Wall clock time and date at job start Sat Apr 11 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00296 * 2 1 4 4 N 1.46492 * 109.47611 * 124.99934 * 3 2 1 5 5 C 1.46762 * 124.35171 * 89.99929 * 4 3 2 6 6 C 1.54477 * 105.47565 * 162.98904 * 5 4 3 7 7 C 1.54626 * 101.76511 * 25.41374 * 6 5 4 8 8 H 1.08997 * 110.48658 * 216.39141 * 7 6 5 9 9 N 1.46905 * 110.48451 * 93.88374 * 7 6 5 10 10 C 1.46901 * 110.99870 * 155.00159 * 9 7 6 11 11 C 1.53004 * 109.46916 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.46893 * 294.99849 * 11 10 9 13 13 C 1.52997 * 109.46820 * 175.00024 * 11 10 9 14 14 N 1.46498 * 109.46921 * 54.99831 * 11 10 9 15 15 C 1.34779 * 119.99331 * 204.99566 * 14 11 10 16 16 O 1.21273 * 120.00521 * 0.02562 * 15 14 11 17 17 C 1.50701 * 119.99711 * 179.97438 * 15 14 11 18 18 S 1.80994 * 109.47189 * 180.02562 * 17 15 14 19 19 C 1.76205 * 100.00262 * 180.02562 * 18 17 15 20 20 H 1.08005 * 119.99288 * 0.02562 * 19 18 17 21 21 C 1.38793 * 120.00380 * 179.97438 * 19 18 17 22 22 N 1.31632 * 119.99969 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00320 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.46892 * 59.99984 * 23 21 19 25 25 H 1.48496 * 109.47346 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46850 * 300.00339 * 23 21 19 27 27 C 1.34425 * 124.34997 * 270.00345 * 4 3 2 28 28 O 1.21280 * 124.93769 * 0.44288 * 27 4 3 29 29 H 1.08006 * 119.99814 * 180.02562 * 1 2 3 30 30 H 1.07994 * 120.00010 * 0.02562 * 1 2 3 31 31 H 1.08010 * 119.99897 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46720 * 4.99352 * 3 2 1 33 33 H 1.09003 * 109.47258 * 245.00414 * 3 2 1 34 34 H 1.08999 * 110.24646 * 43.98245 * 5 4 3 35 35 H 1.09000 * 110.24577 * 281.98947 * 5 4 3 36 36 H 1.09001 * 110.96835 * 267.29510 * 6 5 4 37 37 H 1.08998 * 110.97405 * 143.53569 * 6 5 4 38 38 H 1.00901 * 110.99869 * 31.04870 * 9 7 6 39 39 H 1.09004 * 109.47031 * 299.99620 * 10 9 7 40 40 H 1.08995 * 109.47111 * 59.99900 * 10 9 7 41 41 H 1.08999 * 109.47245 * 299.99610 * 13 11 10 42 42 H 1.08998 * 109.47499 * 59.99928 * 13 11 10 43 43 H 1.09004 * 109.46976 * 180.02562 * 13 11 10 44 44 H 0.96994 * 120.00657 * 24.99927 * 14 11 10 45 45 H 1.08998 * 109.47409 * 300.01004 * 17 15 14 46 46 H 1.09007 * 109.47101 * 60.00551 * 17 15 14 47 47 H 0.96995 * 120.00432 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3319 1.1313 5 6 4.3792 0.8508 1.0759 6 6 5.0780 1.4635 2.3099 7 6 3.8862 1.6840 3.2700 8 1 4.0219 2.6018 3.8421 9 7 3.7336 0.5349 4.1725 10 6 3.0591 0.9287 5.4167 11 6 2.9193 -0.2915 6.3291 12 1 2.2584 -1.0212 5.8613 13 6 2.3307 0.1417 7.6733 14 7 4.2373 -0.8938 6.5444 15 6 4.3374 -2.1997 6.8627 16 8 3.3367 -2.8761 6.9703 17 6 5.6932 -2.8195 7.0836 18 16 5.4962 -4.5717 7.4921 19 6 7.1855 -5.0308 7.6932 20 1 7.9646 -4.2948 7.5597 21 6 7.5147 -6.3379 8.0243 22 7 6.5651 -7.2347 8.1875 23 14 9.3055 -6.8244 8.2382 24 1 9.9117 -6.0153 9.3259 25 1 9.3887 -8.2654 8.5873 26 1 10.0398 -6.5794 6.9709 27 6 2.6881 1.8003 2.3537 28 8 1.6086 2.2501 2.6752 29 1 -0.5400 -0.9354 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 4.8612 1.1936 0.1604 35 1 4.4030 -0.2376 1.1307 36 1 5.5559 2.4101 2.0575 37 1 5.7987 0.7659 2.7365 38 1 4.6261 0.1056 4.3652 39 1 3.6475 1.6944 5.9223 40 1 2.0704 1.3244 5.1845 41 1 2.9916 0.8713 8.1411 42 1 1.3501 0.5898 7.5131 43 1 2.2315 -0.7275 8.3235 44 1 5.0377 -0.3529 6.4580 45 1 6.2891 -2.7230 6.1760 46 1 6.1967 -2.3090 7.9047 47 1 6.7951 -8.1480 8.4192 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699394163.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:21 Heat of formation + Delta-G solvation = -44.937268 kcal Electronic energy + Delta-G solvation = -27086.652650 eV Core-core repulsion = 23203.235631 eV Total energy + Delta-G solvation = -3883.417019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86223 -39.39760 -37.04598 -36.67578 -35.31903 -33.65966 -32.43002 -31.60796 -30.50401 -28.52546 -27.45729 -26.52093 -25.48502 -24.64092 -22.37599 -21.44499 -20.44149 -20.27766 -19.57307 -17.88960 -17.14666 -16.92268 -16.55375 -16.27193 -15.80645 -15.43355 -15.26576 -14.90916 -14.80773 -14.45280 -14.15006 -14.08160 -13.87975 -13.45179 -13.29314 -13.12286 -13.06363 -12.82446 -12.62455 -12.52039 -12.23761 -11.96504 -11.87946 -11.78931 -11.59716 -11.41686 -11.04877 -11.04633 -10.95537 -10.76642 -10.27869 -9.82290 -9.74528 -9.34927 -9.06596 -9.04503 -8.90455 -8.76898 -8.22964 -6.49470 -6.21505 -3.92023 1.82827 2.30223 2.85189 3.04198 3.13624 3.22645 3.27109 3.30605 3.69184 3.80847 3.91039 4.04876 4.20390 4.42370 4.55928 4.68084 4.75748 4.78815 4.94988 4.97937 5.03110 5.11798 5.13362 5.17385 5.28743 5.29356 5.33078 5.43924 5.47107 5.56294 5.62013 5.62852 5.72104 5.88793 6.10068 6.12974 6.15759 6.18964 6.29797 6.40705 6.52308 6.69138 6.79554 6.97759 7.58697 7.71812 7.93677 8.34639 8.65695 9.23483 10.85831 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013287 B = 0.002240 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.846337 B =12496.552296 C =13116.123842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.180 4.180 3 C 0.155 3.845 4 N -0.613 5.613 5 C 0.107 3.893 6 C -0.137 4.137 7 C 0.054 3.946 8 H 0.082 0.918 9 N -0.667 5.667 10 C 0.052 3.948 11 C 0.146 3.854 12 H 0.096 0.904 13 C -0.163 4.163 14 N -0.735 5.735 15 C 0.534 3.466 16 O -0.514 6.514 17 C -0.153 4.153 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.535 3.465 28 O -0.527 6.527 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.352 0.648 39 H 0.039 0.961 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.392 0.608 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.653 22.393 -15.474 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.199 4.199 3 C 0.033 3.967 4 N -0.347 5.347 5 C -0.016 4.016 6 C -0.175 4.175 7 C -0.060 4.060 8 H 0.099 0.901 9 N -0.303 5.303 10 C -0.077 4.077 11 C 0.041 3.959 12 H 0.114 0.886 13 C -0.222 4.222 14 N -0.390 5.390 15 C 0.320 3.680 16 O -0.387 6.387 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.200 1.200 27 C 0.321 3.679 28 O -0.402 6.402 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.115 0.885 38 H 0.174 0.826 39 H 0.057 0.943 40 H 0.111 0.889 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.225 0.775 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.577 21.091 -15.446 26.957 hybrid contribution 3.455 1.061 0.387 3.635 sum -3.122 22.151 -15.059 26.967 Atomic orbital electron populations 1.23901 0.95882 1.02143 0.98591 1.23249 0.96393 0.98750 1.01513 1.20457 0.91842 0.96140 0.88217 1.48193 1.13202 1.61910 1.11354 1.22051 0.80828 0.99943 0.98767 1.22863 0.96638 1.02748 0.95265 1.22221 0.94105 0.95243 0.94396 0.90067 1.60111 1.28407 1.26876 1.14863 1.22423 1.00792 0.95916 0.88560 1.20910 0.85674 0.94560 0.94734 0.88601 1.22154 1.00705 1.02082 0.97223 1.46064 1.08342 1.10636 1.73914 1.20256 0.91258 0.81030 0.75421 1.90705 1.38299 1.61025 1.48700 1.23530 0.96361 1.05859 1.04640 1.85432 1.10960 0.96224 1.90636 1.22823 0.92086 0.98172 1.55347 0.91039 1.24989 0.98538 0.95380 0.94680 1.70006 1.32359 1.03391 1.44516 0.86232 0.82987 0.77590 0.78734 1.19966 1.20821 1.19962 1.20690 0.88732 0.75931 0.82523 1.90696 1.25727 1.45994 1.77794 0.88131 0.88445 0.87038 0.89742 0.89629 0.90364 0.90460 0.89279 0.88504 0.82631 0.94333 0.88882 0.92674 0.91722 0.91332 0.77504 0.89344 0.89400 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 14.32 29.01 0.42 -1.02 16 2 C -0.18 -1.56 9.85 -36.03 -0.35 -1.91 16 3 C 0.15 1.20 6.37 -5.20 -0.03 1.16 16 4 N -0.61 -5.32 2.92 -173.79 -0.51 -5.82 16 5 C 0.11 0.63 7.35 -3.12 -0.02 0.61 16 6 C -0.14 -0.69 6.84 -25.10 -0.17 -0.86 16 7 C 0.05 0.43 3.26 -67.72 -0.22 0.21 16 8 H 0.08 0.60 7.82 -51.93 -0.41 0.20 16 9 N -0.67 -6.19 6.34 -106.73 -0.68 -6.87 16 10 C 0.05 0.51 5.15 -3.82 -0.02 0.49 16 11 C 0.15 1.76 2.88 -67.93 -0.20 1.56 16 12 H 0.10 1.45 7.58 -51.93 -0.39 1.06 16 13 C -0.16 -1.85 9.48 37.16 0.35 -1.50 16 14 N -0.73 -9.23 4.36 -53.81 -0.23 -9.46 16 15 C 0.53 9.66 7.81 -10.98 -0.09 9.57 16 16 O -0.51 -11.57 15.52 5.56 0.09 -11.48 16 17 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -15.10 9.50 30.94 0.29 -14.80 16 20 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.08 13.22 55.49 0.73 -25.34 16 23 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 C 0.54 5.98 7.64 -10.86 -0.08 5.90 16 28 O -0.53 -7.91 17.57 5.56 0.10 -7.81 16 29 H 0.10 0.79 8.06 -52.48 -0.42 0.37 16 30 H 0.10 0.79 7.84 -52.49 -0.41 0.38 16 31 H 0.11 0.97 8.06 -52.48 -0.42 0.54 16 32 H 0.08 0.72 7.58 -51.93 -0.39 0.32 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.10 0.39 7.56 -51.93 -0.39 0.00 16 38 H 0.35 2.87 6.90 -39.29 -0.27 2.59 16 39 H 0.04 0.31 8.08 -51.93 -0.42 -0.11 16 40 H 0.09 1.04 8.12 -51.93 -0.42 0.62 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.39 3.65 8.15 -40.82 -0.33 3.32 16 45 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 46 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 408.62 15.07 6.16 6.16 Total: -1.00 -36.99 408.62 -9.22 -46.20 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.64 Total: 3.45 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 0.00 Total: -1.38 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.68 Total: -47.50 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: 0.18 Total: -19.29 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.99 -9.22 -46.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699394163.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.263 kcal (2) G-P(sol) polarization free energy of solvation -36.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds