Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46976 * 2 1 4 4 C 1.50701 * 109.47008 * 119.99561 * 2 1 3 5 5 N 1.34774 * 119.99893 * 272.92079 * 4 2 1 6 6 O 1.21282 * 119.99801 * 92.92600 * 4 2 1 7 7 N 1.46898 * 109.47310 * 240.00015 * 2 1 3 8 8 C 1.46820 * 111.00021 * 176.61907 * 7 2 1 9 9 C 1.53021 * 109.78813 * 172.41063 * 8 7 2 10 10 C 1.53298 * 109.18055 * 60.98605 * 9 8 7 11 11 C 1.52725 * 108.88601 * 304.60575 * 10 9 8 12 12 C 1.53474 * 113.60265 * 282.40479 * 11 10 9 13 13 N 1.47668 * 85.96435 * 222.17964 * 12 11 10 14 14 C 1.34777 * 134.45209 * 204.28797 * 13 12 11 15 15 O 1.21290 * 119.99800 * 180.02562 * 14 13 12 16 16 C 1.50700 * 120.00106 * 359.97438 * 14 13 12 17 17 S 1.80998 * 109.46901 * 180.02562 * 16 14 13 18 18 C 1.76208 * 99.99643 * 180.02562 * 17 16 14 19 19 H 1.07993 * 120.00317 * 0.02562 * 18 17 16 20 20 C 1.38804 * 119.99763 * 179.97438 * 18 17 16 21 21 N 1.31629 * 119.99946 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99842 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46826 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47165 * 120.00079 * 22 20 18 25 25 H 1.48501 * 109.46911 * 239.99985 * 22 20 18 26 26 C 1.47669 * 91.09471 * 24.29010 * 13 12 11 27 27 C 1.47021 * 111.00220 * 52.45415 * 7 2 1 28 28 H 1.08997 * 109.47386 * 300.00330 * 1 2 3 29 29 H 1.09003 * 109.47001 * 60.00349 * 1 2 3 30 30 H 1.08998 * 109.46976 * 180.02562 * 1 2 3 31 31 H 0.96995 * 120.00439 * 359.97438 * 5 4 2 32 32 H 0.97004 * 119.99809 * 180.02562 * 5 4 2 33 33 H 1.09000 * 109.42049 * 292.51018 * 8 7 2 34 34 H 1.09003 * 109.41725 * 52.37855 * 8 7 2 35 35 H 1.08997 * 109.51746 * 180.89660 * 9 8 7 36 36 H 1.09001 * 109.51751 * 301.07498 * 9 8 7 37 37 H 1.09001 * 109.57022 * 64.43064 * 10 9 8 38 38 H 1.08995 * 109.56872 * 184.78194 * 10 9 8 39 39 H 1.09006 * 113.79358 * 336.44168 * 12 11 10 40 40 H 1.08996 * 113.79577 * 107.91744 * 12 11 10 41 41 H 1.08994 * 109.47432 * 299.99937 * 16 14 13 42 42 H 1.08997 * 109.46450 * 60.00402 * 16 14 13 43 43 H 0.97004 * 120.00038 * 179.97438 * 21 20 18 44 44 H 1.09002 * 113.79642 * 221.44363 * 26 13 12 45 45 H 1.09002 * 113.79721 * 89.97086 * 26 13 12 46 46 H 1.08994 * 109.50149 * 303.29456 * 27 7 2 47 47 H 1.09007 * 109.49866 * 63.41146 * 27 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 2.2008 -0.0283 2.3807 6 8 2.2850 -1.8957 1.1858 7 7 2.0197 -0.6925 -1.1994 8 6 3.4851 -0.6424 -1.2744 9 6 3.9756 -1.5266 -2.4229 10 6 3.3989 -1.0030 -3.7433 11 6 1.8775 -0.9378 -3.6269 12 6 1.1913 -2.3033 -3.7678 13 7 0.1954 -1.6001 -4.6010 14 6 -1.0925 -1.8278 -4.9267 15 8 -1.6795 -1.0556 -5.6549 16 6 -1.8028 -3.0424 -4.3870 17 16 -3.5054 -3.0678 -5.0005 18 6 -4.0838 -4.5465 -4.2365 19 1 -3.4220 -5.1245 -3.6086 20 6 -5.3904 -4.9680 -4.4408 21 7 -6.1972 -4.2632 -5.2057 22 14 -6.0034 -6.5360 -3.6314 23 1 -4.9090 -7.1394 -2.8293 24 1 -7.1513 -6.2190 -2.7443 25 1 -6.4370 -7.4963 -4.6779 26 6 1.1759 -0.5474 -4.9345 27 6 1.4068 -0.1378 -2.4152 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9992 0.9198 2.4164 32 1 2.5245 -0.4855 3.1727 33 1 3.8043 0.3855 -1.4466 34 1 3.9085 -1.0009 -0.3361 35 1 5.0644 -1.4988 -2.4646 36 1 3.6425 -2.5518 -2.2611 37 1 3.7928 -0.0067 -3.9441 38 1 3.6745 -1.6767 -4.5546 39 1 1.7822 -3.0381 -4.3148 40 1 0.7872 -2.6910 -2.8327 41 1 -1.2846 -3.9428 -4.7168 42 1 -1.8092 -3.0052 -3.2977 43 1 -7.1103 -4.5579 -5.3488 44 1 0.7596 0.4599 -4.9263 45 1 1.7622 -0.7598 -5.8285 46 1 0.3215 -0.2008 -2.3368 47 1 1.7041 0.9046 -2.5295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717626421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = -31.828521 kcal Electronic energy + Delta-G solvation = -28232.051865 eV Core-core repulsion = 24349.203283 eV Total energy + Delta-G solvation = -3882.848581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.16282 -39.93496 -38.23246 -36.75661 -34.33512 -33.70441 -32.38478 -31.03152 -30.19611 -29.09777 -26.33100 -26.20458 -25.46937 -25.11679 -23.26954 -21.91830 -20.26777 -19.28227 -18.62875 -17.76744 -17.58911 -17.21276 -16.48601 -16.07773 -15.73288 -15.46130 -15.35895 -14.76207 -14.71161 -14.44914 -14.33326 -13.97638 -13.85350 -13.66087 -13.48889 -13.05174 -12.69842 -12.60337 -12.45924 -12.24091 -12.11219 -11.96373 -11.84521 -11.70541 -11.28172 -11.03303 -10.97402 -10.92487 -10.71643 -10.58882 -10.48499 -10.05026 -9.99692 -9.75695 -9.24096 -9.03092 -8.60717 -8.46552 -8.17829 -6.45216 -6.17514 -3.87484 2.33575 2.86099 2.95378 3.16159 3.25057 3.29324 3.34885 3.53944 3.64656 4.14930 4.24929 4.38676 4.42887 4.59770 4.67582 4.74408 4.75432 4.85502 4.93298 5.08834 5.17758 5.21919 5.23828 5.29948 5.39059 5.40890 5.47878 5.50333 5.55375 5.62350 5.63926 5.65050 5.72814 5.80237 5.90556 5.97884 6.06124 6.13835 6.16570 6.24748 6.40566 6.62091 6.74469 7.01240 7.64953 7.95075 7.97857 8.40523 8.64814 9.28126 10.89997 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011737 B = 0.002939 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.971751 B = 9524.378385 C =10937.763695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 H 0.059 0.941 4 C 0.520 3.480 5 N -0.860 5.860 6 O -0.517 6.517 7 N -0.513 5.513 8 C 0.055 3.945 9 C -0.113 4.113 10 C -0.105 4.105 11 C -0.089 4.089 12 C 0.120 3.880 13 N -0.649 5.649 14 C 0.555 3.445 15 O -0.520 6.520 16 C -0.144 4.144 17 S -0.063 6.063 18 C -0.532 4.532 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.118 3.882 27 C 0.080 3.920 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.399 0.601 32 H 0.401 0.599 33 H 0.030 0.970 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.267 0.733 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.091 0.909 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.897 12.434 12.268 29.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.043 4.043 3 H 0.076 0.924 4 C 0.304 3.696 5 N -0.425 5.425 6 O -0.390 6.390 7 N -0.238 5.238 8 C -0.073 4.073 9 C -0.150 4.150 10 C -0.143 4.143 11 C -0.090 4.090 12 C -0.003 4.003 13 N -0.388 5.388 14 C 0.345 3.655 15 O -0.394 6.394 16 C -0.295 4.295 17 S 0.164 5.836 18 C -0.681 4.681 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.504 5.504 22 Si 0.744 3.256 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.005 4.005 27 C -0.048 4.048 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.227 0.773 32 H 0.232 0.768 33 H 0.049 0.951 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.110 0.890 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 22.575 12.271 10.862 27.896 hybrid contribution 0.562 -0.769 1.685 1.935 sum 23.137 11.502 12.547 28.723 Atomic orbital electron populations 1.21898 0.91297 1.04449 1.02990 1.21534 0.97725 0.95482 0.89587 0.92365 1.20491 0.76914 0.87585 0.84653 1.43924 1.71208 1.14079 1.13303 1.90778 1.48639 1.15097 1.84476 1.61630 1.06592 1.55179 1.00439 1.22116 0.87063 0.98053 1.00027 1.21548 0.99576 1.00604 0.93320 1.21518 0.93081 1.01664 0.98083 1.22073 0.95151 0.97102 0.94711 1.23135 0.87403 0.94604 0.95158 1.50073 1.09219 1.27901 1.51601 1.20024 0.79434 0.86498 0.79533 1.90703 1.64891 1.47663 1.36175 1.23461 1.04342 0.97443 1.04206 1.85352 0.99399 1.33871 1.64990 1.22913 1.00028 1.10142 1.34979 0.90874 1.24989 0.95639 0.97793 0.95172 1.70034 1.06578 1.38012 1.35762 0.86124 0.78737 0.81703 0.79002 1.19560 1.20579 1.20587 1.23059 0.87826 0.93564 0.96084 1.21887 1.00443 0.95170 0.87266 0.91546 0.90682 0.90418 0.77254 0.76771 0.95144 0.90643 0.91374 0.90443 0.91607 0.90923 0.90035 0.89129 0.89452 0.89336 0.92299 0.90301 0.89834 0.89048 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.69 37.16 0.32 -0.94 16 2 C 0.07 0.56 2.47 -68.87 -0.17 0.39 16 3 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 4 C 0.52 4.82 6.20 -10.99 -0.07 4.76 16 5 N -0.86 -4.41 8.87 31.22 0.28 -4.13 16 6 O -0.52 -7.20 16.68 5.56 0.09 -7.11 16 7 N -0.51 -4.85 4.23 -228.23 -0.96 -5.81 16 8 C 0.06 0.46 5.15 -3.86 -0.02 0.44 16 9 C -0.11 -0.85 6.04 -26.57 -0.16 -1.01 16 10 C -0.11 -0.75 5.18 -26.72 -0.14 -0.89 16 11 C -0.09 -0.83 0.86 -154.46 -0.13 -0.96 16 12 C 0.12 1.39 7.62 -3.16 -0.02 1.36 16 13 N -0.65 -9.66 3.45 -180.45 -0.62 -10.29 16 14 C 0.56 11.19 8.07 -10.99 -0.09 11.10 16 15 O -0.52 -12.48 16.59 5.55 0.09 -12.39 16 16 C -0.14 -3.12 5.90 36.01 0.21 -2.91 16 17 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 18 C -0.53 -15.57 9.50 30.94 0.29 -15.28 16 19 H 0.07 2.05 7.80 -52.49 -0.41 1.64 16 20 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.61 13.22 55.49 0.73 -25.87 16 22 Si 0.92 21.89 29.55 -169.99 -5.02 16.87 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.12 1.32 7.97 -3.18 -0.03 1.30 16 27 C 0.08 0.74 4.07 -3.95 -0.02 0.73 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.64 6.25 -51.93 -0.32 0.32 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.40 0.86 8.83 -40.82 -0.36 0.50 16 32 H 0.40 1.77 8.93 -40.82 -0.36 1.41 16 33 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.08 0.71 6.48 -51.93 -0.34 0.38 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.48 8.04 -51.93 -0.42 0.06 16 39 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 40 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 41 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 42 H 0.09 1.81 8.14 -51.92 -0.42 1.39 16 43 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 45 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 46 H 0.09 1.02 5.87 -51.93 -0.31 0.72 16 47 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 391.92 15.07 5.91 5.91 Total: -1.00 -38.11 391.92 -9.39 -47.49 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.56 Total: -0.82 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -0.11 Total: 0.11 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.58 Total: -46.10 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: 0.18 Total: -19.49 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -38.11 -9.39 -47.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717626421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.666 kcal (2) G-P(sol) polarization free energy of solvation -38.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds