Wall clock time and date at job start Sat Apr 11 2020 06:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.48537 * 110.99845 * 2 1 4 4 C 1.54934 * 103.22756 * 159.71854 * 3 2 1 5 5 C 1.54593 * 102.92340 * 322.58319 * 4 3 2 6 6 C 1.47910 * 111.00006 * 117.39209 * 2 1 3 7 7 H 1.09003 * 110.07814 * 333.60119 * 6 2 1 8 8 C 1.50693 * 109.91371 * 94.80427 * 6 2 1 9 9 O 1.21279 * 120.00633 * 17.59594 * 8 6 2 10 10 N 1.34789 * 119.99700 * 197.58879 * 8 6 2 11 11 C 1.47059 * 136.05432 * 4.94720 * 10 8 6 12 12 C 1.53501 * 87.98292 * 152.91331 * 11 10 8 13 13 C 1.47064 * 136.05768 * 184.98906 * 10 8 6 14 14 H 1.09006 * 113.46072 * 92.25073 * 13 10 8 15 15 C 1.52998 * 113.46887 * 321.87221 * 13 10 8 16 16 N 1.46495 * 109.47340 * 175.89570 * 15 13 10 17 17 C 1.34777 * 120.00512 * 175.02010 * 16 15 13 18 18 O 1.21280 * 119.99709 * 0.02562 * 17 16 15 19 19 C 1.50704 * 120.00224 * 179.97438 * 17 16 15 20 20 S 1.80997 * 109.46919 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99894 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00146 * 359.97438 * 21 20 19 23 23 C 1.38798 * 119.99717 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00598 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99654 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47110 * 359.97438 * 25 23 21 27 27 H 1.48509 * 109.47223 * 119.99888 * 25 23 21 28 28 H 1.48502 * 109.47000 * 239.99701 * 25 23 21 29 29 H 1.08996 * 109.47720 * 302.60537 * 1 2 3 30 30 H 1.09000 * 109.47124 * 62.61283 * 1 2 3 31 31 H 1.09004 * 109.47062 * 182.60650 * 1 2 3 32 32 H 1.08999 * 110.66564 * 41.28113 * 3 2 1 33 33 H 1.09003 * 110.80866 * 278.21647 * 3 2 1 34 34 H 1.09000 * 110.72668 * 204.22631 * 4 3 2 35 35 H 1.08997 * 110.88064 * 81.01163 * 4 3 2 36 36 H 1.09000 * 110.31062 * 263.04649 * 5 4 3 37 37 H 1.09000 * 110.39491 * 140.91458 * 5 4 3 38 38 H 1.09007 * 113.46461 * 267.68907 * 11 10 8 39 39 H 1.08995 * 113.47111 * 38.07021 * 11 10 8 40 40 H 1.09006 * 114.20246 * 272.47226 * 12 11 10 41 41 H 1.09007 * 114.20658 * 139.65585 * 12 11 10 42 42 H 1.09005 * 109.47507 * 55.89762 * 15 13 10 43 43 H 1.09001 * 109.47038 * 295.89507 * 15 13 10 44 44 H 0.97002 * 119.99988 * 355.02639 * 16 15 13 45 45 H 1.09001 * 109.47228 * 300.00334 * 19 17 16 46 46 H 1.08997 * 109.46693 * 60.00898 * 19 17 16 47 47 H 0.96996 * 120.00547 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0012 1.3867 0.0000 4 6 3.4490 1.2107 0.5228 5 6 3.2982 0.1055 1.5932 6 6 1.9990 -0.6353 1.2260 7 1 1.2770 -0.5431 2.0374 8 6 2.2937 -2.0897 0.9642 9 8 2.3971 -2.4921 -0.1753 10 7 2.4427 -2.9436 1.9964 11 6 2.3086 -2.8703 3.4590 12 6 1.9875 -4.3713 3.4506 13 6 2.8114 -4.3583 2.1557 14 1 3.8783 -4.5132 2.3173 15 6 2.2414 -5.2635 1.0617 16 7 2.7399 -6.6283 1.2482 17 6 2.2903 -7.6239 0.4588 18 8 1.4732 -7.3897 -0.4063 19 6 2.8036 -9.0278 0.6503 20 16 2.0165 -10.1272 -0.5529 21 6 2.7765 -11.6552 -0.1140 22 1 3.4938 -11.6894 0.6925 23 6 2.4541 -12.8145 -0.8058 24 7 1.5802 -12.7727 -1.7892 25 14 3.2593 -14.4344 -0.3401 26 1 4.1970 -14.2142 0.7901 27 1 2.2140 -15.4081 0.0659 28 1 4.0072 -14.9687 -1.5064 29 1 -0.3634 0.5537 0.8656 30 1 -0.3633 0.4727 -0.9125 31 1 -0.3633 -1.0266 0.0467 32 1 1.4236 2.0205 0.6729 33 1 2.0040 1.8004 -1.0085 34 1 3.8122 2.1353 0.9716 35 1 4.1140 0.8848 -0.2770 36 1 3.2134 0.5488 2.5853 37 1 4.1466 -0.5777 1.5559 38 1 3.2414 -2.6288 3.9688 39 1 1.4756 -2.2490 3.7880 40 1 0.9319 -4.6017 3.3065 41 1 2.4455 -4.9309 4.2662 42 1 2.5529 -4.8933 0.0849 43 1 1.1530 -5.2630 1.1203 44 1 3.3937 -6.8156 1.9400 45 1 3.8836 -9.0429 0.5038 46 1 2.5689 -9.3658 1.6597 47 1 1.3551 -13.5828 -2.2729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705187662.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:35 Heat of formation + Delta-G solvation = -50.597823 kcal Electronic energy + Delta-G solvation = -26990.573901 eV Core-core repulsion = 23106.911421 eV Total energy + Delta-G solvation = -3883.662479 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81753 -40.64222 -39.91962 -38.24445 -35.78336 -34.58674 -33.25929 -32.04006 -31.27294 -29.54666 -28.77419 -27.63323 -26.68595 -24.25235 -23.95909 -22.15271 -22.03627 -21.76604 -20.06581 -19.65572 -18.31668 -17.79270 -17.69264 -17.10638 -16.99711 -16.88355 -16.68000 -16.07910 -15.83491 -15.39360 -15.21864 -15.02305 -14.86531 -14.65601 -14.64111 -14.44222 -13.93471 -13.70414 -13.52993 -13.34656 -13.16447 -12.97162 -12.93781 -12.88634 -12.60910 -12.59065 -12.45790 -12.32500 -12.05523 -11.79286 -11.73293 -11.64254 -11.16162 -11.05018 -10.72962 -10.27140 -10.18660 -9.77002 -9.42479 -8.68488 -8.34666 -6.13702 1.23545 1.42050 1.43483 1.55405 1.56569 1.60026 1.67249 2.26728 2.32694 2.97394 2.99518 3.29536 3.31897 3.45825 3.56239 3.71208 3.82780 3.91139 3.96709 4.00602 4.05182 4.20696 4.29965 4.35628 4.40469 4.45568 4.49190 4.49812 4.55835 4.67092 4.68207 4.71751 4.80613 4.90055 4.94522 4.96735 5.00213 5.06792 5.20420 5.25383 5.35896 5.42131 5.79108 5.96479 6.20177 6.46112 6.72151 7.06273 7.18616 7.22869 8.75003 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.001843 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.338687 B =15187.813355 C =15701.085593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.037 3.963 4 C -0.122 4.122 5 C -0.111 4.111 6 C 0.059 3.941 7 H 0.094 0.906 8 C 0.535 3.465 9 O -0.571 6.571 10 N -0.652 5.652 11 C 0.106 3.894 12 C -0.138 4.138 13 C 0.119 3.881 14 H 0.124 0.876 15 C 0.124 3.876 16 N -0.704 5.704 17 C 0.531 3.469 18 O -0.571 6.571 19 C -0.124 4.124 20 S -0.161 6.161 21 C -0.543 4.543 22 H 0.086 0.914 23 C 0.010 3.990 24 N -0.913 5.913 25 Si 1.003 2.997 26 H -0.254 1.254 27 H -0.274 1.274 28 H -0.276 1.276 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.057 0.943 36 H 0.112 0.888 37 H 0.064 0.936 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.128 0.872 42 H 0.037 0.963 43 H 0.050 0.950 44 H 0.421 0.579 45 H 0.112 0.888 46 H 0.118 0.882 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.198 31.431 20.490 37.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.264 5.264 3 C -0.090 4.090 4 C -0.160 4.160 5 C -0.149 4.149 6 C -0.053 4.053 7 H 0.112 0.888 8 C 0.325 3.675 9 O -0.448 6.448 10 N -0.389 5.389 11 C -0.014 4.014 12 C -0.176 4.176 13 C 0.015 3.985 14 H 0.142 0.858 15 C -0.001 4.001 16 N -0.359 5.359 17 C 0.317 3.683 18 O -0.450 6.450 19 C -0.275 4.275 20 S 0.066 5.934 21 C -0.691 4.691 22 H 0.105 0.895 23 C -0.195 4.195 24 N -0.550 5.550 25 Si 0.824 3.176 26 H -0.177 1.177 27 H -0.199 1.199 28 H -0.201 1.201 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.123 0.877 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.083 0.917 38 H 0.138 0.862 39 H 0.115 0.885 40 H 0.104 0.896 41 H 0.147 0.853 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.259 0.741 45 H 0.130 0.870 46 H 0.136 0.864 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.924 31.448 17.679 36.289 hybrid contribution 0.850 -1.193 1.018 1.784 sum 4.773 30.255 18.697 35.885 Atomic orbital electron populations 1.22483 0.86673 1.01315 1.02250 1.64217 1.09190 1.16532 1.36450 1.23320 0.95483 0.87993 1.02159 1.22512 0.96084 0.99375 0.98035 1.22351 0.94181 0.97208 1.01151 1.22326 0.99880 0.89993 0.93068 0.88804 1.20820 0.75789 0.87817 0.83105 1.90733 1.51816 1.78741 1.23553 1.49988 1.68980 1.11134 1.08809 1.23270 1.04052 0.96860 0.77260 1.23573 1.00811 0.97158 0.96038 1.23112 1.01408 0.80145 0.93790 0.85840 1.21351 0.98319 0.81172 0.99234 1.45474 1.46312 1.06749 1.37377 1.20235 0.80669 0.86797 0.80612 1.90713 1.34918 1.84285 1.35045 1.23338 1.04993 0.93899 1.05296 1.85727 1.58775 1.03271 1.45594 1.23240 1.29644 0.93746 1.22423 0.89546 1.26197 0.95556 1.03485 0.94238 1.70206 1.32863 1.30259 1.21670 0.84853 0.78088 0.76060 0.78595 1.17711 1.19894 1.20109 0.92923 0.90541 0.93557 0.91291 0.89924 0.87700 0.92418 0.86963 0.91728 0.86228 0.88470 0.89621 0.85350 0.94487 0.93203 0.74074 0.86963 0.86355 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.40 127.69 1.20 1.56 16 2 N -0.54 -10.67 4.76 -888.43 -4.22 -14.90 16 3 C 0.04 0.47 6.56 86.65 0.57 1.04 16 4 C -0.12 -1.31 7.06 31.80 0.22 -1.09 16 5 C -0.11 -1.15 6.56 31.47 0.21 -0.95 16 6 C 0.06 0.96 2.70 44.31 0.12 1.08 16 7 H 0.09 1.05 7.74 -2.39 -0.02 1.03 16 8 C 0.53 13.02 7.04 87.65 0.62 13.63 16 9 O -0.57 -21.14 15.94 -3.03 -0.05 -21.19 16 10 N -0.65 -11.08 3.57 -833.77 -2.97 -14.05 16 11 C 0.11 0.58 8.42 83.18 0.70 1.28 16 12 C -0.14 -1.10 8.02 30.93 0.25 -0.85 16 13 C 0.12 1.91 4.08 41.79 0.17 2.08 16 14 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 15 C 0.12 3.50 5.39 86.38 0.47 3.97 16 16 N -0.70 -19.09 5.55 -463.06 -2.57 -21.66 16 17 C 0.53 21.09 7.85 87.66 0.69 21.78 16 18 O -0.57 -29.42 15.86 -3.03 -0.05 -29.47 16 19 C -0.12 -5.02 6.16 71.24 0.44 -4.58 16 20 S -0.16 -9.23 20.57 -56.49 -1.16 -10.39 16 21 C -0.54 -31.39 9.50 67.95 0.65 -30.74 16 22 H 0.09 4.59 7.80 -2.91 -0.02 4.56 16 23 C 0.01 0.56 5.49 84.86 0.47 1.02 16 24 N -0.91 -57.31 13.22 21.65 0.29 -57.02 16 25 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 26 H -0.25 -10.28 7.11 99.48 0.71 -9.58 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 29 H 0.05 0.60 8.01 -2.39 -0.02 0.58 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.07 0.57 7.96 -2.39 -0.02 0.55 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.06 0.83 7.68 -2.39 -0.02 0.82 16 38 H 0.12 -0.01 8.14 -2.38 -0.02 -0.03 16 39 H 0.10 0.24 8.14 -2.39 -0.02 0.22 16 40 H 0.09 0.98 7.95 -2.38 -0.02 0.96 16 41 H 0.13 0.25 8.14 -2.38 -0.02 0.23 16 42 H 0.04 1.40 7.05 -2.38 -0.02 1.38 16 43 H 0.05 1.62 7.89 -2.39 -0.02 1.60 16 44 H 0.42 7.28 8.48 -92.71 -0.79 6.50 16 45 H 0.11 4.06 8.14 -2.40 -0.02 4.04 16 46 H 0.12 4.13 8.14 -2.40 -0.02 4.11 16 47 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -95.38 401.14 -1.78 -97.15 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.18 Total: 16.23 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: 6.76 Total: 9.23 kcal Atomic # 7 Polarization: -98.15 SS G_CDS: -9.48 Total: -107.64 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.10 Total: -50.66 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -9.23 SS G_CDS: -1.16 Total: -10.39 kcal Total: -95.38 -1.78 -97.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705187662.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.556 kcal (2) G-P(sol) polarization free energy of solvation -95.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds