Wall clock time and date at job start Sat Apr 11 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47846 * 111.00525 * 2 1 4 4 C 1.54899 * 104.80097 * 213.63577 * 3 2 1 5 5 C 1.55146 * 101.65602 * 37.06675 * 4 3 2 6 6 C 1.47446 * 111.00358 * 239.15669 * 2 1 3 7 7 H 1.09009 * 109.88543 * 242.82961 * 6 2 1 8 8 C 1.50696 * 109.88624 * 3.84899 * 6 2 1 9 9 O 1.21287 * 119.99820 * 53.53743 * 8 6 2 10 10 N 1.34770 * 120.00172 * 233.53214 * 8 6 2 11 11 C 1.47064 * 136.06142 * 4.52332 * 10 8 6 12 12 C 1.53492 * 87.98931 * 207.08021 * 11 10 8 13 13 C 1.47073 * 136.05700 * 184.14876 * 10 8 6 14 14 H 1.08997 * 113.46655 * 267.69681 * 13 10 8 15 15 C 1.52994 * 113.46772 * 38.13410 * 13 10 8 16 16 N 1.46503 * 109.47198 * 185.82756 * 15 13 10 17 17 C 1.34774 * 119.99908 * 184.95686 * 16 15 13 18 18 O 1.21276 * 120.00349 * 359.97438 * 17 16 15 19 19 C 1.50710 * 119.99884 * 180.02562 * 17 16 15 20 20 S 1.81002 * 109.46961 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99710 * 179.97438 * 20 19 17 22 22 H 1.08004 * 120.00239 * 0.02562 * 21 20 19 23 23 C 1.38796 * 120.00096 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99834 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00146 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47200 * 59.99739 * 25 23 21 27 27 H 1.48505 * 109.47260 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.46994 * 299.99526 * 25 23 21 29 29 H 1.08999 * 109.47256 * 172.13213 * 1 2 3 30 30 H 1.09002 * 109.46850 * 52.13962 * 1 2 3 31 31 H 1.08991 * 109.47201 * 292.14026 * 1 2 3 32 32 H 1.09009 * 110.36813 * 332.46642 * 3 2 1 33 33 H 1.09002 * 110.37720 * 94.80184 * 3 2 1 34 34 H 1.08997 * 110.99024 * 278.97712 * 4 3 2 35 35 H 1.08996 * 110.99599 * 155.15950 * 4 3 2 36 36 H 1.08996 * 110.71043 * 205.97053 * 5 4 3 37 37 H 1.08996 * 110.85316 * 82.79513 * 5 4 3 38 38 H 1.09007 * 113.46416 * 321.86183 * 11 10 8 39 39 H 1.08999 * 113.46985 * 92.29506 * 11 10 8 40 40 H 1.09007 * 114.20375 * 87.51688 * 12 11 10 41 41 H 1.08998 * 114.21036 * 220.14222 * 12 11 10 42 42 H 1.08999 * 109.47558 * 305.82605 * 15 13 10 43 43 H 1.09001 * 109.47206 * 65.83028 * 15 13 10 44 44 H 0.96995 * 119.99681 * 4.95506 * 16 15 13 45 45 H 1.09007 * 109.46611 * 299.99886 * 19 17 16 46 46 H 1.08996 * 109.47099 * 59.99419 * 19 17 16 47 47 H 0.97003 * 120.00211 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9989 1.3802 0.0000 4 6 3.3048 1.3027 -0.8295 5 6 2.9160 0.2821 -1.9315 6 6 1.9974 -0.7057 -1.1818 7 1 2.5673 -1.5802 -0.8674 8 6 0.8612 -1.1292 -2.0766 9 8 0.0487 -0.3113 -2.4533 10 7 0.7479 -2.4168 -2.4582 11 6 1.4498 -3.6747 -2.1623 12 6 1.0194 -4.1777 -3.5471 13 6 -0.1364 -3.1833 -3.3490 14 1 -0.9977 -3.6150 -2.8391 15 6 -0.5194 -2.4291 -4.6238 16 7 -1.5051 -3.2098 -5.3756 17 6 -1.9160 -2.7880 -6.5879 18 8 -1.4703 -1.7620 -7.0562 19 6 -2.9304 -3.5908 -7.3611 20 16 -3.2737 -2.7711 -8.9379 21 6 -4.4536 -3.8912 -9.6146 22 1 -4.7458 -4.7693 -9.0577 23 6 -5.0082 -3.6447 -10.8627 24 7 -4.6524 -2.5743 -11.5412 25 14 -6.2597 -4.8318 -11.5798 26 1 -7.4346 -4.9181 -10.6758 27 1 -6.6954 -4.3458 -12.9137 28 1 -5.6433 -6.1755 -11.7203 29 1 -0.3634 -1.0180 -0.1407 30 1 -0.3633 0.6307 -0.8114 31 1 -0.3633 0.3873 0.9518 32 1 1.2889 2.0592 -0.4724 33 1 2.2148 1.7039 1.0182 34 1 4.1302 0.9281 -0.2242 35 1 3.5496 2.2719 -1.2639 36 1 3.8001 -0.2281 -2.3136 37 1 2.3754 0.7723 -2.7411 38 1 2.5285 -3.5560 -2.0595 39 1 1.0068 -4.2359 -1.3396 40 1 1.7065 -3.9149 -4.3515 41 1 0.7123 -5.2234 -3.5673 42 1 -0.9472 -1.4621 -4.3593 43 1 0.3688 -2.2780 -5.2373 44 1 -1.8618 -4.0302 -5.0009 45 1 -2.5362 -4.5895 -7.5494 46 1 -3.8511 -3.6668 -6.7826 47 1 -5.0403 -2.4017 -12.4134 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001705187663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:37 Heat of formation + Delta-G solvation = -46.076285 kcal Electronic energy + Delta-G solvation = -27215.911146 eV Core-core repulsion = 23332.444736 eV Total energy + Delta-G solvation = -3883.466411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.10482 -40.80532 -40.06317 -38.10723 -35.80772 -34.59048 -33.16709 -32.11261 -31.31519 -29.68968 -28.81111 -27.63540 -26.69599 -24.32997 -24.01522 -22.30304 -22.07493 -21.75911 -20.02801 -19.59758 -18.54805 -17.86342 -17.71033 -17.19450 -16.91204 -16.88190 -16.71379 -16.15519 -16.06464 -15.62151 -15.54301 -15.06117 -14.87375 -14.69545 -14.48896 -14.16086 -13.89300 -13.74179 -13.54155 -13.44887 -13.18045 -13.01878 -12.91243 -12.85457 -12.63907 -12.56696 -12.50492 -12.28630 -12.11874 -11.83817 -11.78095 -11.65683 -11.13379 -11.09983 -10.97925 -10.29151 -10.22192 -9.89168 -9.39860 -8.69140 -8.34930 -6.14140 1.22357 1.36777 1.42710 1.44152 1.53029 1.54725 1.66309 2.26625 2.32316 2.91644 2.99059 3.17616 3.30785 3.38223 3.57565 3.62504 3.71093 3.92459 3.97521 3.98734 4.06659 4.20704 4.28506 4.29756 4.42022 4.45596 4.46290 4.48317 4.52839 4.63651 4.67255 4.74280 4.81782 4.88353 4.91691 4.96545 4.99481 5.01018 5.20830 5.22811 5.33791 5.40970 5.70744 5.77577 6.19113 6.43488 6.62015 6.98722 7.05789 7.18867 8.74146 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024841 B = 0.001894 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.878604 B =14779.295100 C =15237.823979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.509 5.509 3 C 0.031 3.969 4 C -0.118 4.118 5 C -0.131 4.131 6 C 0.061 3.939 7 H 0.127 0.873 8 C 0.521 3.479 9 O -0.580 6.580 10 N -0.645 5.645 11 C 0.104 3.896 12 C -0.135 4.135 13 C 0.117 3.883 14 H 0.120 0.880 15 C 0.124 3.876 16 N -0.704 5.704 17 C 0.532 3.468 18 O -0.570 6.570 19 C -0.125 4.125 20 S -0.159 6.159 21 C -0.545 4.545 22 H 0.086 0.914 23 C 0.010 3.990 24 N -0.913 5.913 25 Si 1.001 2.999 26 H -0.262 1.262 27 H -0.280 1.280 28 H -0.259 1.259 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.078 0.922 32 H 0.034 0.966 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.047 0.953 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.127 0.873 42 H 0.037 0.963 43 H 0.055 0.945 44 H 0.421 0.579 45 H 0.118 0.882 46 H 0.111 0.889 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.074 -5.637 28.974 34.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.233 5.233 3 C -0.096 4.096 4 C -0.155 4.155 5 C -0.170 4.170 6 C -0.050 4.050 7 H 0.145 0.855 8 C 0.311 3.689 9 O -0.460 6.460 10 N -0.381 5.381 11 C -0.017 4.017 12 C -0.173 4.173 13 C 0.013 3.987 14 H 0.138 0.862 15 C -0.001 4.001 16 N -0.360 5.360 17 C 0.318 3.682 18 O -0.449 6.449 19 C -0.276 4.276 20 S 0.068 5.932 21 C -0.693 4.693 22 H 0.104 0.896 23 C -0.194 4.194 24 N -0.549 5.549 25 Si 0.823 3.177 26 H -0.187 1.187 27 H -0.205 1.205 28 H -0.184 1.184 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.066 0.934 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.110 0.890 41 H 0.145 0.855 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.259 0.741 45 H 0.136 0.864 46 H 0.129 0.871 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.567 -3.439 28.419 34.120 hybrid contribution -2.117 -0.928 -0.944 2.496 sum 16.451 -4.367 27.475 32.320 Atomic orbital electron populations 1.22779 0.87843 1.01220 1.01646 1.64203 1.08218 1.15737 1.35190 1.23286 0.96122 0.88282 1.01944 1.22709 0.97361 0.99577 0.95887 1.22782 0.99319 0.96807 0.98099 1.22730 0.93167 1.00112 0.88970 0.85542 1.21258 0.86866 0.80474 0.80280 1.90722 1.45542 1.52244 1.57445 1.50086 1.35695 1.06376 1.45965 1.23305 1.00032 0.80102 0.98270 1.23610 0.95611 1.00469 0.97603 1.23173 0.97192 0.90011 0.88327 0.86247 1.21340 0.91662 0.94665 0.92441 1.45478 1.44497 1.28447 1.17549 1.20208 0.81584 0.84795 0.81611 1.90707 1.57930 1.26536 1.69683 1.23345 1.01129 1.03304 0.99846 1.85692 1.55992 1.36422 1.15069 1.23173 1.28095 1.11349 1.06640 0.89595 1.26187 0.99101 0.97843 0.96274 1.70194 1.43454 1.27653 1.13622 0.84965 0.77668 0.77916 0.77194 1.18656 1.20533 1.18382 0.92786 0.94672 0.90369 0.94731 0.87942 0.88168 0.89553 0.87752 0.93409 0.87848 0.86752 0.89026 0.85489 0.94420 0.92638 0.74123 0.86379 0.87058 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.28 8.19 127.69 1.05 1.33 16 2 N -0.51 -9.00 5.44 -890.93 -4.85 -13.85 16 3 C 0.03 0.47 6.73 86.77 0.58 1.05 16 4 C -0.12 -1.35 7.08 31.98 0.23 -1.12 16 5 C -0.13 -1.99 6.45 31.78 0.20 -1.78 16 6 C 0.06 1.00 3.81 44.51 0.17 1.17 16 7 H 0.13 1.37 7.33 -2.38 -0.02 1.35 16 8 C 0.52 11.75 5.05 87.66 0.44 12.19 16 9 O -0.58 -18.96 13.34 -3.05 -0.04 -19.00 16 10 N -0.65 -10.56 3.56 -833.27 -2.97 -13.53 16 11 C 0.10 0.59 8.02 83.17 0.67 1.26 16 12 C -0.14 -0.99 8.03 31.01 0.25 -0.74 16 13 C 0.12 1.79 4.07 41.87 0.17 1.96 16 14 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 15 C 0.12 3.29 5.51 86.38 0.48 3.77 16 16 N -0.70 -18.45 5.55 -463.06 -2.57 -21.02 16 17 C 0.53 20.59 7.85 87.66 0.69 21.28 16 18 O -0.57 -28.56 15.86 -3.02 -0.05 -28.61 16 19 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 20 S -0.16 -9.01 20.57 -56.49 -1.16 -10.17 16 21 C -0.54 -31.28 9.50 67.95 0.65 -30.63 16 22 H 0.09 4.51 7.80 -2.91 -0.02 4.49 16 23 C 0.01 0.60 5.49 84.86 0.47 1.07 16 24 N -0.91 -56.88 13.22 21.65 0.29 -56.59 16 25 Si 1.00 43.71 29.55 68.60 2.03 45.74 16 26 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 27 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 28 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 29 H 0.05 1.17 7.02 -2.39 -0.02 1.16 16 30 H 0.03 0.97 5.79 -2.39 -0.01 0.96 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.03 0.65 7.65 -2.38 -0.02 0.64 16 33 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.05 1.04 7.67 -2.39 -0.02 1.02 16 38 H 0.10 0.23 7.92 -2.38 -0.02 0.21 16 39 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.09 0.91 7.95 -2.38 -0.02 0.89 16 41 H 0.13 0.22 8.14 -2.39 -0.02 0.21 16 42 H 0.04 1.34 7.06 -2.39 -0.02 1.33 16 43 H 0.06 1.66 7.87 -2.39 -0.02 1.64 16 44 H 0.42 7.08 8.48 -92.71 -0.79 6.30 16 45 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 46 H 0.11 3.98 8.14 -2.40 -0.02 3.96 16 47 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -89.59 392.64 -2.67 -92.25 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.19 Total: 18.52 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 6.47 Total: 6.25 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -10.10 Total: -104.99 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.09 Total: -47.60 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.16 Total: -10.17 kcal Total: -89.59 -2.67 -92.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001705187663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.177 kcal (2) G-P(sol) polarization free energy of solvation -89.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds