Wall clock time and date at job start Sat Apr 11 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46499 * 109.47374 * 2 1 4 4 C 1.46761 * 124.35115 * 270.00066 * 3 2 1 5 5 C 1.54486 * 105.47380 * 196.99455 * 4 3 2 6 6 C 1.54628 * 101.76185 * 334.57986 * 5 4 3 7 7 H 1.08999 * 110.60509 * 266.06514 * 6 5 4 8 8 N 1.46904 * 110.48427 * 143.47670 * 6 5 4 9 9 C 1.47960 * 110.99873 * 178.77038 * 8 6 5 10 10 C 1.53937 * 86.17949 * 137.58413 * 9 8 6 11 11 C 1.53000 * 113.73433 * 221.91989 * 10 9 8 12 12 N 1.46502 * 109.46875 * 184.99738 * 11 10 9 13 13 C 1.34781 * 119.99688 * 179.97438 * 12 11 10 14 14 O 1.21276 * 120.00203 * 0.02562 * 13 12 11 15 15 C 1.50699 * 119.99576 * 180.02562 * 13 12 11 16 16 S 1.81008 * 109.46688 * 180.02562 * 15 13 12 17 17 C 1.76209 * 99.99770 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99909 * 359.97438 * 17 16 15 19 19 C 1.38797 * 119.99961 * 180.02562 * 17 16 15 20 20 N 1.31632 * 119.99619 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00131 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46841 * 89.99961 * 21 19 17 23 23 H 1.48495 * 109.47003 * 210.00070 * 21 19 17 24 24 H 1.48500 * 109.46928 * 329.99909 * 21 19 17 25 25 C 1.47958 * 111.00220 * 278.13040 * 8 6 5 26 26 C 1.34421 * 124.34672 * 89.97072 * 3 2 1 27 27 O 1.21280 * 124.94471 * 359.58307 * 26 3 2 28 28 H 1.08994 * 109.47213 * 300.00256 * 1 2 3 29 29 H 1.09005 * 109.46607 * 60.00056 * 1 2 3 30 30 H 1.08997 * 109.46908 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47298 * 240.00266 * 2 1 3 32 32 H 1.09001 * 109.47425 * 120.00317 * 2 1 3 33 33 H 1.09002 * 110.24340 * 315.98903 * 4 3 2 34 34 H 1.09001 * 110.24804 * 77.99364 * 4 3 2 35 35 H 1.09004 * 110.96458 * 216.46765 * 5 4 3 36 36 H 1.08994 * 110.97218 * 92.69661 * 5 4 3 37 37 H 1.09001 * 113.75911 * 23.26902 * 9 8 6 38 38 H 1.09004 * 113.76293 * 251.89925 * 9 8 6 39 39 H 1.09000 * 113.73632 * 90.63756 * 10 9 8 40 40 H 1.08997 * 109.47342 * 304.99593 * 11 10 9 41 41 H 1.09000 * 109.47177 * 65.00366 * 11 10 9 42 42 H 0.97001 * 119.99997 * 0.02562 * 12 11 10 43 43 H 1.09001 * 109.47459 * 300.00023 * 15 13 12 44 44 H 1.09002 * 109.47371 * 60.00440 * 15 13 12 45 45 H 0.97005 * 119.99729 * 180.02562 * 20 19 17 46 46 H 1.09001 * 113.75711 * 108.10017 * 25 8 6 47 47 H 1.08998 * 113.76069 * 336.74148 * 25 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2944 2.1619 -1.2117 5 6 3.1741 3.3444 -0.7485 6 6 2.7687 3.4757 0.7379 7 1 1.9741 4.2126 0.8551 8 7 3.9318 3.8407 1.5577 9 6 3.5505 3.9981 2.9786 10 6 4.8496 3.2394 3.3045 11 6 4.6939 2.2014 4.4177 12 7 6.0026 1.6232 4.7328 13 6 6.1100 0.6806 5.6902 14 8 5.1232 0.3107 6.2904 15 6 7.4563 0.0864 6.0147 16 16 7.2720 -1.1417 7.3316 17 6 8.9477 -1.6584 7.5048 18 1 9.7147 -1.2210 6.8828 19 6 9.2818 -2.6282 8.4398 20 7 8.3467 -3.1623 9.1968 21 14 11.0581 -3.1765 8.6229 22 1 11.7377 -2.3243 9.6314 23 1 11.0957 -4.5933 9.0660 24 1 11.7530 -3.0477 7.3169 25 6 4.7436 2.6484 1.8871 26 6 2.2707 2.0964 1.1098 27 8 2.1203 1.6947 2.2443 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.8328 1.5532 -1.9381 34 1 1.3638 2.5305 -1.6431 35 1 2.9301 4.2518 -1.3010 36 1 4.2329 3.1039 -0.8442 37 1 2.6451 3.4566 3.2530 38 1 3.5487 5.0330 3.3209 39 1 5.7135 3.8889 3.4454 40 1 4.2849 2.6809 5.3070 41 1 4.0183 1.4125 4.0870 42 1 6.7919 1.9194 4.2530 43 1 7.8656 -0.3934 5.1257 44 1 8.1317 0.8755 6.3452 45 1 8.5803 -3.8399 9.8506 46 1 5.6951 2.6049 1.3571 47 1 4.1872 1.7122 1.8421 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692283168.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:16 Heat of formation + Delta-G solvation = -54.864053 kcal Electronic energy + Delta-G solvation = -27381.282949 eV Core-core repulsion = 23497.435472 eV Total energy + Delta-G solvation = -3883.847477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.57769 -40.68641 -39.70403 -37.59920 -35.97032 -34.61143 -34.57373 -31.99394 -30.73023 -29.51543 -27.86995 -27.49543 -27.25898 -25.07291 -24.15863 -22.22357 -21.93187 -20.96759 -20.05639 -19.79147 -18.12866 -17.91534 -17.66055 -17.28138 -17.06971 -16.88719 -16.71696 -16.26918 -15.87481 -15.52745 -15.20322 -15.10317 -14.66772 -14.58876 -14.54685 -14.48657 -14.27585 -13.93997 -13.45734 -13.32963 -13.17388 -13.15531 -12.89073 -12.82234 -12.70713 -12.62253 -12.40564 -12.15854 -11.92245 -11.86188 -11.71045 -11.57503 -11.39875 -11.14746 -10.95753 -10.28546 -10.15964 -9.83657 -9.62366 -8.68615 -8.34970 -6.13939 1.25742 1.41281 1.42649 1.46482 1.57193 1.59033 1.97515 2.24248 2.27878 2.71555 2.98980 3.28670 3.31998 3.37559 3.58244 3.67669 3.86732 3.97449 4.03199 4.10028 4.16782 4.20642 4.23694 4.28593 4.41382 4.43912 4.48127 4.48766 4.59027 4.64087 4.70569 4.73796 4.77816 4.83662 4.88009 4.99710 5.04665 5.18360 5.21572 5.24430 5.41129 5.43573 5.57219 5.82175 6.06573 6.19467 6.49601 7.05790 7.05935 7.23230 8.74461 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017886 B = 0.002054 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.129795 B =13627.759380 C =14227.904241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.618 5.618 4 C 0.097 3.903 5 C -0.108 4.108 6 C 0.014 3.986 7 H 0.126 0.874 8 N -0.444 5.444 9 C 0.004 3.996 10 C -0.111 4.111 11 C 0.137 3.863 12 N -0.709 5.709 13 C 0.530 3.470 14 O -0.570 6.570 15 C -0.126 4.126 16 S -0.157 6.157 17 C -0.545 4.545 18 H 0.084 0.916 19 C 0.011 3.989 20 N -0.913 5.913 21 Si 1.002 2.998 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.257 1.257 25 C -0.002 4.002 26 C 0.480 3.520 27 O -0.568 6.568 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.128 0.872 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.417 0.583 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.271 0.729 46 H 0.107 0.893 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.607 17.510 -29.656 36.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.007 4.007 3 N -0.351 5.351 4 C -0.025 4.025 5 C -0.146 4.146 6 C -0.099 4.099 7 H 0.144 0.856 8 N -0.165 5.165 9 C -0.125 4.125 10 C -0.130 4.130 11 C 0.013 3.987 12 N -0.363 5.363 13 C 0.315 3.685 14 O -0.449 6.449 15 C -0.277 4.277 16 S 0.070 5.930 17 C -0.692 4.692 18 H 0.102 0.898 19 C -0.194 4.194 20 N -0.549 5.549 21 Si 0.823 3.177 22 H -0.192 1.192 23 H -0.203 1.203 24 H -0.181 1.181 25 C -0.130 4.130 26 C 0.267 3.733 27 O -0.448 6.448 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.128 0.872 39 H 0.146 0.854 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.255 0.745 43 H 0.129 0.871 44 H 0.131 0.869 45 H 0.080 0.920 46 H 0.125 0.875 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.135 17.062 -28.377 35.265 hybrid contribution 1.371 -1.010 0.283 1.726 sum -10.763 16.052 -28.094 34.099 Atomic orbital electron populations 1.22075 0.95006 1.03060 1.01769 1.21457 0.95018 0.81016 1.03228 1.48614 1.64445 1.13982 1.08080 1.22439 1.00895 0.92793 0.86401 1.22645 1.00962 0.99720 0.91249 1.23191 0.96065 0.92937 0.97704 0.85603 1.68824 1.12534 1.27599 1.07579 1.24106 0.97168 1.02218 0.89007 1.23122 1.00754 0.96578 0.92553 1.21255 0.84220 0.95386 0.97830 1.45724 1.11559 1.40540 1.38457 1.20191 0.89861 0.79110 0.79292 1.90695 1.40273 1.61690 1.52219 1.23353 0.97681 1.02804 1.03887 1.85659 1.14331 1.47616 1.45382 1.23203 0.93163 1.27357 1.25519 0.89751 1.26186 1.03897 0.95179 0.94120 1.70202 1.35478 1.27136 1.22094 0.84908 0.76130 0.77437 0.79211 1.19218 1.20313 1.18069 1.24232 1.00009 0.93104 0.95654 1.22201 0.76677 0.89759 0.84624 1.90756 1.54891 1.76391 1.22720 0.94916 0.90715 0.90339 0.87471 0.92936 0.88189 0.88895 0.86004 0.89460 0.90669 0.87220 0.85375 0.92598 0.93855 0.74531 0.87149 0.86858 0.92002 0.87505 0.92314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 10.24 71.98 0.74 -1.34 16 2 C 0.11 1.65 6.65 86.38 0.57 2.22 16 3 N -0.62 -8.93 2.93 -817.96 -2.40 -11.33 16 4 C 0.10 0.54 7.35 86.84 0.64 1.18 16 5 C -0.11 -0.65 6.79 31.65 0.21 -0.43 16 6 C 0.01 0.18 3.08 44.91 0.14 0.32 16 7 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 8 N -0.44 -6.87 6.21 -882.54 -5.48 -12.35 16 9 C 0.00 0.07 7.23 86.41 0.62 0.70 16 10 C -0.11 -2.08 3.94 -10.15 -0.04 -2.12 16 11 C 0.14 3.83 5.53 86.38 0.48 4.31 16 12 N -0.71 -20.22 5.56 -463.06 -2.57 -22.79 16 13 C 0.53 21.38 7.85 87.66 0.69 22.06 16 14 O -0.57 -29.13 15.86 -3.02 -0.05 -29.18 16 15 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 16 S -0.16 -9.07 20.57 -56.49 -1.16 -10.23 16 17 C -0.54 -31.77 9.50 67.95 0.65 -31.13 16 18 H 0.08 4.54 7.80 -2.91 -0.02 4.52 16 19 C 0.01 0.62 5.49 84.86 0.47 1.09 16 20 N -0.91 -57.30 13.22 21.65 0.29 -57.02 16 21 Si 1.00 44.26 29.55 68.60 2.03 46.29 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 25 C 0.00 -0.03 6.85 86.40 0.59 0.56 16 26 C 0.48 9.74 5.55 87.90 0.49 10.23 16 27 O -0.57 -17.11 13.72 -3.03 -0.04 -17.15 16 28 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.05 1.09 7.93 -2.39 -0.02 1.07 16 33 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 35 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 36 H 0.09 0.60 7.90 -2.39 -0.02 0.58 16 37 H 0.08 1.79 5.81 -2.39 -0.01 1.78 16 38 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 39 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.04 1.52 7.58 -2.39 -0.02 1.50 16 42 H 0.42 8.47 8.47 -92.71 -0.79 7.69 16 43 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 44 H 0.11 4.17 8.14 -2.39 -0.02 4.16 16 45 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 46 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.06 1.42 4.85 -2.39 -0.01 1.41 16 Total: -1.00 -86.82 393.79 -2.52 -89.34 By element: Atomic # 1 Polarization: 21.37 SS G_CDS: 0.19 Total: 21.56 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 6.68 Total: 2.86 kcal Atomic # 7 Polarization: -93.32 SS G_CDS: -10.17 Total: -103.49 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -0.09 Total: -46.33 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -9.07 SS G_CDS: -1.16 Total: -10.23 kcal Total: -86.82 -2.52 -89.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692283168.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.477 kcal (2) G-P(sol) polarization free energy of solvation -86.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds