Wall clock time and date at job start Sat Apr 11 2020 06:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99776 * 2 1 4 4 N 1.46497 * 109.46719 * 125.00158 * 3 2 1 5 5 C 1.34776 * 120.00027 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99668 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00489 * 179.97438 * 5 4 3 8 8 H 1.09005 * 109.46825 * 59.99680 * 7 5 4 9 9 C 1.53003 * 109.47205 * 300.00306 * 7 5 4 10 10 N 1.46897 * 109.47547 * 179.97438 * 7 5 4 11 11 C 1.46894 * 111.00247 * 205.00108 * 10 7 5 12 12 H 1.08995 * 112.85190 * 23.80899 * 11 10 7 13 13 C 1.53785 * 113.61215 * 155.00542 * 11 10 7 14 14 C 1.53781 * 87.08277 * 140.06731 * 13 11 10 15 15 H 1.09002 * 113.61228 * 220.01683 * 14 13 11 16 16 N 1.46500 * 113.61711 * 89.19510 * 14 13 11 17 17 C 1.34778 * 119.99919 * 156.52821 * 16 14 13 18 18 O 1.21277 * 119.99902 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99998 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.47089 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99822 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00196 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99912 * 180.02562 * 21 20 19 24 24 N 1.31632 * 120.00178 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99978 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47130 * 89.99790 * 25 23 21 27 27 H 1.48497 * 109.47247 * 209.99545 * 25 23 21 28 28 H 1.48495 * 109.47202 * 329.99628 * 25 23 21 29 29 C 1.53776 * 113.69354 * 252.53562 * 11 10 7 30 30 H 1.08004 * 120.00153 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99900 * 180.02562 * 1 2 3 32 32 H 1.07994 * 119.99742 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47124 * 5.00298 * 3 2 1 34 34 H 1.08996 * 109.47050 * 244.99728 * 3 2 1 35 35 H 0.97003 * 120.00396 * 359.97438 * 4 3 2 36 36 H 1.08996 * 109.47242 * 299.99661 * 9 7 5 37 37 H 1.08999 * 109.46995 * 59.99929 * 9 7 5 38 38 H 1.08998 * 109.46951 * 179.97438 * 9 7 5 39 39 H 1.00895 * 111.00340 * 328.96162 * 10 7 5 40 40 H 1.08993 * 113.61827 * 25.51090 * 13 11 10 41 41 H 1.09006 * 113.60734 * 254.61118 * 13 11 10 42 42 H 0.96998 * 119.99853 * 336.53388 * 16 14 13 43 43 H 1.08998 * 109.46903 * 300.00568 * 19 17 16 44 44 H 1.09005 * 109.46573 * 60.00422 * 19 17 16 45 45 H 0.96994 * 120.00339 * 180.02562 * 24 23 21 46 46 H 1.09003 * 113.61687 * 105.45874 * 29 11 10 47 47 H 1.09009 * 113.61565 * 334.56222 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4086 1.3329 6 8 3.7158 3.3552 0.5773 7 6 4.7355 2.4364 2.4971 8 1 5.4401 1.6095 2.4081 9 6 3.9521 2.3005 3.8042 10 7 5.4710 3.7080 2.4964 11 6 6.7624 3.5697 3.1826 12 1 7.1275 2.5428 3.1946 13 6 7.8156 4.5927 2.7252 14 6 8.2352 4.7027 4.2006 15 1 8.4654 5.7209 4.5143 16 7 9.2683 3.7400 4.5904 17 6 10.0618 3.9948 5.6496 18 8 9.9201 5.0209 6.2804 19 6 11.1250 3.0048 6.0502 20 16 12.0151 3.6280 7.4978 21 6 13.1627 2.3133 7.7406 22 1 13.1546 1.4601 7.0784 23 6 14.0767 2.3736 8.7835 24 7 14.0863 3.4132 9.5909 25 14 15.2930 0.9795 9.0414 26 1 16.5315 1.2540 8.2695 27 1 15.6233 0.8714 10.4851 28 1 14.6911 -0.2952 8.5745 29 6 6.8078 4.2558 4.5581 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1317 0.0896 34 1 2.6213 1.4027 -0.9313 35 1 3.0446 0.5747 1.7356 36 1 3.2475 3.1273 3.8932 37 1 3.4068 1.3567 3.8045 38 1 4.6440 2.3202 4.6462 39 1 5.5960 4.0529 1.5565 40 1 7.3871 5.5107 2.3234 41 1 8.5867 4.1676 2.0826 42 1 9.3814 2.9191 4.0860 43 1 10.6590 2.0500 6.2938 44 1 11.8236 2.8681 5.2247 45 1 14.7252 3.4555 10.3195 46 1 6.7652 3.5590 5.3952 47 1 6.1036 5.0819 4.6575 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713154529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:43 Heat of formation + Delta-G solvation = -31.318273 kcal Electronic energy + Delta-G solvation = -26015.652665 eV Core-core repulsion = 22132.826209 eV Total energy + Delta-G solvation = -3882.826455 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.60705 -39.91154 -38.18520 -36.43310 -35.29950 -33.45395 -32.73072 -32.43049 -30.05816 -28.79741 -26.96091 -25.83192 -25.50945 -24.56665 -22.80221 -21.10646 -20.86233 -20.15897 -19.43454 -17.85556 -17.74133 -17.01558 -16.41822 -16.34876 -16.03796 -15.57884 -15.27561 -15.17613 -14.84407 -14.80750 -14.52240 -13.95015 -13.83984 -13.80547 -13.18165 -13.04613 -12.82630 -12.72925 -12.61832 -12.57124 -12.42940 -12.15636 -11.81193 -11.73503 -11.66526 -11.07010 -11.03058 -10.77694 -10.70584 -10.67990 -10.45790 -9.99637 -9.81691 -9.57756 -9.40134 -9.07467 -8.93884 -8.75978 -8.23846 -6.50279 -6.22061 -3.92638 1.44134 2.16143 2.75212 3.01552 3.07486 3.21757 3.27359 3.31179 3.69473 3.79459 4.12271 4.19898 4.24237 4.30921 4.42079 4.45384 4.64968 4.70457 4.85102 4.85346 4.94941 5.12974 5.13157 5.13942 5.17767 5.22555 5.40321 5.43755 5.57072 5.60554 5.70722 5.77569 5.84117 5.86735 5.89215 5.90243 5.97387 6.04669 6.06253 6.12876 6.57140 6.77403 6.94361 7.06773 7.58925 7.70870 7.71098 8.34600 8.62031 9.23196 10.85366 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.001593 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.484259 B =17570.209942 C =18426.787559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.146 3.854 4 N -0.727 5.727 5 C 0.513 3.487 6 O -0.531 6.531 7 C 0.067 3.933 8 H 0.071 0.929 9 C -0.137 4.137 10 N -0.659 5.659 11 C 0.058 3.942 12 H 0.074 0.926 13 C -0.149 4.149 14 C 0.124 3.876 15 H 0.105 0.895 16 N -0.722 5.722 17 C 0.534 3.466 18 O -0.514 6.514 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.273 1.273 29 C -0.135 4.135 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.403 0.597 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.356 0.644 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.396 0.604 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.069 0.931 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.292 -7.911 -19.990 33.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.023 3.977 4 N -0.380 5.380 5 C 0.299 3.701 6 O -0.407 6.407 7 C -0.046 4.046 8 H 0.088 0.912 9 C -0.195 4.195 10 N -0.294 5.294 11 C -0.052 4.052 12 H 0.092 0.908 13 C -0.188 4.188 14 C 0.017 3.983 15 H 0.123 0.877 16 N -0.376 5.376 17 C 0.320 3.680 18 O -0.388 6.388 19 C -0.304 4.304 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 C -0.175 4.175 30 H 0.119 0.881 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.237 0.763 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.090 0.910 39 H 0.179 0.821 40 H 0.120 0.880 41 H 0.091 0.909 42 H 0.230 0.770 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.810 -5.148 -18.798 32.342 hybrid contribution 1.447 -3.536 -1.246 4.019 sum -24.363 -8.684 -20.044 32.722 Atomic orbital electron populations 1.24019 0.95785 1.02573 0.97670 1.22997 0.96281 0.98036 1.02492 1.20419 0.91834 0.95703 0.89735 1.45971 1.41100 1.20076 1.30879 1.20798 0.81207 0.82086 0.86043 1.90713 1.67914 1.35022 1.47028 1.21579 0.95361 0.93511 0.94148 0.91170 1.21760 1.00420 1.01742 0.95560 1.60562 1.19112 1.25114 1.24613 1.23249 0.87701 0.97747 0.96458 0.90849 1.23615 0.97984 1.00438 0.96738 1.21609 0.87513 0.94834 0.94303 0.87692 1.45727 1.35785 1.23413 1.32652 1.20316 0.81196 0.87256 0.79203 1.90704 1.69431 1.26781 1.51869 1.23536 0.99530 1.01146 1.06216 1.85415 1.39120 1.29378 1.29328 1.22871 1.20550 1.06976 1.18075 0.90955 1.24987 0.97068 0.96639 0.94836 1.70015 1.35491 1.28470 1.16273 0.86172 0.80553 0.81190 0.77602 1.20270 1.20739 1.19735 1.23556 0.96692 1.01177 0.96082 0.88089 0.87750 0.86616 0.90941 0.90620 0.76274 0.91314 0.92354 0.90963 0.82113 0.88037 0.90877 0.76996 0.89269 0.89242 0.92168 0.91211 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.53 14.32 29.01 0.42 -0.11 16 2 C -0.18 -0.65 9.63 -36.02 -0.35 -1.00 16 3 C 0.15 0.80 6.11 -5.19 -0.03 0.77 16 4 N -0.73 -4.06 5.44 -61.47 -0.33 -4.39 16 5 C 0.51 4.28 7.18 -10.99 -0.08 4.20 16 6 O -0.53 -6.44 15.65 5.55 0.09 -6.36 16 7 C 0.07 0.48 3.02 -68.87 -0.21 0.27 16 8 H 0.07 0.41 7.46 -51.93 -0.39 0.02 16 9 C -0.14 -0.87 9.31 37.16 0.35 -0.52 16 10 N -0.66 -5.65 6.25 -100.11 -0.63 -6.28 16 11 C 0.06 0.48 3.85 -66.90 -0.26 0.22 16 12 H 0.07 0.56 7.47 -51.93 -0.39 0.17 16 13 C -0.15 -1.28 7.39 -25.92 -0.19 -1.47 16 14 C 0.12 1.44 4.30 -67.12 -0.29 1.15 16 15 H 0.11 1.44 7.50 -51.93 -0.39 1.06 16 16 N -0.72 -9.35 5.27 -53.02 -0.28 -9.63 16 17 C 0.53 9.81 7.85 -10.98 -0.09 9.72 16 18 O -0.51 -11.61 15.48 5.56 0.09 -11.52 16 19 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -15.22 9.50 30.94 0.29 -14.92 16 22 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 25 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C -0.14 -1.39 7.68 -25.92 -0.20 -1.59 16 30 H 0.10 0.32 7.84 -52.48 -0.41 -0.10 16 31 H 0.10 0.23 8.06 -52.48 -0.42 -0.19 16 32 H 0.12 0.31 8.06 -52.49 -0.42 -0.12 16 33 H 0.07 0.46 7.79 -51.93 -0.40 0.06 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.40 1.29 7.88 -40.82 -0.32 0.97 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.25 7.56 -51.93 -0.39 -0.15 16 38 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 39 H 0.36 3.35 7.26 -39.29 -0.29 3.06 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.40 3.96 8.71 -40.82 -0.36 3.61 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 44 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 409.47 15.07 6.17 6.17 Total: -1.00 -35.96 409.47 -9.43 -45.39 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.53 Total: 3.61 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: -0.51 Total: -4.10 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.51 Total: -45.66 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.17 Total: -17.88 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.96 -9.43 -45.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713154529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.072 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds