Wall clock time and date at job start Sat Apr 11 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99809 * 2 1 4 4 N 1.46503 * 109.47263 * 124.99549 * 3 2 1 5 5 C 1.34771 * 120.00134 * 179.97438 * 4 3 2 6 6 O 1.21286 * 119.99726 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.00194 * 180.02562 * 5 4 3 8 8 N 1.46898 * 109.47401 * 180.02562 * 7 5 4 9 9 C 1.47954 * 110.99809 * 190.00359 * 8 7 5 10 10 C 1.53937 * 86.17651 * 222.41311 * 9 8 7 11 11 C 1.53010 * 113.73529 * 138.07900 * 10 9 8 12 12 H 1.08997 * 109.46815 * 300.00658 * 11 10 9 13 13 C 1.53003 * 109.46752 * 59.99680 * 11 10 9 14 14 N 1.46496 * 109.47076 * 179.97438 * 11 10 9 15 15 C 1.34774 * 119.99544 * 155.00017 * 14 11 10 16 16 O 1.21279 * 120.00472 * 0.02562 * 15 14 11 17 17 C 1.50706 * 120.00020 * 180.02562 * 15 14 11 18 18 S 1.81002 * 109.47200 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99878 * 179.97438 * 18 17 15 20 20 H 1.08006 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00096 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99737 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99933 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47409 * 89.99815 * 23 21 19 25 25 H 1.48504 * 109.46732 * 209.99538 * 23 21 19 26 26 H 1.48503 * 109.47095 * 329.99265 * 23 21 19 27 27 C 1.47956 * 111.00087 * 90.63869 * 8 7 5 28 28 H 1.08001 * 119.99742 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.00258 * 0.02562 * 1 2 3 30 30 H 1.07995 * 120.00329 * 179.97438 * 2 1 3 31 31 H 1.08995 * 109.47073 * 4.99702 * 3 2 1 32 32 H 1.08996 * 109.46856 * 244.99478 * 3 2 1 33 33 H 0.97007 * 119.99813 * 0.02562 * 4 3 2 34 34 H 1.09004 * 109.46827 * 60.00166 * 7 5 4 35 35 H 1.09008 * 109.47045 * 300.00758 * 7 5 4 36 36 H 1.08999 * 113.76592 * 108.09930 * 9 8 7 37 37 H 1.08997 * 113.76130 * 336.72704 * 9 8 7 38 38 H 1.09001 * 113.73537 * 269.24901 * 10 9 8 39 39 H 1.08992 * 109.47534 * 300.00312 * 13 11 10 40 40 H 1.09005 * 109.46941 * 60.00853 * 13 11 10 41 41 H 1.08997 * 109.46755 * 180.02562 * 13 11 10 42 42 H 0.96994 * 120.00700 * 335.00136 * 14 11 10 43 43 H 1.09001 * 109.46953 * 299.99667 * 17 15 14 44 44 H 1.09000 * 109.47318 * 59.99264 * 17 15 14 45 45 H 0.97001 * 119.99701 * 180.02562 * 22 21 19 46 46 H 1.08999 * 113.76293 * 23.26968 * 27 8 7 47 47 H 1.09003 * 113.75654 * 251.89906 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3321 1.1315 5 6 3.7789 2.4088 1.3329 6 8 3.7150 3.3556 0.5777 7 6 4.7361 2.4362 2.4965 8 7 5.4705 3.7085 2.4966 9 6 6.5818 3.6791 3.4729 10 6 6.1508 5.1078 3.8509 11 6 6.1645 5.3770 5.3570 12 1 5.4808 4.6897 5.8552 13 6 7.5802 5.1703 5.8992 14 7 5.7416 6.7566 5.6103 15 6 5.1960 7.0868 6.7976 16 8 5.0555 6.2422 7.6565 17 6 4.7604 8.5059 7.0580 18 16 4.0724 8.6290 8.7277 19 6 3.6580 10.3412 8.7623 20 1 3.8536 10.9618 7.9002 21 6 3.0812 10.8929 9.8978 22 7 2.8432 10.1367 10.9487 23 14 2.6413 12.7079 9.9342 24 1 1.2521 12.8906 9.4423 25 1 2.7439 13.2142 11.3265 26 1 3.5781 13.4619 9.0630 27 6 4.7636 4.7287 3.3019 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 -0.0004 30 1 1.8500 -0.9352 0.0004 31 1 1.3585 2.1316 0.0895 32 1 2.6213 1.4026 -0.9313 33 1 3.0450 0.5746 1.7353 34 1 5.4409 1.6095 2.4067 35 1 4.1785 2.3388 3.4281 36 1 7.5688 3.6252 3.0136 37 1 6.4438 2.9525 4.2736 38 1 6.6549 5.8846 3.2760 39 1 7.8953 4.1441 5.7107 40 1 8.2640 5.8577 5.4010 41 1 7.5898 5.3617 6.9722 42 1 5.8542 7.4323 4.9236 43 1 5.6188 9.1717 6.9684 44 1 4.0010 8.7922 6.3304 45 1 2.4398 10.5222 11.7421 46 1 4.0939 4.3091 4.0525 47 1 4.2978 5.5134 2.7056 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717541969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:12 Heat of formation + Delta-G solvation = -47.597567 kcal Electronic energy + Delta-G solvation = -26181.548244 eV Core-core repulsion = 22298.015866 eV Total energy + Delta-G solvation = -3883.532379 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.65142 -40.64210 -39.90768 -36.79262 -36.26359 -34.58637 -33.82944 -32.93368 -31.14944 -29.82181 -27.75447 -27.64360 -26.93981 -25.57215 -23.18252 -21.72495 -21.55818 -20.77705 -20.68486 -19.73934 -18.16643 -17.83296 -17.74870 -17.32063 -16.88209 -16.77681 -16.41027 -16.36513 -15.96499 -15.91134 -15.50819 -14.90284 -14.78078 -14.60457 -14.45650 -14.22170 -14.04074 -13.80123 -13.71060 -13.36507 -13.20522 -13.16234 -12.89327 -12.80335 -12.75268 -12.57325 -12.08604 -11.87677 -11.83681 -11.70015 -11.64549 -11.14539 -11.05930 -10.87811 -10.53634 -10.27728 -10.15036 -10.05304 -9.71836 -8.66085 -8.34983 -6.12568 1.14503 1.27398 1.41942 1.46992 1.57720 1.64184 1.64688 2.23134 2.26551 2.31825 2.97491 2.99103 3.31148 3.42450 3.63044 3.79177 3.88425 3.98333 4.09397 4.14996 4.19365 4.27976 4.30466 4.31655 4.41969 4.46275 4.50429 4.52476 4.53627 4.72240 4.75994 4.81588 4.86270 4.97413 5.01519 5.21566 5.26183 5.36071 5.37156 5.41739 5.58759 5.61395 5.75364 5.92930 6.19644 6.54572 6.57153 7.06481 7.27925 7.28511 8.74198 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013234 B = 0.001824 C = 0.001676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.257746 B =15348.535879 C =16701.472156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.146 3.854 4 N -0.720 5.720 5 C 0.509 3.491 6 O -0.571 6.571 7 C 0.001 3.999 8 N -0.479 5.479 9 C 0.023 3.977 10 C -0.108 4.108 11 C 0.153 3.847 12 H 0.068 0.932 13 C -0.158 4.158 14 N -0.709 5.709 15 C 0.536 3.464 16 O -0.565 6.565 17 C -0.132 4.132 18 S -0.149 6.149 19 C -0.548 4.548 20 H 0.081 0.919 21 C 0.014 3.986 22 N -0.910 5.910 23 Si 0.998 3.002 24 H -0.268 1.268 25 H -0.277 1.277 26 H -0.259 1.259 27 C 0.008 3.992 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.134 0.866 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.416 0.584 34 H 0.132 0.868 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.032 0.968 42 H 0.414 0.586 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.271 0.729 46 H 0.068 0.932 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.088 -21.496 -22.954 31.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.023 3.977 4 N -0.374 5.374 5 C 0.295 3.705 6 O -0.449 6.449 7 C -0.131 4.131 8 N -0.202 5.202 9 C -0.105 4.105 10 C -0.127 4.127 11 C 0.049 3.951 12 H 0.086 0.914 13 C -0.216 4.216 14 N -0.362 5.362 15 C 0.322 3.678 16 O -0.443 6.443 17 C -0.283 4.283 18 S 0.078 5.922 19 C -0.696 4.696 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.183 1.183 27 C -0.121 4.121 28 H 0.139 0.861 29 H 0.113 0.887 30 H 0.152 0.848 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.253 0.747 34 H 0.150 0.850 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.109 0.891 38 H 0.134 0.866 39 H 0.108 0.892 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.251 0.749 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.882 -22.151 -22.637 32.046 hybrid contribution -0.667 1.739 0.141 1.868 sum 4.215 -20.412 -22.496 30.667 Atomic orbital electron populations 1.24180 0.95865 1.03129 0.96989 1.22958 0.96242 0.97459 1.03038 1.20359 0.91540 0.96397 0.89449 1.45935 1.40364 1.20082 1.31034 1.21065 0.80927 0.81925 0.86540 1.90701 1.68800 1.36974 1.48459 1.22694 0.97638 0.96511 0.96210 1.68360 1.06787 1.05092 1.39959 1.24058 0.97254 0.95045 0.94164 1.23178 0.96760 0.99669 0.93138 1.21045 0.96598 0.82549 0.94946 0.91424 1.22118 0.95534 1.03720 1.00212 1.45866 1.62821 1.12235 1.15324 1.19981 0.76405 0.89083 0.82306 1.90677 1.55948 1.51736 1.45929 1.23396 1.04987 0.97168 1.02747 1.85511 1.79412 1.13660 1.13579 1.23216 1.47629 0.94589 1.04128 0.90044 1.26112 0.94573 1.04406 0.94001 1.70180 1.41584 1.38250 1.04680 0.84966 0.78941 0.76224 0.77932 1.19363 1.20192 1.18271 1.24050 0.96334 0.96504 0.95224 0.86145 0.88684 0.84847 0.92811 0.91705 0.74676 0.84982 0.89206 0.87047 0.89135 0.86573 0.89228 0.90969 0.94878 0.74902 0.87376 0.87538 0.91988 0.91365 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 14.32 67.78 0.97 -0.28 16 2 C -0.18 -1.43 9.63 25.65 0.25 -1.18 16 3 C 0.15 1.96 6.11 85.63 0.52 2.48 16 4 N -0.72 -8.90 5.55 -466.79 -2.59 -11.49 16 5 C 0.51 9.53 7.87 87.66 0.69 10.22 16 6 O -0.57 -16.65 16.43 -3.05 -0.05 -16.70 16 7 C 0.00 0.01 5.28 85.56 0.45 0.46 16 8 N -0.48 -8.11 5.65 -912.53 -5.16 -13.27 16 9 C 0.02 0.26 6.57 86.41 0.57 0.83 16 10 C -0.11 -1.61 3.49 -10.14 -0.04 -1.65 16 11 C 0.15 3.10 2.42 45.00 0.11 3.21 16 12 H 0.07 1.68 7.37 -2.39 -0.02 1.66 16 13 C -0.16 -2.90 9.29 71.98 0.67 -2.23 16 14 N -0.71 -17.33 5.08 -442.52 -2.25 -19.58 16 15 C 0.54 19.48 7.81 87.66 0.68 20.17 16 16 O -0.56 -25.60 15.53 -3.02 -0.05 -25.65 16 17 C -0.13 -5.25 6.16 71.24 0.44 -4.81 16 18 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 19 C -0.55 -31.54 9.50 67.95 0.65 -30.89 16 20 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 21 C 0.01 0.79 5.49 84.86 0.47 1.26 16 22 N -0.91 -56.11 13.22 21.65 0.29 -55.83 16 23 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 27 C 0.01 0.15 7.51 86.41 0.65 0.79 16 28 H 0.12 0.53 8.06 -2.91 -0.02 0.51 16 29 H 0.09 0.83 7.84 -2.91 -0.02 0.80 16 30 H 0.13 0.59 8.06 -2.91 -0.02 0.57 16 31 H 0.05 0.90 7.79 -2.39 -0.02 0.89 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.42 2.36 8.46 -92.70 -0.78 1.57 16 34 H 0.13 0.90 8.08 -2.38 -0.02 0.88 16 35 H 0.09 0.91 7.38 -2.38 -0.02 0.89 16 36 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 0.78 7.85 -2.39 -0.02 0.76 16 38 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.16 7.43 -2.39 -0.02 1.15 16 40 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.41 7.62 8.60 -92.71 -0.80 6.83 16 43 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 44 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 45 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 46 H 0.07 1.33 7.29 -2.39 -0.02 1.31 16 47 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -85.27 409.81 -2.47 -87.74 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -0.61 Total: 19.88 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 7.08 Total: -1.60 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -9.71 Total: -100.16 kcal Atomic # 8 Polarization: -42.25 SS G_CDS: -0.10 Total: -42.34 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -85.27 -2.47 -87.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717541969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.143 kcal (2) G-P(sol) polarization free energy of solvation -85.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds