Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46848 * 110.99236 * 2 1 4 4 C 1.53038 * 109.51906 * 185.84899 * 3 2 1 5 5 C 1.53124 * 109.27787 * 300.81772 * 4 3 2 6 6 C 1.53118 * 109.15940 * 57.64897 * 5 4 3 7 7 C 1.46843 * 111.00070 * 124.20239 * 2 1 3 8 8 H 1.08998 * 109.46746 * 294.16864 * 7 2 1 9 9 C 1.50701 * 109.46345 * 54.14786 * 7 2 1 10 10 O 1.21284 * 119.99671 * 20.02127 * 9 7 2 11 11 N 1.34771 * 120.00195 * 200.02629 * 9 7 2 12 12 C 1.46505 * 120.00053 * 180.02562 * 11 9 7 13 13 C 1.53946 * 113.74148 * 154.99630 * 12 11 9 14 14 N 1.47580 * 86.24073 * 138.00144 * 13 12 11 15 15 C 1.34775 * 134.49629 * 155.42618 * 14 13 12 16 16 O 1.21285 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00193 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47021 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99967 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99599 * 359.97438 * 19 18 17 21 21 C 1.38792 * 120.00136 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99797 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00146 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46883 * 90.00454 * 23 21 19 25 25 H 1.48501 * 109.47355 * 209.99765 * 23 21 19 26 26 H 1.48503 * 109.47174 * 330.00171 * 23 21 19 27 27 C 1.47812 * 90.92375 * 335.45714 * 14 13 12 28 28 H 1.09001 * 109.47392 * 295.79684 * 1 2 3 29 29 H 1.09005 * 109.47345 * 55.79782 * 1 2 3 30 30 H 1.08997 * 109.47151 * 175.79739 * 1 2 3 31 31 H 1.09006 * 109.47429 * 65.83366 * 3 2 1 32 32 H 1.08998 * 109.45899 * 305.85269 * 3 2 1 33 33 H 1.08995 * 109.51047 * 180.88022 * 4 3 2 34 34 H 1.08999 * 109.50439 * 60.75526 * 4 3 2 35 35 H 1.09003 * 109.51877 * 297.74971 * 5 4 3 36 36 H 1.08997 * 109.57909 * 177.58541 * 5 4 3 37 37 H 1.09004 * 109.50426 * 182.40474 * 6 5 4 38 38 H 1.09001 * 109.50270 * 62.29035 * 6 5 4 39 39 H 0.97003 * 120.00268 * 359.97438 * 11 9 7 40 40 H 1.08995 * 112.94486 * 23.40443 * 12 11 9 41 41 H 1.09002 * 113.76900 * 252.35847 * 13 12 11 42 42 H 1.09000 * 113.76969 * 23.64268 * 13 12 11 43 43 H 1.08997 * 109.47041 * 299.99450 * 17 15 14 44 44 H 1.09000 * 109.47579 * 59.99837 * 17 15 14 45 45 H 0.97007 * 120.00265 * 179.97438 * 22 21 19 46 46 H 1.08996 * 113.67199 * 270.23445 * 27 14 13 47 47 H 1.08996 * 113.93703 * 138.88096 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9950 1.3710 0.0000 4 6 3.5179 1.3344 -0.1470 5 6 4.1188 0.5372 1.0141 6 6 3.5181 -0.8713 1.0207 7 6 1.9952 -0.7706 1.1338 8 1 1.7326 -0.2706 2.0660 9 6 1.3982 -2.1543 1.1208 10 8 0.9168 -2.5974 0.0996 11 7 1.3991 -2.8992 2.2439 12 6 0.8193 -4.2445 2.2311 13 6 1.3965 -5.1785 3.3102 14 7 0.0079 -5.6306 3.5236 15 6 -0.5555 -6.7550 4.0080 16 8 0.1450 -7.6712 4.3834 17 6 -2.0559 -6.8745 4.0820 18 16 -2.4994 -8.4886 4.7707 19 6 -4.2565 -8.3606 4.7434 20 1 -4.7268 -7.4623 4.3715 21 6 -5.0363 -9.4142 5.1998 22 7 -4.4631 -10.5088 5.6535 23 14 -6.8991 -9.2782 5.1716 24 1 -7.4128 -9.7862 3.8742 25 1 -7.4712 -10.0840 6.2800 26 1 -7.2942 -7.8564 5.3380 27 6 -0.5147 -4.3543 2.9918 28 1 -0.3634 0.4472 0.9252 29 1 -0.3634 0.5777 -0.8500 30 1 -0.3633 -1.0249 -0.0753 31 1 1.7324 1.8610 0.9376 32 1 1.5631 1.9257 -0.8330 33 1 3.9097 2.3513 -0.1313 34 1 3.7810 0.8569 -1.0909 35 1 3.8887 1.0357 1.9557 36 1 5.1998 0.4715 0.8912 37 1 3.9100 -1.4301 1.8706 38 1 3.7812 -1.3834 0.0952 39 1 1.7844 -2.5449 3.0607 40 1 0.7944 -4.6871 1.2354 41 1 2.0546 -5.9524 2.9151 42 1 1.8234 -4.6524 4.1640 43 1 -2.4522 -6.0853 4.7209 44 1 -2.4780 -6.7784 3.0816 45 1 -5.0080 -11.2451 5.9729 46 1 -0.6509 -3.5861 3.7529 47 1 -1.3825 -4.4682 2.3423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001704534540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = -28.165720 kcal Electronic energy + Delta-G solvation = -26926.452169 eV Core-core repulsion = 23043.762419 eV Total energy + Delta-G solvation = -3882.689750 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02779 -40.01609 -38.36489 -37.36371 -34.37817 -33.76090 -32.44153 -31.73146 -30.24630 -27.87774 -27.12203 -26.32990 -25.46943 -24.57406 -23.39275 -21.88756 -21.02222 -20.18700 -19.11381 -17.78920 -17.64603 -17.11876 -16.63461 -16.01520 -15.80272 -15.47270 -15.19816 -14.89869 -14.81474 -14.80278 -14.46760 -14.11434 -13.81632 -13.52737 -13.50143 -13.21464 -12.96021 -12.91503 -12.67602 -12.51064 -12.40912 -12.11253 -11.89210 -11.80048 -11.54604 -11.36458 -11.22360 -11.06935 -11.03163 -10.92922 -10.77503 -9.98148 -9.83935 -9.54920 -9.37981 -9.07779 -8.75624 -8.70181 -8.26167 -6.52249 -6.22752 -3.93855 2.20405 2.39080 2.80037 3.05475 3.21959 3.23640 3.29347 3.46642 3.53798 4.05831 4.16241 4.19080 4.25610 4.39846 4.47001 4.55998 4.61175 4.71292 4.82706 4.87961 4.96136 5.02812 5.10156 5.12487 5.14984 5.17424 5.25345 5.31583 5.39822 5.42083 5.42430 5.53133 5.59057 5.60323 5.61211 5.75623 5.85027 5.86583 5.92164 6.10476 6.12359 6.48222 6.60819 7.07472 7.58567 7.71816 7.85005 8.34172 8.47238 9.22490 10.84693 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.001852 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.162205 B =15115.244011 C =16061.886974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.520 5.520 3 C 0.056 3.944 4 C -0.120 4.120 5 C -0.120 4.120 6 C -0.108 4.108 7 C 0.071 3.929 8 H 0.062 0.938 9 C 0.519 3.481 10 O -0.513 6.513 11 N -0.721 5.721 12 C 0.113 3.887 13 C 0.102 3.898 14 N -0.649 5.649 15 C 0.560 3.440 16 O -0.512 6.512 17 C -0.145 4.145 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.276 1.276 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.091 3.909 28 H 0.021 0.979 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.034 0.966 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.402 0.598 40 H 0.130 0.870 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.090 0.910 45 H 0.269 0.731 46 H 0.086 0.914 47 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.667 27.716 -9.061 33.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.245 5.245 3 C -0.072 4.072 4 C -0.158 4.158 5 C -0.157 4.157 6 C -0.146 4.146 7 C -0.042 4.042 8 H 0.079 0.921 9 C 0.305 3.695 10 O -0.386 6.386 11 N -0.373 5.373 12 C 0.007 3.993 13 C -0.022 4.022 14 N -0.389 5.389 15 C 0.350 3.650 16 O -0.385 6.385 17 C -0.296 4.296 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.746 3.254 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.034 4.034 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.052 0.948 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.237 0.763 40 H 0.147 0.853 41 H 0.108 0.892 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.104 0.896 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.373 25.405 -9.525 32.217 hybrid contribution -2.213 1.786 0.842 2.966 sum 15.160 27.191 -8.683 32.320 Atomic orbital electron populations 1.22613 0.86338 1.04370 1.00153 1.61656 1.08428 1.13098 1.41356 1.22153 0.95724 0.88523 1.00771 1.21628 0.94317 1.00315 0.99542 1.21578 1.00343 0.95048 0.98768 1.21566 0.91297 0.98207 1.03537 1.21610 0.96629 0.91907 0.94007 0.92055 1.20504 0.78767 0.87035 0.83236 1.90719 1.44257 1.72139 1.31523 1.45946 1.61940 1.16313 1.13144 1.23134 0.93078 0.82134 1.00988 1.23377 0.86690 0.95917 0.96215 1.49769 1.08125 1.15092 1.65898 1.20025 0.90082 0.79822 0.75073 1.90723 1.63996 1.37525 1.46271 1.23480 0.92847 1.07786 1.05465 1.85398 1.06056 1.10697 1.81177 1.22854 0.90967 1.05111 1.49429 0.90902 1.24993 0.99615 0.94472 0.94493 1.70018 1.35982 1.04940 1.39307 0.86157 0.83006 0.78287 0.77986 1.20224 1.20727 1.19700 1.23682 0.98365 0.85212 0.96140 0.96060 0.91111 0.89200 0.94827 0.90211 0.91267 0.90755 0.91978 0.91105 0.90814 0.90157 0.76284 0.85260 0.89231 0.89767 0.89304 0.89172 0.92154 0.89619 0.89257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.09 60.06 0.55 0.65 16 2 N -0.52 -4.16 4.51 -236.33 -1.07 -5.22 16 3 C 0.06 0.33 5.46 -3.83 -0.02 0.30 16 4 C -0.12 -0.58 6.09 -26.65 -0.16 -0.74 16 5 C -0.12 -0.51 6.00 -26.61 -0.16 -0.67 16 6 C -0.11 -0.59 5.36 -26.65 -0.14 -0.73 16 7 C 0.07 0.48 2.24 -68.87 -0.15 0.32 16 8 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 9 C 0.52 4.56 6.26 -10.99 -0.07 4.49 16 10 O -0.51 -6.60 14.12 5.55 0.08 -6.52 16 11 N -0.72 -4.77 5.37 -55.07 -0.30 -5.07 16 12 C 0.11 1.00 4.43 -69.79 -0.31 0.69 16 13 C 0.10 1.02 8.58 -2.97 -0.03 0.99 16 14 N -0.65 -9.06 3.62 -177.53 -0.64 -9.71 16 15 C 0.56 10.89 8.08 -10.99 -0.09 10.80 16 16 O -0.51 -11.98 16.59 5.55 0.09 -11.89 16 17 C -0.15 -3.02 5.91 36.01 0.21 -2.81 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.37 9.50 30.94 0.29 -15.07 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.09 0.91 8.43 -2.85 -0.02 0.89 16 28 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 30 H 0.09 0.93 5.62 -51.93 -0.29 0.64 16 31 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 37 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 1.53 8.73 -40.82 -0.36 1.17 16 40 H 0.13 1.38 7.46 -51.93 -0.39 0.99 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 0.66 8.12 -51.93 -0.42 0.23 16 43 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 44 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 396.03 15.07 5.97 5.97 Total: -1.00 -36.94 396.03 -10.33 -47.26 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -7.76 Total: -3.06 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -0.20 Total: 1.13 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: -1.27 Total: -45.52 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.17 Total: -18.41 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.94 -10.33 -47.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704534540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.096 kcal (2) G-P(sol) polarization free energy of solvation -36.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds