Wall clock time and date at job start Sat Apr 11 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99945 * 2 1 4 4 N 1.46498 * 109.47501 * 124.99812 * 3 2 1 5 5 C 1.46768 * 124.34879 * 89.99466 * 4 3 2 6 6 C 1.54480 * 105.55098 * 197.08340 * 5 4 3 7 7 C 1.54631 * 101.76472 * 334.54015 * 6 5 4 8 8 H 1.09000 * 110.48694 * 143.47575 * 7 6 5 9 9 N 1.46891 * 110.48935 * 265.98727 * 7 6 5 10 10 C 1.46901 * 111.00119 * 204.99769 * 9 7 6 11 11 C 1.52999 * 109.47082 * 180.02562 * 10 9 7 12 12 H 1.09007 * 109.47388 * 295.00062 * 11 10 9 13 13 C 1.52996 * 109.47199 * 175.00388 * 11 10 9 14 14 N 1.46502 * 109.47256 * 55.00155 * 11 10 9 15 15 C 1.34779 * 120.00014 * 205.00149 * 14 11 10 16 16 O 1.21283 * 120.00023 * 359.97438 * 15 14 11 17 17 C 1.50700 * 119.99892 * 179.97438 * 15 14 11 18 18 S 1.80997 * 109.46978 * 179.97438 * 17 15 14 19 19 C 1.76211 * 99.99913 * 179.97438 * 18 17 15 20 20 H 1.07998 * 119.99563 * 0.02562 * 19 18 17 21 21 C 1.38794 * 120.00022 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99870 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00005 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47064 * 0.02562 * 23 21 19 25 25 H 1.48492 * 109.47277 * 120.00371 * 23 21 19 26 26 H 1.48500 * 109.47189 * 240.00710 * 23 21 19 27 27 C 1.34621 * 124.47196 * 270.02709 * 4 3 2 28 28 O 1.21280 * 124.90469 * 359.57880 * 27 4 3 29 29 H 1.08006 * 119.99659 * 359.97438 * 1 2 3 30 30 H 1.07992 * 119.99937 * 180.02562 * 1 2 3 31 31 H 1.07996 * 120.00163 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47506 * 4.99893 * 3 2 1 33 33 H 1.08998 * 109.47494 * 244.99712 * 3 2 1 34 34 H 1.09002 * 110.24468 * 78.03845 * 5 4 3 35 35 H 1.09002 * 110.24463 * 316.12602 * 5 4 3 36 36 H 1.08995 * 110.97082 * 92.66028 * 6 5 4 37 37 H 1.08996 * 110.96783 * 216.38630 * 6 5 4 38 38 H 1.00909 * 110.99726 * 81.04508 * 9 7 6 39 39 H 1.08997 * 109.47237 * 300.00004 * 10 9 7 40 40 H 1.08999 * 109.46640 * 60.00167 * 10 9 7 41 41 H 1.09006 * 109.47431 * 180.02562 * 13 11 10 42 42 H 1.09006 * 109.47139 * 299.99486 * 13 11 10 43 43 H 1.08998 * 109.47420 * 59.99840 * 13 11 10 44 44 H 0.96998 * 119.99987 * 24.99990 * 14 11 10 45 45 H 1.09002 * 109.47168 * 300.00360 * 17 15 14 46 46 H 1.09007 * 109.46838 * 59.99956 * 17 15 14 47 47 H 0.97008 * 119.99677 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3792 0.8508 1.0760 6 6 4.8128 0.6667 2.5472 7 6 3.8828 1.6634 3.2771 8 1 3.5754 1.2614 4.2426 9 7 4.5527 2.9590 3.4509 10 6 3.9934 3.6917 4.5946 11 6 4.7143 5.0330 4.7430 12 1 5.7599 4.8576 4.9964 13 6 4.0504 5.8488 5.8540 14 7 4.6352 5.7722 3.4805 15 6 5.5686 6.6974 3.1817 16 8 6.4738 6.9184 3.9582 17 6 5.4876 7.4573 1.8829 18 16 6.8723 8.6179 1.7756 19 6 6.5385 9.3483 0.2071 20 1 5.6781 9.0317 -0.3638 21 6 7.3806 10.3311 -0.2941 22 7 8.4290 10.7173 0.4020 23 14 7.0263 11.1059 -1.9565 24 1 5.7979 10.5022 -2.5323 25 1 6.8271 12.5678 -1.7890 26 1 8.1721 10.8640 -2.8697 27 6 2.6901 1.8001 2.3566 28 8 1.6157 2.2633 2.6758 29 1 -0.5400 0.9354 0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4027 -0.9313 34 1 5.0149 1.5874 0.5847 35 1 4.4270 -0.1009 0.5467 36 1 4.6307 -0.3542 2.8827 37 1 5.8596 0.9386 2.6822 38 1 4.4989 3.5099 2.6072 39 1 2.9305 3.8674 4.4290 40 1 4.1274 3.1044 5.5030 41 1 4.5637 6.8046 5.9594 42 1 3.0048 6.0244 5.6006 43 1 4.1092 5.2989 6.7933 44 1 3.9112 5.5957 2.8597 45 1 5.5343 6.7572 1.0488 46 1 4.5480 8.0085 1.8424 47 1 9.0178 11.4040 0.0515 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699394162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:18 Heat of formation + Delta-G solvation = -72.809609 kcal Electronic energy + Delta-G solvation = -27220.570494 eV Core-core repulsion = 23335.944840 eV Total energy + Delta-G solvation = -3884.625655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70506 -40.74746 -37.96166 -37.58628 -36.14982 -34.59052 -34.48638 -32.74310 -31.32003 -29.98212 -28.12295 -27.65828 -27.16064 -25.48104 -22.80100 -22.48947 -21.52858 -21.21398 -20.46407 -19.85844 -18.19730 -17.89115 -17.50989 -17.36828 -17.02762 -16.87976 -16.41409 -15.99238 -15.91430 -15.48394 -15.18848 -15.05104 -14.74500 -14.70487 -14.52650 -14.26668 -13.99594 -13.88514 -13.70684 -13.35531 -13.19872 -13.15580 -12.93524 -12.90823 -12.70493 -12.57006 -12.38903 -12.29924 -12.05867 -11.81025 -11.68939 -11.40761 -11.15803 -10.90949 -10.48873 -10.26917 -10.14591 -9.78063 -9.47797 -8.65729 -8.34719 -6.12259 1.12396 1.27060 1.38895 1.41046 1.46957 1.58120 1.63909 2.15154 2.24858 2.29389 2.96105 2.99381 3.30052 3.32524 3.57933 3.79052 3.90247 4.00480 4.05569 4.08781 4.12893 4.22348 4.27387 4.33977 4.36001 4.49281 4.53696 4.62712 4.66226 4.69813 4.74308 4.75159 4.93176 5.05515 5.12181 5.15456 5.26392 5.41984 5.47307 5.51784 5.59129 5.70782 5.79607 6.03460 6.09856 6.20030 6.45741 7.03896 7.06744 7.24723 8.74667 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010524 B = 0.002564 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.831057 B =10917.070279 C =12662.067951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.181 4.181 3 C 0.145 3.855 4 N -0.609 5.609 5 C 0.093 3.907 6 C -0.115 4.115 7 C 0.060 3.940 8 H 0.119 0.881 9 N -0.658 5.658 10 C 0.058 3.942 11 C 0.147 3.853 12 H 0.078 0.922 13 C -0.159 4.159 14 N -0.711 5.711 15 C 0.540 3.460 16 O -0.559 6.559 17 C -0.131 4.131 18 S -0.146 6.146 19 C -0.545 4.545 20 H 0.081 0.919 21 C 0.013 3.987 22 N -0.910 5.910 23 Si 0.998 3.002 24 H -0.258 1.258 25 H -0.275 1.275 26 H -0.272 1.272 27 C 0.477 3.523 28 O -0.574 6.574 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.125 0.875 32 H 0.066 0.934 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.341 0.659 39 H 0.042 0.958 40 H 0.111 0.889 41 H 0.038 0.962 42 H 0.064 0.936 43 H 0.089 0.911 44 H 0.406 0.594 45 H 0.108 0.892 46 H 0.103 0.897 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.805 -27.026 1.583 30.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.200 4.200 3 C 0.023 3.977 4 N -0.342 5.342 5 C -0.028 4.028 6 C -0.153 4.153 7 C -0.054 4.054 8 H 0.137 0.863 9 N -0.289 5.289 10 C -0.071 4.071 11 C 0.042 3.958 12 H 0.097 0.903 13 C -0.218 4.218 14 N -0.365 5.365 15 C 0.326 3.674 16 O -0.437 6.437 17 C -0.282 4.282 18 S 0.082 5.918 19 C -0.693 4.693 20 H 0.099 0.901 21 C -0.192 4.192 22 N -0.547 5.547 23 Si 0.820 3.180 24 H -0.182 1.182 25 H -0.200 1.200 26 H -0.198 1.198 27 C 0.264 3.736 28 O -0.452 6.452 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.143 0.857 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.097 0.903 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.160 0.840 39 H 0.060 0.940 40 H 0.129 0.871 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.241 0.759 45 H 0.127 0.873 46 H 0.121 0.879 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.233 -26.594 3.358 29.465 hybrid contribution -2.303 0.864 -2.386 3.427 sum -14.536 -25.731 0.972 29.568 Atomic orbital electron populations 1.24056 0.96205 1.02511 0.98690 1.23321 0.96338 0.98862 1.01472 1.20585 0.92057 0.95799 0.89218 1.48530 1.14127 1.60927 1.10635 1.22421 0.79986 1.01504 0.98916 1.22716 1.01145 0.99125 0.92316 1.22494 0.90672 0.92763 0.99426 0.86328 1.60775 1.55458 1.04586 1.08125 1.22360 0.96273 0.92805 0.95699 1.21045 1.01126 0.90189 0.83393 0.90346 1.22115 1.00682 1.00055 0.98920 1.45859 1.28625 1.39662 1.22305 1.19942 0.81275 0.79416 0.86777 1.90690 1.35551 1.66071 1.51392 1.23380 1.04370 1.01828 0.98636 1.85553 1.33475 1.45719 1.27098 1.23222 1.15281 1.26001 1.04825 0.90134 1.26117 0.94058 0.96284 1.02698 1.70190 1.14895 1.29896 1.39719 0.84910 0.78737 0.77793 0.76531 1.18163 1.20008 1.19771 1.22486 0.89534 0.76768 0.84843 1.90698 1.27955 1.47285 1.79292 0.89177 0.86875 0.85716 0.91577 0.87299 0.90333 0.87876 0.87701 0.87259 0.84022 0.93960 0.87108 0.94307 0.91697 0.89229 0.75868 0.87346 0.87850 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 14.32 67.78 0.97 -1.34 16 2 C -0.18 -2.24 9.85 25.65 0.25 -1.98 16 3 C 0.14 1.98 6.38 85.63 0.55 2.52 16 4 N -0.61 -8.74 2.92 -822.01 -2.40 -11.14 16 5 C 0.09 0.79 7.34 86.83 0.64 1.42 16 6 C -0.11 -0.92 6.89 31.65 0.22 -0.70 16 7 C 0.06 0.82 3.25 44.91 0.15 0.96 16 8 H 0.12 1.47 7.82 -2.39 -0.02 1.46 16 9 N -0.66 -10.78 6.30 -491.62 -3.10 -13.88 16 10 C 0.06 0.98 5.15 86.30 0.44 1.42 16 11 C 0.15 3.32 2.88 44.99 0.13 3.45 16 12 H 0.08 2.15 7.58 -2.38 -0.02 2.13 16 13 C -0.16 -3.42 9.48 71.98 0.68 -2.74 16 14 N -0.71 -18.43 4.36 -442.52 -1.93 -20.35 16 15 C 0.54 19.98 7.81 87.66 0.68 20.66 16 16 O -0.56 -25.80 15.53 -3.04 -0.05 -25.84 16 17 C -0.13 -5.24 6.16 71.24 0.44 -4.80 16 18 S -0.15 -8.11 20.57 -56.49 -1.16 -9.27 16 19 C -0.55 -31.25 9.50 67.95 0.65 -30.60 16 20 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -55.98 13.22 21.65 0.29 -55.69 16 23 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 24 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 C 0.48 9.23 7.37 87.87 0.65 9.88 16 28 O -0.57 -16.06 17.58 -3.03 -0.05 -16.12 16 29 H 0.09 1.32 7.84 -2.91 -0.02 1.29 16 30 H 0.11 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 32 H 0.07 1.17 7.58 -2.39 -0.02 1.15 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.11 0.89 8.08 -2.39 -0.02 0.87 16 38 H 0.34 6.23 7.29 -89.69 -0.65 5.57 16 39 H 0.04 0.79 8.12 -2.39 -0.02 0.77 16 40 H 0.11 1.47 8.08 -2.39 -0.02 1.45 16 41 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 42 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.41 8.60 8.15 -92.71 -0.76 7.85 16 45 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 46 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 47 H 0.27 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -81.26 409.29 0.09 -81.17 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.44 Total: 26.04 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 6.91 Total: -0.63 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -7.14 Total: -101.07 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.10 Total: -41.96 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.16 Total: -9.27 kcal Total: -81.26 0.09 -81.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699394162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.356 kcal (2) G-P(sol) polarization free energy of solvation -81.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds