Wall clock time and date at job start Sat Apr 11 2020 06:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99776 * 2 1 4 4 N 1.46497 * 109.46719 * 125.00158 * 3 2 1 5 5 C 1.34776 * 120.00027 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99668 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.00489 * 179.97438 * 5 4 3 8 8 H 1.09005 * 109.46825 * 59.99680 * 7 5 4 9 9 C 1.53003 * 109.47205 * 300.00306 * 7 5 4 10 10 N 1.46897 * 109.47547 * 179.97438 * 7 5 4 11 11 C 1.46894 * 111.00247 * 205.00108 * 10 7 5 12 12 H 1.08995 * 112.85190 * 23.80899 * 11 10 7 13 13 C 1.53785 * 113.61215 * 155.00542 * 11 10 7 14 14 C 1.53781 * 87.08277 * 140.06731 * 13 11 10 15 15 H 1.09002 * 113.61228 * 220.01683 * 14 13 11 16 16 N 1.46500 * 113.61711 * 89.19510 * 14 13 11 17 17 C 1.34778 * 119.99919 * 156.52821 * 16 14 13 18 18 O 1.21277 * 119.99902 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99998 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.47089 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99822 * 180.02562 * 20 19 17 22 22 H 1.08002 * 120.00196 * 359.97438 * 21 20 19 23 23 C 1.38803 * 119.99912 * 180.02562 * 21 20 19 24 24 N 1.31632 * 120.00178 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99978 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47130 * 89.99790 * 25 23 21 27 27 H 1.48497 * 109.47247 * 209.99545 * 25 23 21 28 28 H 1.48495 * 109.47202 * 329.99628 * 25 23 21 29 29 C 1.53776 * 113.69354 * 252.53562 * 11 10 7 30 30 H 1.08004 * 120.00153 * 0.02562 * 1 2 3 31 31 H 1.08003 * 119.99900 * 180.02562 * 1 2 3 32 32 H 1.07994 * 119.99742 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47124 * 5.00298 * 3 2 1 34 34 H 1.08996 * 109.47050 * 244.99728 * 3 2 1 35 35 H 0.97003 * 120.00396 * 359.97438 * 4 3 2 36 36 H 1.08996 * 109.47242 * 299.99661 * 9 7 5 37 37 H 1.08999 * 109.46995 * 59.99929 * 9 7 5 38 38 H 1.08998 * 109.46951 * 179.97438 * 9 7 5 39 39 H 1.00895 * 111.00340 * 328.96162 * 10 7 5 40 40 H 1.08993 * 113.61827 * 25.51090 * 13 11 10 41 41 H 1.09006 * 113.60734 * 254.61118 * 13 11 10 42 42 H 0.96998 * 119.99853 * 336.53388 * 16 14 13 43 43 H 1.08998 * 109.46903 * 300.00568 * 19 17 16 44 44 H 1.09005 * 109.46573 * 60.00422 * 19 17 16 45 45 H 0.96994 * 120.00339 * 180.02562 * 24 23 21 46 46 H 1.09003 * 113.61687 * 105.45874 * 29 11 10 47 47 H 1.09009 * 113.61565 * 334.56222 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4086 1.3329 6 8 3.7158 3.3552 0.5773 7 6 4.7355 2.4364 2.4971 8 1 5.4401 1.6095 2.4081 9 6 3.9521 2.3005 3.8042 10 7 5.4710 3.7080 2.4964 11 6 6.7624 3.5697 3.1826 12 1 7.1275 2.5428 3.1946 13 6 7.8156 4.5927 2.7252 14 6 8.2352 4.7027 4.2006 15 1 8.4654 5.7209 4.5143 16 7 9.2683 3.7400 4.5904 17 6 10.0618 3.9948 5.6496 18 8 9.9201 5.0209 6.2804 19 6 11.1250 3.0048 6.0502 20 16 12.0151 3.6280 7.4978 21 6 13.1627 2.3133 7.7406 22 1 13.1546 1.4601 7.0784 23 6 14.0767 2.3736 8.7835 24 7 14.0863 3.4132 9.5909 25 14 15.2930 0.9795 9.0414 26 1 16.5315 1.2540 8.2695 27 1 15.6233 0.8714 10.4851 28 1 14.6911 -0.2952 8.5745 29 6 6.8078 4.2558 4.5581 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1317 0.0896 34 1 2.6213 1.4027 -0.9313 35 1 3.0446 0.5747 1.7356 36 1 3.2475 3.1273 3.8932 37 1 3.4068 1.3567 3.8045 38 1 4.6440 2.3202 4.6462 39 1 5.5960 4.0529 1.5565 40 1 7.3871 5.5107 2.3234 41 1 8.5867 4.1676 2.0826 42 1 9.3814 2.9191 4.0860 43 1 10.6590 2.0500 6.2938 44 1 11.8236 2.8681 5.2247 45 1 14.7252 3.4555 10.3195 46 1 6.7652 3.5590 5.3952 47 1 6.1036 5.0819 4.6575 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713154529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:42 Heat of formation + Delta-G solvation = -59.273827 kcal Electronic energy + Delta-G solvation = -26016.864909 eV Core-core repulsion = 22132.826209 eV Total energy + Delta-G solvation = -3884.038699 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.39718 -40.85821 -39.35955 -36.92869 -36.08125 -34.57625 -34.20929 -33.59054 -31.01418 -29.99787 -27.66135 -27.42393 -26.60882 -25.28731 -23.53187 -22.14908 -21.54964 -20.67150 -20.33777 -19.81083 -18.34024 -17.96875 -17.46745 -17.12106 -16.87153 -16.86055 -16.50050 -16.18872 -16.11782 -15.70366 -15.62100 -15.24247 -14.67103 -14.50458 -14.42888 -14.22729 -13.86258 -13.50081 -13.36238 -13.28488 -13.23922 -13.15336 -13.04637 -12.88760 -12.71709 -12.59508 -12.41107 -12.06361 -11.72513 -11.51298 -11.46672 -11.13232 -10.98473 -10.94106 -10.50098 -10.25764 -10.09024 -10.04219 -9.46148 -8.65436 -8.33487 -6.11570 1.15311 1.27872 1.43400 1.48162 1.53983 1.58250 1.61799 2.25334 2.26158 2.29922 3.00791 3.15875 3.33288 3.53094 3.59099 3.70989 3.85723 3.94201 4.00415 4.07374 4.13295 4.19103 4.24099 4.32916 4.51903 4.52491 4.55121 4.72572 4.79646 4.85642 4.86830 4.90627 4.98895 5.01893 5.10669 5.16154 5.30130 5.33604 5.42964 5.59390 5.63721 5.75959 6.04460 6.20907 6.32685 6.51211 6.53316 7.07857 7.15961 7.27763 8.75745 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020682 B = 0.001593 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.484259 B =17570.209942 C =18426.787559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.181 4.181 3 C 0.145 3.855 4 N -0.713 5.713 5 C 0.511 3.489 6 O -0.575 6.575 7 C 0.069 3.931 8 H 0.093 0.907 9 C -0.133 4.133 10 N -0.670 5.670 11 C 0.073 3.927 12 H 0.092 0.908 13 C -0.133 4.133 14 C 0.111 3.889 15 H 0.078 0.922 16 N -0.694 5.694 17 C 0.536 3.464 18 O -0.565 6.565 19 C -0.129 4.129 20 S -0.153 6.153 21 C -0.547 4.547 22 H 0.084 0.916 23 C 0.014 3.986 24 N -0.912 5.912 25 Si 0.998 3.002 26 H -0.268 1.268 27 H -0.278 1.278 28 H -0.257 1.257 29 C -0.132 4.132 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.131 0.869 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.417 0.583 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.353 0.647 40 H 0.105 0.895 41 H 0.088 0.912 42 H 0.416 0.584 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.271 0.729 46 H 0.061 0.939 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.770 -11.173 -21.633 35.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.200 4.200 3 C 0.022 3.978 4 N -0.366 5.366 5 C 0.297 3.703 6 O -0.454 6.454 7 C -0.044 4.044 8 H 0.111 0.889 9 C -0.191 4.191 10 N -0.305 5.305 11 C -0.036 4.036 12 H 0.109 0.891 13 C -0.172 4.172 14 C 0.004 3.996 15 H 0.096 0.904 16 N -0.347 5.347 17 C 0.322 3.678 18 O -0.443 6.443 19 C -0.280 4.280 20 S 0.074 5.926 21 C -0.694 4.694 22 H 0.102 0.898 23 C -0.191 4.191 24 N -0.548 5.548 25 Si 0.820 3.180 26 H -0.194 1.194 27 H -0.204 1.204 28 H -0.181 1.181 29 C -0.172 4.172 30 H 0.116 0.884 31 H 0.137 0.863 32 H 0.148 0.852 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.254 0.746 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.086 0.914 39 H 0.175 0.825 40 H 0.124 0.876 41 H 0.107 0.893 42 H 0.253 0.747 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -26.334 -8.479 -20.483 34.422 hybrid contribution 1.432 -2.499 -0.828 2.997 sum -24.902 -10.978 -21.311 34.565 Atomic orbital electron populations 1.24180 0.95793 1.03183 0.96753 1.22952 0.96314 0.97460 1.03242 1.20408 0.91578 0.96513 0.89286 1.45894 1.40059 1.19772 1.30835 1.21053 0.81390 0.81951 0.85864 1.90695 1.69358 1.36734 1.48656 1.21647 0.95411 0.93512 0.93790 0.88930 1.21751 1.00075 1.02395 0.94918 1.60495 1.19234 1.26318 1.24430 1.23127 0.87609 0.98285 0.94627 0.89082 1.23529 0.98178 1.00974 0.94477 1.21749 0.87594 0.93230 0.96981 0.90359 1.45402 1.34464 1.24156 1.30697 1.20086 0.81448 0.86207 0.80057 1.90696 1.70941 1.28686 1.53971 1.23370 0.99659 1.01872 1.03098 1.85620 1.41022 1.31588 1.34340 1.23216 1.20660 1.07064 1.18495 0.89818 1.26123 0.99154 0.99497 0.94317 1.70185 1.36652 1.30927 1.17062 0.84954 0.77663 0.77744 0.77622 1.19368 1.20373 1.18105 1.23500 0.95340 1.01109 0.97267 0.88376 0.86324 0.85160 0.92235 0.91538 0.74631 0.93024 0.89899 0.91364 0.82461 0.87623 0.89295 0.74687 0.87046 0.87129 0.92019 0.92003 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.78 14.32 67.78 0.97 0.19 16 2 C -0.18 -0.99 9.63 25.65 0.25 -0.75 16 3 C 0.15 1.47 6.11 85.64 0.52 1.99 16 4 N -0.71 -6.75 5.44 -466.79 -2.54 -9.29 16 5 C 0.51 7.86 7.18 87.66 0.63 8.49 16 6 O -0.58 -13.82 15.65 -3.05 -0.05 -13.87 16 7 C 0.07 0.83 3.02 44.17 0.13 0.96 16 8 H 0.09 0.73 7.46 -2.38 -0.02 0.72 16 9 C -0.13 -1.42 9.31 71.98 0.67 -0.75 16 10 N -0.67 -10.36 6.25 -470.63 -2.94 -13.30 16 11 C 0.07 1.04 3.85 45.44 0.17 1.21 16 12 H 0.09 1.02 7.47 -2.39 -0.02 1.00 16 13 C -0.13 -2.00 7.39 31.12 0.23 -1.77 16 14 C 0.11 2.46 4.30 45.52 0.20 2.66 16 15 H 0.08 2.21 7.50 -2.39 -0.02 2.19 16 16 N -0.69 -16.69 5.27 -440.04 -2.32 -19.01 16 17 C 0.54 19.41 7.85 87.66 0.69 20.10 16 18 O -0.57 -26.24 15.48 -3.02 -0.05 -26.28 16 19 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 20 S -0.15 -8.44 20.57 -56.49 -1.16 -9.61 16 21 C -0.55 -30.95 9.50 67.96 0.65 -30.31 16 22 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 23 C 0.01 0.78 5.49 84.86 0.47 1.25 16 24 N -0.91 -55.93 13.22 21.65 0.29 -55.65 16 25 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 28 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 29 C -0.13 -2.58 7.68 31.12 0.24 -2.34 16 30 H 0.10 0.52 7.84 -2.91 -0.02 0.49 16 31 H 0.12 0.25 8.06 -2.91 -0.02 0.23 16 32 H 0.13 0.35 8.06 -2.91 -0.02 0.32 16 33 H 0.06 0.76 7.79 -2.39 -0.02 0.74 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.42 1.56 7.88 -92.71 -0.73 0.83 16 36 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.46 7.56 -2.39 -0.02 0.44 16 38 H 0.07 0.81 8.07 -2.39 -0.02 0.79 16 39 H 0.35 6.15 7.26 -89.70 -0.65 5.49 16 40 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.42 6.89 8.71 -92.71 -0.81 6.09 16 43 H 0.11 3.81 8.14 -2.40 -0.02 3.79 16 44 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -81.64 409.47 -1.69 -83.33 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: -1.20 Total: 22.05 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 6.25 Total: -3.59 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -7.51 Total: -97.25 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.09 Total: -40.16 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.61 kcal Total: -81.64 -1.69 -83.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713154529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.055 kcal (2) G-P(sol) polarization free energy of solvation -81.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds