Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47673 * 2 1 4 4 N 1.46496 * 109.47500 * 239.99026 * 2 1 3 5 5 C 1.34776 * 120.00023 * 85.00552 * 4 2 1 6 6 O 1.21280 * 119.99654 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00067 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.47208 * 180.02562 * 7 5 4 9 9 C 1.76188 * 100.00345 * 179.97438 * 8 7 5 10 10 H 1.08008 * 120.00084 * 359.97438 * 9 8 7 11 11 C 1.38797 * 120.00395 * 180.02562 * 9 8 7 12 12 N 1.31632 * 120.00046 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 120.00236 * 179.97438 * 11 9 8 14 14 H 1.48495 * 109.46941 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47062 * 119.99964 * 13 11 9 16 16 H 1.48502 * 109.46806 * 239.99649 * 13 11 9 17 17 C 1.53010 * 109.46844 * 119.99338 * 2 1 3 18 18 C 1.53935 * 113.73373 * 281.87373 * 17 2 1 19 19 N 1.48180 * 86.10289 * 221.95507 * 18 17 2 20 20 C 1.46902 * 111.07265 * 137.51689 * 19 18 17 21 21 C 1.50698 * 109.46685 * 90.56575 * 20 19 18 22 22 O 1.21285 * 120.00649 * 0.02562 * 21 20 19 23 23 N 1.34782 * 119.99814 * 179.97438 * 21 20 19 24 24 C 1.47063 * 136.05941 * 359.63922 * 23 21 20 25 25 C 1.53236 * 88.08224 * 207.19895 * 24 23 21 26 26 C 1.47065 * 136.05428 * 180.02562 * 23 21 20 27 27 C 1.47959 * 90.79907 * 24.59880 * 19 18 17 28 28 H 1.09001 * 109.46531 * 60.09472 * 1 2 3 29 29 H 1.08997 * 109.47192 * 180.08871 * 1 2 3 30 30 H 1.09000 * 109.47266 * 300.09595 * 1 2 3 31 31 H 0.97003 * 119.99977 * 265.00500 * 4 2 1 32 32 H 1.08998 * 109.47176 * 299.99652 * 7 5 4 33 33 H 1.09000 * 109.47215 * 59.99788 * 7 5 4 34 34 H 0.96991 * 120.00396 * 180.02562 * 12 11 9 35 35 H 1.09002 * 112.93761 * 53.43982 * 17 2 1 36 36 H 1.09003 * 113.75932 * 336.23937 * 18 17 2 37 37 H 1.09005 * 113.75841 * 107.59646 * 18 17 2 38 38 H 1.08998 * 109.47438 * 210.56674 * 20 19 18 39 39 H 1.08995 * 109.47220 * 330.57309 * 20 19 18 40 40 H 1.08996 * 113.46592 * 321.93203 * 24 23 21 41 41 H 1.09000 * 113.47033 * 92.37013 * 24 23 21 42 42 H 1.09003 * 114.32489 * 220.46488 * 25 24 23 43 43 H 1.08994 * 114.20111 * 87.72960 * 25 24 23 44 44 H 1.08999 * 113.47035 * 267.62668 * 26 23 21 45 45 H 1.08996 * 113.47255 * 38.07038 * 26 23 21 46 46 H 1.08996 * 113.76355 * 221.08028 * 27 19 18 47 47 H 1.09001 * 113.86085 * 89.73246 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6908 -1.1960 5 6 2.1473 -0.0186 -2.3570 6 8 1.8584 1.1580 -2.4117 7 6 2.6491 -0.7293 -3.5875 8 16 2.7111 0.4337 -4.9730 9 6 3.3142 -0.6316 -6.2401 10 1 3.5234 -1.6681 -6.0200 11 6 3.5215 -0.1386 -7.5209 12 7 3.2670 1.1247 -7.7891 13 14 4.1616 -1.2680 -8.8642 14 1 4.3674 -2.6299 -8.3094 15 1 3.1747 -1.3282 -9.9723 16 1 5.4521 -0.7433 -9.3787 17 6 2.0400 -0.7212 1.2494 18 6 1.9731 0.1329 2.5284 19 7 3.3107 -0.4200 2.8463 20 6 4.2036 0.6240 3.3666 21 6 4.0859 0.6832 4.8678 22 8 3.3327 -0.0703 5.4473 23 7 4.8185 1.5730 5.5666 24 6 5.8110 2.6103 5.2478 25 6 6.4026 2.4011 6.6458 26 6 4.9820 1.9290 6.9841 27 6 3.5699 -0.6728 1.4117 28 1 -0.3632 0.5124 -0.8909 29 1 -0.3633 -1.0276 0.0016 30 1 -0.3634 0.5153 0.8891 31 1 2.2491 -1.6320 -1.1523 32 1 3.6482 -1.1218 -3.3982 33 1 1.9762 -1.5511 -3.8323 34 1 3.4115 1.4691 -8.6843 35 1 1.6178 -1.7193 1.3658 36 1 1.9750 1.2065 2.3402 37 1 1.1922 -0.1769 3.2230 38 1 5.2326 0.3922 3.0916 39 1 3.9223 1.5876 2.9418 40 1 6.4907 2.3282 4.4437 41 1 5.3749 3.5989 5.1044 42 1 6.7001 3.3208 7.1496 43 1 7.1582 1.6174 6.6985 44 1 4.3227 2.7342 7.3083 45 1 4.9584 1.0690 7.6532 46 1 4.0627 -1.6250 1.2156 47 1 4.0402 0.1636 0.8945 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734108177.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = 6.268619 kcal Electronic energy + Delta-G solvation = -26561.419251 eV Core-core repulsion = 22680.222686 eV Total energy + Delta-G solvation = -3881.196565 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.99201 -40.27761 -38.99308 -37.85141 -35.15754 -32.44151 -32.01238 -30.94437 -29.47262 -28.48690 -26.61755 -26.34255 -25.51319 -25.32373 -22.80298 -21.70976 -20.40683 -19.87131 -19.33928 -17.86353 -17.51850 -16.82950 -16.73430 -16.43422 -16.00364 -15.78798 -15.32491 -14.93871 -14.81599 -14.58356 -14.13459 -13.96592 -13.57128 -13.28917 -13.21190 -13.14801 -13.05499 -12.94798 -12.69993 -12.63931 -12.20783 -12.02968 -11.93654 -11.65977 -11.29204 -11.23666 -11.08427 -11.03733 -11.00878 -10.85869 -10.75345 -10.07740 -9.81409 -9.40132 -9.17483 -9.14546 -9.08596 -8.84470 -8.24314 -6.51134 -6.23107 -3.93453 2.26454 2.38122 3.00516 3.09146 3.20554 3.27042 3.31543 3.52026 3.65907 3.79424 4.05439 4.19253 4.20931 4.38396 4.43091 4.61098 4.68891 4.84242 4.86744 4.88775 4.91518 4.98737 5.09735 5.10682 5.12251 5.16163 5.18547 5.20586 5.32806 5.36119 5.44818 5.51901 5.57961 5.59145 5.70189 5.84564 5.88592 5.91299 6.05061 6.13808 6.23097 6.57040 6.67561 7.30276 7.58854 7.72783 7.87658 8.34304 8.61919 9.22553 10.84381 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.001810 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.585547 B =15466.141531 C =16243.299900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.153 3.847 3 H 0.086 0.914 4 N -0.733 5.733 5 C 0.533 3.467 6 O -0.519 6.519 7 C -0.154 4.154 8 S -0.061 6.061 9 C -0.535 4.535 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.868 5.868 13 Si 0.918 3.082 14 H -0.272 1.272 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.121 4.121 18 C 0.017 3.983 19 N -0.460 5.460 20 C 0.007 3.993 21 C 0.545 3.455 22 O -0.518 6.518 23 N -0.657 5.657 24 C 0.098 3.902 25 C -0.156 4.156 26 C 0.104 3.896 27 C 0.009 3.991 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.398 0.602 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.268 0.732 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.138 0.511 28.413 28.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.047 3.953 3 H 0.104 0.896 4 N -0.387 5.387 5 C 0.320 3.680 6 O -0.393 6.393 7 C -0.304 4.304 8 S 0.165 5.835 9 C -0.683 4.683 10 H 0.091 0.909 11 C -0.136 4.136 12 N -0.503 5.503 13 Si 0.745 3.255 14 H -0.196 1.196 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.141 4.141 18 C -0.112 4.112 19 N -0.183 5.183 20 C -0.124 4.124 21 C 0.334 3.666 22 O -0.391 6.391 23 N -0.395 5.395 24 C -0.026 4.026 25 C -0.194 4.194 26 C -0.019 4.019 27 C -0.119 4.119 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.232 0.768 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.120 0.880 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.095 0.905 46 H 0.112 0.888 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.172 1.514 28.848 29.062 hybrid contribution 0.898 -1.678 -1.338 2.327 sum 4.071 -0.164 27.510 27.810 Atomic orbital electron populations 1.22156 0.95138 1.02212 1.02609 1.20892 0.94291 0.96967 0.83129 0.89636 1.46042 1.69283 1.13961 1.09388 1.20300 0.76781 0.87208 0.83749 1.90694 1.48407 1.15830 1.84403 1.23535 1.03662 1.04850 0.98385 1.85380 1.86331 1.12897 0.98850 1.22913 1.50799 0.98195 0.96401 0.90875 1.24994 0.95112 0.95536 0.97964 1.70024 1.45642 1.13213 1.21436 0.86119 0.78518 0.80148 0.80727 1.19609 1.20556 1.20580 1.23286 0.95898 1.00996 0.93907 1.24059 0.93376 0.97906 0.95872 1.68427 1.01988 1.32039 1.15801 1.22517 1.00733 0.96776 0.92411 1.20140 0.78450 0.79048 0.88968 1.90719 1.36788 1.40562 1.71075 1.49764 1.44049 1.35934 1.09785 1.22967 0.89218 0.91847 0.98537 1.23337 0.96650 1.02873 0.96527 1.22904 0.94993 0.99914 0.84085 1.24015 0.96698 1.02944 0.88254 0.91618 0.92408 0.91911 0.76824 0.89275 0.89239 0.92244 0.87514 0.90928 0.88688 0.87986 0.90794 0.90260 0.89514 0.89053 0.88704 0.89856 0.90461 0.88755 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.44 37.16 0.35 -1.42 16 2 C 0.15 1.69 2.29 -67.93 -0.16 1.54 16 3 H 0.09 1.11 7.48 -51.93 -0.39 0.72 16 4 N -0.73 -9.22 4.94 -53.81 -0.27 -9.49 16 5 C 0.53 9.56 7.81 -10.99 -0.09 9.47 16 6 O -0.52 -11.38 15.53 5.56 0.09 -11.30 16 7 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 8 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 9 C -0.53 -15.13 9.50 30.94 0.29 -14.84 16 10 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 11 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 12 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 13 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 14 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C -0.12 -1.08 3.35 -89.68 -0.30 -1.38 16 18 C 0.02 0.16 7.42 -2.64 -0.02 0.14 16 19 N -0.46 -4.71 5.65 -239.54 -1.35 -6.06 16 20 C 0.01 0.06 5.11 -4.98 -0.03 0.04 16 21 C 0.54 5.98 8.12 -10.98 -0.09 5.89 16 22 O -0.52 -7.87 17.21 5.55 0.10 -7.77 16 23 N -0.66 -5.21 3.69 -185.47 -0.68 -5.89 16 24 C 0.10 0.40 8.40 -8.65 -0.07 0.33 16 25 C -0.16 -0.49 8.48 -26.36 -0.22 -0.71 16 26 C 0.10 0.59 8.61 -8.52 -0.07 0.52 16 27 C 0.01 0.08 7.38 -2.76 -0.02 0.06 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 31 H 0.40 3.95 8.60 -40.82 -0.35 3.60 16 32 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 33 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.63 7.38 -51.93 -0.38 0.25 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.07 0.56 7.39 -51.93 -0.38 0.18 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 43 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.08 0.70 7.88 -51.93 -0.41 0.29 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -37.65 406.11 -10.59 -48.24 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -7.80 Total: 0.20 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: -0.30 Total: -1.18 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: -1.57 Total: -46.73 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: 0.18 Total: -19.07 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -37.65 -10.59 -48.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734108177.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.509 kcal (2) G-P(sol) polarization free energy of solvation -37.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds