Wall clock time and date at job start Sat Apr 11 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 120.00125 * 2 1 4 4 N 1.46503 * 109.47057 * 125.00138 * 3 2 1 5 5 C 1.34775 * 120.00225 * 179.97438 * 4 3 2 6 6 O 1.21279 * 119.99812 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00054 * 179.72714 * 5 4 3 8 8 H 1.09006 * 109.46921 * 300.27626 * 7 5 4 9 9 C 1.52997 * 109.47207 * 60.27866 * 7 5 4 10 10 N 1.46900 * 109.47359 * 180.28065 * 7 5 4 11 11 C 1.47474 * 111.00304 * 77.16572 * 10 7 5 12 12 C 1.53505 * 87.93437 * 138.70650 * 11 10 7 13 13 C 1.47473 * 111.00473 * 173.14276 * 10 7 5 14 14 H 1.09002 * 113.47394 * 336.05675 * 13 10 7 15 15 C 1.52996 * 113.47978 * 106.52415 * 13 10 7 16 16 N 1.46501 * 109.47274 * 184.37875 * 15 13 10 17 17 C 1.34775 * 120.00167 * 175.07719 * 16 15 13 18 18 O 1.21279 * 119.99984 * 0.02562 * 17 16 15 19 19 C 1.50702 * 119.99837 * 179.97438 * 17 16 15 20 20 S 1.81009 * 109.46908 * 180.02562 * 19 17 16 21 21 C 1.76197 * 99.99886 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99972 * 359.97438 * 21 20 19 23 23 C 1.38799 * 119.99804 * 179.97438 * 21 20 19 24 24 N 1.31626 * 119.99729 * 179.97438 * 23 21 20 25 25 Si 1.86795 * 119.99920 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47427 * 89.99772 * 25 23 21 27 27 H 1.48513 * 109.46804 * 209.99544 * 25 23 21 28 28 H 1.48500 * 109.47207 * 329.99230 * 25 23 21 29 29 H 1.07999 * 119.99830 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00196 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.99830 * 180.02562 * 2 1 3 32 32 H 1.09010 * 109.47482 * 5.00913 * 3 2 1 33 33 H 1.08994 * 109.47782 * 245.00252 * 3 2 1 34 34 H 0.97002 * 119.99591 * 0.02562 * 4 3 2 35 35 H 1.09001 * 109.46692 * 305.36292 * 9 7 5 36 36 H 1.08998 * 109.46970 * 65.35793 * 9 7 5 37 37 H 1.09001 * 109.47214 * 185.36701 * 9 7 5 38 38 H 1.09000 * 113.48190 * 253.47804 * 11 10 7 39 39 H 1.09004 * 113.47762 * 23.93679 * 11 10 7 40 40 H 1.09005 * 114.17570 * 220.32996 * 12 11 10 41 41 H 1.09001 * 114.34659 * 87.63798 * 12 11 10 42 42 H 1.08995 * 109.47405 * 304.37580 * 15 13 10 43 43 H 1.08999 * 109.47192 * 64.37918 * 15 13 10 44 44 H 0.97001 * 119.99677 * 355.07870 * 16 15 13 45 45 H 1.09001 * 109.47405 * 300.00079 * 19 17 16 46 46 H 1.08995 * 109.47294 * 60.00658 * 19 17 16 47 47 H 0.97005 * 120.00290 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 3.7791 2.4084 1.3329 6 8 3.7153 3.3553 0.5778 7 6 4.7316 2.4384 2.5003 8 1 4.1706 2.3394 3.4297 9 6 5.7246 1.2809 2.3782 10 7 5.4627 3.7126 2.5032 11 6 4.6180 4.8055 3.0196 12 6 5.8454 5.3172 3.7865 13 6 6.2845 3.8477 3.7203 14 1 5.9238 3.2487 4.5565 15 6 7.7829 3.6701 3.4669 16 7 8.5027 3.7169 4.7420 17 6 9.8295 3.4829 4.7759 18 8 10.4277 3.2339 3.7507 19 6 10.5700 3.5316 6.0875 20 16 12.3225 3.1778 5.8045 21 6 12.9290 3.2967 7.4545 22 1 12.2522 3.5304 8.2631 23 6 14.2765 3.0901 7.7151 24 7 14.7297 3.1795 8.9477 25 14 15.4472 2.6868 6.3164 26 1 16.0031 3.9453 5.7576 27 1 16.5552 1.8400 6.8270 28 1 14.7140 1.9542 5.2529 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0897 33 1 2.6213 1.4026 -0.9313 34 1 3.0451 0.5742 1.7351 35 1 5.1786 0.3426 2.2803 36 1 6.3506 1.4305 1.4985 37 1 6.3520 1.2449 3.2689 38 1 4.2730 5.4908 2.2453 39 1 3.8125 4.4622 3.6688 40 1 5.6264 5.6727 4.7934 41 1 6.4787 5.9983 3.2179 42 1 7.9585 2.7079 2.9858 43 1 8.1393 4.4708 2.8189 44 1 8.0243 3.9163 5.5620 45 1 10.4664 4.5239 6.5267 46 1 10.1542 2.7881 6.7674 47 1 15.6715 3.0355 9.1298 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733202733.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:22 Heat of formation + Delta-G solvation = -42.759423 kcal Electronic energy + Delta-G solvation = -26475.657586 eV Core-core repulsion = 22592.335005 eV Total energy + Delta-G solvation = -3883.322581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.95856 -40.61904 -39.99991 -36.78166 -35.74779 -34.65474 -34.51911 -33.19014 -31.63499 -29.03408 -28.13212 -27.81305 -27.29407 -24.45693 -23.93725 -21.89262 -21.56790 -20.82371 -20.65768 -19.85379 -18.32601 -17.97088 -17.57691 -17.38917 -17.05133 -16.78402 -16.65062 -16.43701 -15.85436 -15.59350 -15.42726 -15.10765 -14.90277 -14.83524 -14.66799 -14.42888 -14.12559 -13.62561 -13.49817 -13.41450 -13.32936 -13.13190 -13.06663 -13.00004 -12.81306 -12.62488 -12.15037 -12.08088 -11.95109 -11.85406 -11.50709 -11.15669 -11.05313 -10.94218 -10.53245 -10.50441 -10.11972 -10.06440 -9.87873 -8.97473 -8.50048 -6.20345 1.00650 1.14215 1.32657 1.48146 1.56468 1.57607 1.59957 2.07120 2.26124 2.33960 2.72918 2.88513 3.03045 3.44336 3.57497 3.77460 3.84726 3.89805 3.93497 4.01103 4.09584 4.13091 4.19409 4.27036 4.31182 4.50827 4.53344 4.65251 4.67153 4.70769 4.74275 4.82835 4.84811 4.98241 4.99604 5.15102 5.21247 5.26417 5.32944 5.43202 5.62612 5.72443 5.74990 5.97754 6.13235 6.50531 6.52131 6.95663 7.21719 7.23497 8.62189 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024919 B = 0.001724 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.366557 B =16233.213130 C =16768.346848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.182 4.182 3 C 0.147 3.853 4 N -0.716 5.716 5 C 0.517 3.483 6 O -0.568 6.568 7 C 0.032 3.968 8 H 0.104 0.896 9 C -0.142 4.142 10 N -0.469 5.469 11 C 0.007 3.993 12 C -0.134 4.134 13 C 0.029 3.971 14 H 0.114 0.886 15 C 0.141 3.859 16 N -0.706 5.706 17 C 0.535 3.465 18 O -0.566 6.566 19 C -0.109 4.109 20 S -0.180 6.180 21 C -0.527 4.527 22 H 0.064 0.936 23 C 0.047 3.953 24 N -0.917 5.917 25 Si 0.912 3.088 26 H -0.264 1.264 27 H -0.259 1.259 28 H -0.237 1.237 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.129 0.871 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.415 0.585 35 H 0.089 0.911 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.419 0.581 45 H 0.115 0.885 46 H 0.117 0.883 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.134 -5.144 -11.953 35.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.200 4.200 3 C 0.024 3.976 4 N -0.370 5.370 5 C 0.303 3.697 6 O -0.446 6.446 7 C -0.080 4.080 8 H 0.121 0.879 9 C -0.200 4.200 10 N -0.193 5.193 11 C -0.121 4.121 12 C -0.171 4.171 13 C -0.080 4.080 14 H 0.131 0.869 15 C 0.017 3.983 16 N -0.360 5.360 17 C 0.321 3.679 18 O -0.444 6.444 19 C -0.260 4.260 20 S 0.046 5.954 21 C -0.675 4.675 22 H 0.082 0.918 23 C -0.158 4.158 24 N -0.555 5.555 25 Si 0.735 3.265 26 H -0.189 1.189 27 H -0.184 1.184 28 H -0.161 1.161 29 H 0.118 0.882 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.253 0.747 35 H 0.108 0.892 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.256 0.744 45 H 0.133 0.867 46 H 0.135 0.865 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -31.805 -4.884 -14.768 35.404 hybrid contribution -0.370 -0.131 2.113 2.149 sum -32.175 -5.016 -12.655 34.936 Atomic orbital electron populations 1.24174 0.95651 1.03243 0.96647 1.22939 0.96370 0.97365 1.03346 1.20373 0.91461 0.96593 0.89186 1.45913 1.40195 1.19880 1.31015 1.20792 0.80490 0.82118 0.86322 1.90704 1.68568 1.37063 1.48227 1.22319 0.95186 0.93730 0.96803 0.87851 1.21840 0.98751 0.96205 1.03212 1.68816 1.13901 1.02744 1.33793 1.23685 0.96077 0.94259 0.98089 1.23261 0.96674 0.94895 1.02294 1.23614 0.92341 0.98615 0.93438 0.86860 1.21122 0.90461 1.01782 0.84935 1.45551 1.06805 1.72039 1.11624 1.19968 0.82764 0.75720 0.89492 1.90705 1.68328 1.49070 1.36292 1.23262 0.96684 1.07362 0.98707 1.84786 1.04696 1.93173 1.12731 1.22465 0.97598 1.55067 0.92380 0.91763 1.25524 0.98957 0.93456 0.97888 1.70012 1.16309 1.48623 1.20516 0.85893 0.79972 0.80161 0.80509 1.18859 1.18363 1.16135 0.88240 0.86258 0.85322 0.92048 0.92144 0.74750 0.89177 0.93215 0.90684 0.90977 0.89529 0.87612 0.89711 0.92253 0.92732 0.74402 0.86683 0.86456 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 14.32 67.78 0.97 0.13 16 2 C -0.18 -1.20 9.63 25.64 0.25 -0.95 16 3 C 0.15 1.73 6.11 85.63 0.52 2.25 16 4 N -0.72 -7.99 5.41 -466.79 -2.53 -10.52 16 5 C 0.52 9.15 7.02 87.66 0.62 9.76 16 6 O -0.57 -15.54 15.93 -3.03 -0.05 -15.59 16 7 C 0.03 0.42 2.08 44.17 0.09 0.51 16 8 H 0.10 0.78 7.56 -2.38 -0.02 0.76 16 9 C -0.14 -1.74 8.50 71.98 0.61 -1.13 16 10 N -0.47 -8.20 5.53 -881.39 -4.88 -13.07 16 11 C 0.01 0.11 6.92 83.57 0.58 0.69 16 12 C -0.13 -1.67 8.00 30.94 0.25 -1.42 16 13 C 0.03 0.40 2.22 42.18 0.09 0.50 16 14 H 0.11 0.96 7.82 -2.39 -0.02 0.94 16 15 C 0.14 2.99 5.65 86.38 0.49 3.48 16 16 N -0.71 -15.29 5.55 -463.07 -2.57 -17.86 16 17 C 0.54 17.79 7.85 87.66 0.69 18.48 16 18 O -0.57 -24.27 15.86 -3.03 -0.05 -24.32 16 19 C -0.11 -3.94 6.16 71.24 0.44 -3.50 16 20 S -0.18 -9.03 18.55 -56.49 -1.05 -10.08 16 21 C -0.53 -30.37 10.04 67.95 0.68 -29.69 16 22 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 23 C 0.05 2.75 5.50 84.86 0.47 3.22 16 24 N -0.92 -55.42 13.97 21.65 0.30 -55.12 16 25 Si 0.91 44.94 27.74 68.60 1.90 46.85 16 26 H -0.26 -12.74 7.11 99.48 0.71 -12.04 16 27 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 28 H -0.24 -11.70 6.74 99.48 0.67 -11.03 16 29 H 0.10 0.54 7.84 -2.91 -0.02 0.51 16 30 H 0.12 0.29 8.06 -2.91 -0.02 0.27 16 31 H 0.13 0.53 8.06 -2.91 -0.02 0.51 16 32 H 0.06 0.84 7.79 -2.38 -0.02 0.82 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.42 2.08 7.83 -92.71 -0.73 1.35 16 35 H 0.09 0.62 7.43 -2.39 -0.02 0.60 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.90 6.93 -2.39 -0.02 0.88 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 0.89 7.65 -2.38 -0.02 0.87 16 40 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.08 1.34 7.94 -2.39 -0.02 1.32 16 42 H 0.06 1.45 6.98 -2.39 -0.02 1.44 16 43 H 0.05 1.40 7.89 -2.39 -0.02 1.38 16 44 H 0.42 5.85 8.48 -92.71 -0.79 5.06 16 45 H 0.11 3.77 8.14 -2.39 -0.02 3.76 16 46 H 0.12 3.79 8.14 -2.40 -0.02 3.77 16 47 H 0.28 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -82.32 402.94 -2.74 -85.05 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -0.57 Total: 12.34 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.74 Total: 2.31 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -9.67 Total: -96.57 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -0.10 Total: -39.91 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.90 Total: 46.85 kcal Atomic # 16 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Total: -82.32 -2.74 -85.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733202733.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.295 kcal (2) G-P(sol) polarization free energy of solvation -82.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds