Wall clock time and date at job start Sat Apr 11 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 120.00068 * 2 1 4 4 O 1.21277 * 120.00166 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99776 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47185 * 300.00129 * 5 3 2 7 7 C 1.53001 * 109.47030 * 60.00317 * 5 3 2 8 8 N 1.46897 * 109.46982 * 180.02562 * 5 3 2 9 9 C 1.48567 * 110.99774 * 175.00238 * 8 5 3 10 10 C 1.54379 * 104.58954 * 200.95985 * 9 8 5 11 11 H 1.09002 * 117.60496 * 242.74685 * 10 9 8 12 12 C 1.53001 * 118.12885 * 87.23064 * 10 9 8 13 13 H 1.08996 * 117.44466 * 15.93430 * 12 10 9 14 14 C 1.52997 * 117.44357 * 160.68022 * 12 10 9 15 15 N 1.46506 * 109.47289 * 185.16248 * 14 12 10 16 16 C 1.34774 * 120.00072 * 180.02562 * 15 14 12 17 17 O 1.21284 * 120.00066 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99838 * 180.02562 * 16 15 14 19 19 S 1.80997 * 109.47407 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00268 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00294 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99650 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00589 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99648 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47366 * 89.99998 * 24 22 20 26 26 H 1.48504 * 109.47094 * 209.99633 * 24 22 20 27 27 H 1.48498 * 109.47221 * 329.99555 * 24 22 20 28 28 C 1.52999 * 60.48623 * 268.30760 * 12 10 9 29 29 H 1.09006 * 119.52376 * 248.28227 * 28 12 10 30 30 C 1.48554 * 111.00014 * 59.58329 * 8 5 3 31 31 H 1.09001 * 109.47403 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46930 * 300.00130 * 1 2 3 33 33 H 1.09004 * 109.47189 * 59.99381 * 1 2 3 34 34 H 0.97004 * 119.99655 * 180.02562 * 2 1 3 35 35 H 1.09000 * 109.46961 * 180.02562 * 7 5 3 36 36 H 1.09001 * 109.47245 * 300.00006 * 7 5 3 37 37 H 1.08999 * 109.47289 * 59.99877 * 7 5 3 38 38 H 1.08996 * 110.40862 * 82.17971 * 9 8 5 39 39 H 1.08999 * 110.40977 * 319.73795 * 9 8 5 40 40 H 1.09001 * 109.47289 * 65.16119 * 14 12 10 41 41 H 1.09004 * 109.47261 * 305.16375 * 14 12 10 42 42 H 0.97001 * 119.99251 * 0.02562 * 15 14 12 43 43 H 1.09004 * 109.47043 * 299.99952 * 18 16 15 44 44 H 1.09001 * 109.47324 * 59.99585 * 18 16 15 45 45 H 0.96997 * 120.00713 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.41225 * 277.81748 * 30 8 5 47 47 H 1.08997 * 110.41321 * 40.13972 * 30 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1671 0.0006 6 1 4.0089 0.6535 0.8908 7 6 4.1564 0.4456 -1.2484 8 7 4.1356 2.5521 0.0011 9 6 5.6158 2.5933 0.1225 10 6 5.9238 4.0136 0.6434 11 1 6.5153 4.6688 0.0040 12 6 5.9123 4.2455 2.1557 13 1 5.9528 3.3666 2.7990 14 6 6.6391 5.4835 2.6848 15 7 6.6248 5.4694 4.1497 16 6 7.2100 6.4689 4.8389 17 8 7.7480 7.3802 4.2465 18 6 7.1957 6.4541 6.3458 19 16 8.0541 7.9194 6.9717 20 6 7.8902 7.6527 8.7057 21 1 7.3738 6.7774 9.0710 22 6 8.4238 8.5683 9.6021 23 7 9.0527 9.6355 9.1569 24 14 8.2506 8.2852 11.4404 25 1 9.4123 7.5018 11.9323 26 1 8.2041 9.5940 12.1406 27 1 6.9978 7.5349 11.7099 28 6 4.6319 4.4705 1.3489 29 1 4.2412 5.4814 1.2322 30 6 3.6506 3.2878 1.1971 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.9500 -0.8401 -0.0004 35 1 5.2464 0.4452 -1.2477 36 1 3.7930 -0.5820 -1.2483 37 1 3.7934 0.9593 -2.1386 38 1 6.0814 2.4358 -0.8503 39 1 5.9597 1.8440 0.8354 40 1 6.1365 6.3813 2.3251 41 1 7.6703 5.4781 2.3314 42 1 6.1942 4.7407 4.6234 43 1 6.1646 6.4587 6.6994 44 1 7.6990 5.5565 6.7051 45 1 9.4259 10.2751 9.7834 46 1 2.6368 3.6532 1.0334 47 1 3.6851 2.6465 2.0777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734153878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:34 Heat of formation + Delta-G solvation = -29.687724 kcal Electronic energy + Delta-G solvation = -26297.042174 eV Core-core repulsion = 22414.286425 eV Total energy + Delta-G solvation = -3882.755749 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.01891 -39.71700 -38.91176 -35.97834 -35.11961 -34.04280 -32.41685 -31.36899 -29.56083 -28.87525 -27.33473 -26.66539 -25.45062 -24.33169 -22.30535 -21.03233 -20.66616 -20.40091 -20.07522 -17.88781 -17.70768 -17.06618 -16.43776 -16.12450 -16.00097 -15.48278 -15.29569 -14.94689 -14.79320 -14.55990 -14.44734 -13.95224 -13.82328 -13.42939 -13.28670 -13.18013 -13.00613 -12.86908 -12.83284 -12.57995 -12.53865 -12.35556 -11.89003 -11.79285 -11.57739 -11.40314 -11.05484 -11.01275 -10.75991 -10.42739 -10.23577 -10.02418 -9.80344 -9.63825 -9.37659 -9.05869 -8.86786 -8.83465 -8.21957 -6.48458 -6.20375 -3.90844 2.17419 2.56657 2.98013 3.11712 3.22696 3.23557 3.29626 3.33775 3.47661 3.75486 4.08284 4.14257 4.21618 4.38017 4.48800 4.51501 4.63383 4.71678 4.80350 4.89741 4.92582 5.00370 5.02362 5.11094 5.12677 5.14690 5.20950 5.23792 5.30586 5.41311 5.55427 5.61867 5.62968 5.73304 5.80369 5.86363 5.91362 5.97980 6.01476 6.15705 6.34104 6.43736 6.63546 6.95334 7.60740 7.72784 7.76232 8.36436 8.63276 9.24841 10.87055 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.001633 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.240806 B =17138.945236 C =17999.971122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.738 5.738 3 C 0.517 3.483 4 O -0.517 6.517 5 C 0.052 3.948 6 H 0.068 0.932 7 C -0.141 4.141 8 N -0.489 5.489 9 C 0.062 3.938 10 C -0.154 4.154 11 H 0.124 0.876 12 C -0.132 4.132 13 H 0.105 0.895 14 C 0.154 3.846 15 N -0.737 5.737 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C -0.151 4.151 29 H 0.122 0.878 30 C 0.060 3.940 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.401 0.599 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.398 0.602 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.109 0.891 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.539 -25.482 -21.367 35.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.391 5.391 3 C 0.302 3.698 4 O -0.391 6.391 5 C -0.060 4.060 6 H 0.086 0.914 7 C -0.199 4.199 8 N -0.214 5.214 9 C -0.065 4.065 10 C -0.173 4.173 11 H 0.141 0.859 12 C -0.151 4.151 13 H 0.123 0.877 14 C 0.030 3.970 15 N -0.391 5.391 16 C 0.318 3.682 17 O -0.392 6.392 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 C -0.170 4.170 29 H 0.140 0.860 30 C -0.066 4.066 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.066 0.934 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.127 0.873 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.215 -22.777 -22.842 34.860 hybrid contribution -0.492 -2.504 2.831 3.812 sum -13.706 -25.281 -20.011 35.035 Atomic orbital electron populations 1.21541 0.79292 1.02266 1.02508 1.45789 1.07886 1.08615 1.76768 1.20470 0.89645 0.83753 0.75956 1.90701 1.69997 1.30906 1.47522 1.21805 0.92135 0.91870 1.00179 0.91395 1.21785 1.02178 0.99200 0.96690 1.65515 1.05964 1.10056 1.39820 1.22681 0.88047 0.94834 1.00985 1.23365 1.02351 0.97774 0.93830 0.85850 1.22685 0.99289 0.99713 0.93422 0.87702 1.20720 1.00198 0.95586 0.80478 1.45966 1.60157 1.26746 1.06267 1.20301 0.77250 0.81165 0.89508 1.90706 1.43036 1.34704 1.70784 1.23528 1.05853 1.07529 0.93467 1.85400 1.71267 1.23004 1.03682 1.22871 1.42656 1.11772 0.91106 0.90933 1.24990 0.94540 0.94440 0.99608 1.70014 1.34392 1.10665 1.35199 0.86169 0.78627 0.77788 0.82917 1.20287 1.20744 1.19713 1.23646 0.88817 1.00162 1.04393 0.85992 1.22805 1.00250 0.93408 0.90171 0.90611 0.92144 0.92115 0.76570 0.91107 0.91728 0.90942 0.89158 0.93444 0.91178 0.90917 0.76814 0.89208 0.89244 0.92183 0.87339 0.94186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 10.70 59.85 0.64 1.02 16 2 N -0.74 -3.56 5.61 -67.07 -0.38 -3.94 16 3 C 0.52 4.19 6.89 -10.98 -0.08 4.12 16 4 O -0.52 -6.36 14.04 5.56 0.08 -6.29 16 5 C 0.05 0.34 2.25 -68.86 -0.16 0.18 16 6 H 0.07 0.35 7.97 -51.93 -0.41 -0.06 16 7 C -0.14 -0.59 9.06 37.16 0.34 -0.25 16 8 N -0.49 -4.19 5.00 -223.38 -1.12 -5.31 16 9 C 0.06 0.44 5.35 -2.18 -0.01 0.43 16 10 C -0.15 -1.28 6.84 -89.31 -0.61 -1.89 16 11 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 12 C -0.13 -1.18 5.40 -90.62 -0.49 -1.67 16 13 H 0.10 0.86 8.04 -51.93 -0.42 0.44 16 14 C 0.15 1.83 5.95 -4.04 -0.02 1.81 16 15 N -0.74 -10.00 5.56 -60.29 -0.33 -10.33 16 16 C 0.53 10.08 7.85 -10.99 -0.09 10.00 16 17 O -0.52 -11.98 15.86 5.55 0.09 -11.89 16 18 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 19 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 20 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 21 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.33 13.22 55.49 0.73 -25.59 16 24 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 28 C -0.15 -1.42 6.73 -89.29 -0.60 -2.02 16 29 H 0.12 1.21 8.12 -51.93 -0.42 0.79 16 30 C 0.06 0.58 5.30 -2.16 -0.01 0.57 16 31 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.40 0.71 8.25 -40.82 -0.34 0.38 16 35 H 0.07 0.25 7.08 -51.93 -0.37 -0.11 16 36 H 0.06 0.13 7.56 -51.93 -0.39 -0.26 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.56 7.70 -51.93 -0.40 0.16 16 39 H 0.05 0.30 7.90 -51.93 -0.41 -0.11 16 40 H 0.07 0.91 7.94 -51.93 -0.41 0.50 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.40 4.24 8.40 -40.82 -0.34 3.90 16 43 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 44 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 45 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 46 H 0.11 1.27 6.29 -51.93 -0.33 0.95 16 47 H 0.04 0.36 7.97 -51.93 -0.41 -0.05 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -37.49 398.65 -10.40 -47.89 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.58 Total: 0.51 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -0.67 Total: -3.70 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -1.09 Total: -45.17 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.17 Total: -18.17 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.49 -10.40 -47.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734153878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.204 kcal (2) G-P(sol) polarization free energy of solvation -37.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds