Wall clock time and date at job start Sat Apr 11 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46848 * 110.99236 * 2 1 4 4 C 1.53038 * 109.51906 * 185.84899 * 3 2 1 5 5 C 1.53124 * 109.27787 * 300.81772 * 4 3 2 6 6 C 1.53118 * 109.15940 * 57.64897 * 5 4 3 7 7 C 1.46843 * 111.00070 * 124.20239 * 2 1 3 8 8 H 1.08998 * 109.46746 * 294.16864 * 7 2 1 9 9 C 1.50701 * 109.46345 * 54.14786 * 7 2 1 10 10 O 1.21284 * 119.99671 * 20.02127 * 9 7 2 11 11 N 1.34771 * 120.00195 * 200.02629 * 9 7 2 12 12 C 1.46505 * 120.00053 * 180.02562 * 11 9 7 13 13 C 1.53946 * 113.74148 * 154.99630 * 12 11 9 14 14 N 1.47580 * 86.24073 * 138.00144 * 13 12 11 15 15 C 1.34775 * 134.49629 * 155.42618 * 14 13 12 16 16 O 1.21285 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.50699 * 120.00193 * 180.02562 * 15 14 13 18 18 S 1.81004 * 109.47021 * 179.97438 * 17 15 14 19 19 C 1.76203 * 99.99967 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99599 * 359.97438 * 19 18 17 21 21 C 1.38792 * 120.00136 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99797 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00146 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46883 * 90.00454 * 23 21 19 25 25 H 1.48501 * 109.47355 * 209.99765 * 23 21 19 26 26 H 1.48503 * 109.47174 * 330.00171 * 23 21 19 27 27 C 1.47812 * 90.92375 * 335.45714 * 14 13 12 28 28 H 1.09001 * 109.47392 * 295.79684 * 1 2 3 29 29 H 1.09005 * 109.47345 * 55.79782 * 1 2 3 30 30 H 1.08997 * 109.47151 * 175.79739 * 1 2 3 31 31 H 1.09006 * 109.47429 * 65.83366 * 3 2 1 32 32 H 1.08998 * 109.45899 * 305.85269 * 3 2 1 33 33 H 1.08995 * 109.51047 * 180.88022 * 4 3 2 34 34 H 1.08999 * 109.50439 * 60.75526 * 4 3 2 35 35 H 1.09003 * 109.51877 * 297.74971 * 5 4 3 36 36 H 1.08997 * 109.57909 * 177.58541 * 5 4 3 37 37 H 1.09004 * 109.50426 * 182.40474 * 6 5 4 38 38 H 1.09001 * 109.50270 * 62.29035 * 6 5 4 39 39 H 0.97003 * 120.00268 * 359.97438 * 11 9 7 40 40 H 1.08995 * 112.94486 * 23.40443 * 12 11 9 41 41 H 1.09002 * 113.76900 * 252.35847 * 13 12 11 42 42 H 1.09000 * 113.76969 * 23.64268 * 13 12 11 43 43 H 1.08997 * 109.47041 * 299.99450 * 17 15 14 44 44 H 1.09000 * 109.47579 * 59.99837 * 17 15 14 45 45 H 0.97007 * 120.00265 * 179.97438 * 22 21 19 46 46 H 1.08996 * 113.67199 * 270.23445 * 27 14 13 47 47 H 1.08996 * 113.93703 * 138.88096 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9950 1.3710 0.0000 4 6 3.5179 1.3344 -0.1470 5 6 4.1188 0.5372 1.0141 6 6 3.5181 -0.8713 1.0207 7 6 1.9952 -0.7706 1.1338 8 1 1.7326 -0.2706 2.0660 9 6 1.3982 -2.1543 1.1208 10 8 0.9168 -2.5974 0.0996 11 7 1.3991 -2.8992 2.2439 12 6 0.8193 -4.2445 2.2311 13 6 1.3965 -5.1785 3.3102 14 7 0.0079 -5.6306 3.5236 15 6 -0.5555 -6.7550 4.0080 16 8 0.1450 -7.6712 4.3834 17 6 -2.0559 -6.8745 4.0820 18 16 -2.4994 -8.4886 4.7707 19 6 -4.2565 -8.3606 4.7434 20 1 -4.7268 -7.4623 4.3715 21 6 -5.0363 -9.4142 5.1998 22 7 -4.4631 -10.5088 5.6535 23 14 -6.8991 -9.2782 5.1716 24 1 -7.4128 -9.7862 3.8742 25 1 -7.4712 -10.0840 6.2800 26 1 -7.2942 -7.8564 5.3380 27 6 -0.5147 -4.3543 2.9918 28 1 -0.3634 0.4472 0.9252 29 1 -0.3634 0.5777 -0.8500 30 1 -0.3633 -1.0249 -0.0753 31 1 1.7324 1.8610 0.9376 32 1 1.5631 1.9257 -0.8330 33 1 3.9097 2.3513 -0.1313 34 1 3.7810 0.8569 -1.0909 35 1 3.8887 1.0357 1.9557 36 1 5.1998 0.4715 0.8912 37 1 3.9100 -1.4301 1.8706 38 1 3.7812 -1.3834 0.0952 39 1 1.7844 -2.5449 3.0607 40 1 0.7944 -4.6871 1.2354 41 1 2.0546 -5.9524 2.9151 42 1 1.8234 -4.6524 4.1640 43 1 -2.4522 -6.0853 4.7209 44 1 -2.4780 -6.7784 3.0816 45 1 -5.0080 -11.2451 5.9729 46 1 -0.6509 -3.5861 3.7529 47 1 -1.3825 -4.4682 2.3423 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001704534540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:30 Heat of formation + Delta-G solvation = -56.218179 kcal Electronic energy + Delta-G solvation = -26927.668615 eV Core-core repulsion = 23043.762419 eV Total energy + Delta-G solvation = -3883.906196 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.82099 -40.94757 -39.28014 -38.43317 -35.11841 -34.61197 -34.30631 -32.37131 -31.58445 -29.00438 -27.77274 -27.64703 -27.17577 -25.19162 -23.87774 -22.74571 -21.67947 -20.72085 -20.38869 -19.55543 -18.34424 -18.14427 -17.81266 -16.97356 -16.88597 -16.69076 -16.31571 -16.00642 -15.93141 -15.69045 -15.39150 -15.18078 -14.79742 -14.53029 -14.30567 -14.01433 -13.90771 -13.83246 -13.80077 -13.63976 -13.20087 -13.18262 -13.00856 -12.90864 -12.69729 -12.62647 -12.40272 -12.30556 -11.84517 -11.76342 -11.59648 -11.31459 -11.16669 -11.08344 -10.60536 -10.33126 -10.19084 -9.85454 -9.26823 -8.71094 -8.37041 -6.16185 1.14523 1.39135 1.41193 1.47934 1.52628 1.52732 1.76738 2.17539 2.24946 2.95822 2.97072 3.11472 3.29925 3.52340 3.64035 3.83802 3.86109 4.00168 4.02796 4.09883 4.18540 4.22505 4.33354 4.37723 4.41299 4.48694 4.50283 4.53068 4.58230 4.61247 4.78957 4.79971 4.84911 4.87744 5.00262 5.07170 5.09845 5.22227 5.28260 5.39151 5.40229 5.48362 5.96382 6.12031 6.17313 6.42553 6.55203 7.02813 7.04002 7.22362 8.72277 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.001852 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.162205 B =15115.244011 C =16061.886974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.543 5.543 3 C 0.056 3.944 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.106 4.106 7 C 0.073 3.927 8 H 0.085 0.915 9 C 0.519 3.481 10 O -0.558 6.558 11 N -0.701 5.701 12 C 0.130 3.870 13 C 0.104 3.896 14 N -0.648 5.648 15 C 0.559 3.441 16 O -0.564 6.564 17 C -0.121 4.121 18 S -0.148 6.148 19 C -0.548 4.548 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 1.000 3.000 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.258 1.258 27 C 0.090 3.910 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.064 0.936 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.421 0.579 40 H 0.111 0.889 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.272 0.728 46 H 0.116 0.884 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.699 31.038 -8.602 36.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.269 5.269 3 C -0.071 4.071 4 C -0.158 4.158 5 C -0.154 4.154 6 C -0.144 4.144 7 C -0.038 4.038 8 H 0.103 0.897 9 C 0.306 3.694 10 O -0.435 6.435 11 N -0.355 5.355 12 C 0.023 3.977 13 C -0.019 4.019 14 N -0.385 5.385 15 C 0.348 3.652 16 O -0.443 6.443 17 C -0.272 4.272 18 S 0.079 5.921 19 C -0.695 4.695 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.821 3.179 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.182 1.182 27 C -0.033 4.033 28 H 0.051 0.949 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.075 0.925 39 H 0.260 0.740 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.137 0.863 43 H 0.125 0.875 44 H 0.121 0.879 45 H 0.081 0.919 46 H 0.134 0.866 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 17.446 28.813 -9.065 34.881 hybrid contribution -2.104 0.896 0.611 2.367 sum 15.342 29.709 -8.453 34.489 Atomic orbital electron populations 1.22495 0.86863 1.02826 1.00849 1.61631 1.08228 1.14519 1.42478 1.22204 0.96245 0.87392 1.01299 1.21636 0.93738 1.01221 0.99157 1.21579 1.00658 0.94091 0.99057 1.21590 0.90422 0.99185 1.03232 1.21672 0.97131 0.90371 0.94655 0.89697 1.20960 0.77905 0.87780 0.82758 1.90712 1.46312 1.73180 1.33325 1.45706 1.61178 1.15034 1.13597 1.22664 0.92482 0.83016 0.99581 1.23680 0.84659 0.95882 0.97674 1.49681 1.10693 1.14678 1.63453 1.19650 0.89202 0.80888 0.75458 1.90698 1.64618 1.39799 1.49152 1.23279 0.94662 1.03515 1.05707 1.85554 1.07137 1.16902 1.82499 1.23185 0.91046 1.05714 1.49604 0.90001 1.26138 1.05454 0.93837 0.93669 1.70180 1.38218 1.05930 1.40315 0.84941 0.75665 0.79000 0.78291 1.19344 1.20097 1.18175 1.24015 0.98842 0.83666 0.96803 0.94932 0.90919 0.91723 0.93751 0.90291 0.89714 0.92314 0.90564 0.90313 0.88842 0.92453 0.74047 0.87124 0.89851 0.86344 0.87493 0.87919 0.91904 0.86565 0.89372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.09 127.69 1.16 1.43 16 2 N -0.54 -7.95 4.51 -901.61 -4.06 -12.01 16 3 C 0.06 0.54 5.46 86.33 0.47 1.01 16 4 C -0.12 -0.91 6.09 30.65 0.19 -0.72 16 5 C -0.12 -0.66 6.00 30.68 0.18 -0.48 16 6 C -0.11 -0.90 5.36 30.65 0.16 -0.74 16 7 C 0.07 0.82 2.24 44.19 0.10 0.92 16 8 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 9 C 0.52 8.25 6.26 87.66 0.55 8.80 16 10 O -0.56 -14.30 14.12 -3.04 -0.04 -14.35 16 11 N -0.70 -7.30 5.37 -446.54 -2.40 -9.70 16 12 C 0.13 2.03 4.43 46.63 0.21 2.24 16 13 C 0.10 1.84 8.58 86.48 0.74 2.58 16 14 N -0.65 -17.09 3.62 -833.96 -3.02 -20.10 16 15 C 0.56 21.69 8.08 87.66 0.71 22.40 16 16 O -0.56 -27.15 16.59 -3.05 -0.05 -27.20 16 17 C -0.12 -5.00 5.91 71.24 0.42 -4.58 16 18 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 19 C -0.55 -31.73 9.50 67.95 0.65 -31.08 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.80 5.49 84.86 0.47 1.27 16 22 N -0.91 -56.29 13.22 21.65 0.29 -56.00 16 23 Si 1.00 43.93 29.55 68.60 2.03 45.95 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 27 C 0.09 1.57 8.43 86.44 0.73 2.30 16 28 H 0.03 0.40 8.14 -2.39 -0.02 0.39 16 29 H 0.07 1.03 8.09 -2.38 -0.02 1.01 16 30 H 0.06 1.34 5.62 -2.39 -0.01 1.33 16 31 H 0.04 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.08 0.75 8.08 -2.39 -0.02 0.73 16 33 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 36 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.42 1.42 8.73 -92.71 -0.81 0.61 16 40 H 0.11 2.28 7.46 -2.39 -0.02 2.27 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.12 1.37 8.12 -2.39 -0.02 1.35 16 43 H 0.11 4.01 8.14 -2.40 -0.02 3.99 16 44 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 45 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 46 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -84.67 396.03 -1.53 -86.20 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.16 Total: 11.42 kcal Atomic # 6 Polarization: -1.39 SS G_CDS: 6.73 Total: 5.34 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -9.19 Total: -97.81 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.09 Total: -41.54 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -84.67 -1.53 -86.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001704534540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.984 kcal (2) G-P(sol) polarization free energy of solvation -84.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds