 1.9383 34 1 1.3637 2.5308 1.6429 35 1 4.2331 3.1034 0.8448 36 1 2.9306 4.2517 1.3010 37 1 3.5458 4.9969 -3.3431 38 1 2.6606 3.4112 -3.2528 39 1 5.7244 3.8770 -3.4374 40 1 4.3531 2.6264 -5.2942 41 1 4.0366 1.3868 -4.0567 42 1 6.8197 1.8570 -4.1534 43 1 8.2039 0.7608 -6.1872 44 1 7.8925 -0.4840 -4.9536 45 1 8.6996 -4.0180 -9.5986 46 1 4.2196 1.7086 -1.8032 47 1 5.7134 2.6296 -1.3275 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692283167.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:13 Heat of formation + Delta-G solvation = -55.354637 kcal Electronic energy + Delta-G solvation = -27401.614074 eV Core-core repulsion = 23517.745323 eV Total energy + Delta-G solvation = -3883.868750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.56532 -40.68605 -39.69316 -37.59848 -35.96907 -34.61094 -34.57327 -31.99326 -30.73019 -29.51504 -27.87213 -27.49735 -27.25778 -25.07364 -24.15712 -22.21956 -21.92498 -20.96907 -20.06355 -19.79606 -18.12635 -17.91701 -17.65937 -17.27822 -17.07293 -16.89074 -16.71201 -16.26679 -15.87376 -15.52628 -15.20341 -15.09837 -14.66827 -14.59524 -14.54139 -14.48323 -14.26858 -13.95320 -13.45872 -13.32413 -13.17770 -13.16881 -12.91553 -12.82223 -12.70395 -12.61146 -12.39806 -12.16043 -11.92811 -11.84716 -11.69483 -11.57808 -11.40640 -11.16515 -10.95798 -10.28138 -10.16144 -9.83012 -9.62026 -8.68662 -8.35237 -6.14050 1.25806 1.41343 1.41457 1.46491 1.58033 1.58921 1.97525 2.23957 2.27598 2.71129 2.98812 3.28611 3.32003 3.38235 3.58363 3.67191 3.86655 3.97278 4.03215 4.10171 4.16772 4.20442 4.23638 4.28521 4.41323 4.44223 4.47683 4.48587 4.59271 4.64056 4.71216 4.73732 4.77804 4.83781 4.87995 4.99503 5.04607 5.18279 5.21976 5.24124 5.41343 5.43202 5.57259 5.82122 6.06777 6.19590 6.49495 7.05695 7.06028 7.23140 8.74456 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017638 B = 0.002069 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.087927 B =13528.485496 C =14126.596114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.114 3.886 3 N -0.618 5.618 4 C 0.097 3.903 5 C -0.108 4.108 6 C 0.014 3.986 7 H 0.127 0.873 8 N -0.444 5.444 9 C 0.003 3.997 10 C -0.111 4.111 11 C 0.137 3.863 12 N -0.708 5.708 13 C 0.530 3.470 14 O -0.570 6.570 15 C -0.126 4.126 16 S -0.157 6.157 17 C -0.544 4.544 18 H 0.084 0.916 19 C 0.010 3.990 20 N -0.913 5.913 21 Si 1.002 2.998 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.000 4.000 26 C 0.480 3.520 27 O -0.568 6.568 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.107 0.893 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.109 0.891 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.417 0.583 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.271 0.729 46 H 0.057 0.943 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.924 17.939 29.122 35.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.007 4.007 3 N -0.351 5.351 4 C -0.025 4.025 5 C -0.146 4.146 6 C -0.099 4.099 7 H 0.144 0.856 8 N -0.166 5.166 9 C -0.126 4.126 10 C -0.130 4.130 11 C 0.013 3.987 12 N -0.363 5.363 13 C 0.315 3.685 14 O -0.449 6.449 15 C -0.277 4.277 16 S 0.070 5.930 17 C -0.691 4.691 18 H 0.102 0.898 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.824 3.176 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.128 4.128 26 C 0.267 3.733 27 O -0.447 6.447 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.140 0.860 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.146 0.854 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.255 0.745 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.435 17.506 27.800 35.128 hybrid contribution 1.364 -1.049 -0.218 1.734 sum -11.071 16.457 27.583 33.973 Atomic orbital electron populations 1.22075 0.94991 1.03058 1.01775 1.21456 0.95029 0.81025 1.03212 1.48614 1.64445 1.13979 1.08083 1.22437 1.00897 0.92793 0.86401 1.22652 1.00961 0.99732 0.91271 1.23181 0.96103 0.92919 0.97668 0.85563 1.68860 1.12003 1.28429 1.07288 1.24126 0.97200 1.02232 0.89078 1.23114 1.00693 0.96533 0.92687 1.21253 0.84172 0.95047 0.98245 1.45711 1.12100 1.38830 1.39616 1.20192 0.89740 0.79293 0.79226 1.90697 1.41184 1.62475 1.50522 1.23352 0.97636 1.02614 1.04120 1.85658 1.14915 1.45696 1.46723 1.23231 0.93662 1.26077 1.26163 0.89762 1.26187 1.03904 0.95300 0.94016 1.70205 1.35810 1.26454 1.22458 0.84859 0.76138 0.78085 0.78554 1.17881 1.19915 1.19900 1.24225 0.99852 0.93011 0.95730 1.22216 0.76698 0.89754 0.84621 1.90751 1.54914 1.76380 1.22700 0.90708 0.94904 0.90348 0.92957 0.87489 0.88203 0.88889 0.89463 0.85992 0.87285 0.90496 0.85405 0.92592 0.93870 0.74539 0.86867 0.87145 0.92000 0.92468 0.87382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 10.24 71.98 0.74 -1.35 16 2 C 0.11 1.66 6.65 86.38 0.57 2.23 16 3 N -0.62 -8.97 2.93 -817.97 -2.40 -11.36 16 4 C 0.10 0.55 7.35 86.84 0.64 1.19 16 5 C -0.11 -0.65 6.78 31.66 0.21 -0.44 16 6 C 0.01 0.19 3.10 44.91 0.14 0.33 16 7 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 8 N -0.44 -6.87 6.22 -881.86 -5.49 -12.36 16 9 C 0.00 0.05 7.22 86.41 0.62 0.67 16 10 C -0.11 -2.08 3.93 -10.16 -0.04 -2.12 16 11 C 0.14 3.82 5.51 86.38 0.48 4.29 16 12 N -0.71 -20.19 5.56 -463.07 -2.57 -22.76 16 13 C 0.53 21.36 7.85 87.66 0.69 22.05 16 14 O -0.57 -29.12 15.86 -3.04 -0.05 -29.16 16 15 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 16 S -0.16 -9.06 20.57 -56.49 -1.16 -10.22 16 17 C -0.54 -31.69 9.50 67.95 0.65 -31.04 16 18 H 0.08 4.54 7.80 -2.91 -0.02 4.52 16 19 C 0.01 0.60 5.49 84.86 0.47 1.07 16 20 N -0.91 -57.27 13.22 21.65 0.29 -56.98 16 21 Si 1.00 44.27 29.55 68.60 2.03 46.30 16 22 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 C 0.00 0.01 6.81 86.35 0.59 0.59 16 26 C 0.48 9.75 5.53 87.90 0.49 10.24 16 27 O -0.57 -17.11 13.70 -3.05 -0.04 -17.15 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.05 1.09 7.93 -2.39 -0.02 1.07 16 32 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.09 0.60 7.84 -2.39 -0.02 0.58 16 36 H 0.12 0.15 8.14 -2.38 -0.02 0.13 16 37 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.85 5.68 -2.38 -0.01 1.83 16 39 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.04 1.51 7.60 -2.39 -0.02 1.49 16 42 H 0.42 8.47 8.47 -92.71 -0.79 7.68 16 43 H 0.11 4.17 8.14 -2.39 -0.02 4.15 16 44 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 45 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 46 H 0.06 1.37 5.00 -2.38 -0.01 1.36 16 47 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -86.78 393.69 -2.53 -89.31 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.19 Total: 21.48 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 6.68 Total: 2.91 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -10.17 Total: -103.47 kcal Atomic # 8 Polarization: -46.22 SS G_CDS: -0.09 Total: -46.31 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -9.06 SS G_CDS: -1.16 Total: -10.22 kcal Total: -86.78 -2.53 -89.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692283167.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.956 kcal (2) G-P(sol) polarization free energy of solvation -86.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds