Wall clock time and date at job start Sat Apr 11 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 120.00068 * 2 1 4 4 O 1.21277 * 120.00166 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99776 * 179.97438 * 3 2 1 6 6 H 1.08999 * 109.47185 * 300.00129 * 5 3 2 7 7 C 1.53001 * 109.47030 * 60.00317 * 5 3 2 8 8 N 1.46897 * 109.46982 * 180.02562 * 5 3 2 9 9 C 1.48567 * 110.99774 * 175.00238 * 8 5 3 10 10 C 1.54379 * 104.58954 * 200.95985 * 9 8 5 11 11 H 1.09002 * 117.60496 * 242.74685 * 10 9 8 12 12 C 1.53001 * 118.12885 * 87.23064 * 10 9 8 13 13 H 1.08996 * 117.44466 * 15.93430 * 12 10 9 14 14 C 1.52997 * 117.44357 * 160.68022 * 12 10 9 15 15 N 1.46506 * 109.47289 * 185.16248 * 14 12 10 16 16 C 1.34774 * 120.00072 * 180.02562 * 15 14 12 17 17 O 1.21284 * 120.00066 * 0.02562 * 16 15 14 18 18 C 1.50696 * 119.99838 * 180.02562 * 16 15 14 19 19 S 1.80997 * 109.47407 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00268 * 179.97438 * 19 18 16 21 21 H 1.07994 * 120.00294 * 359.97438 * 20 19 18 22 22 C 1.38798 * 119.99650 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00589 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99648 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47366 * 89.99998 * 24 22 20 26 26 H 1.48504 * 109.47094 * 209.99633 * 24 22 20 27 27 H 1.48498 * 109.47221 * 329.99555 * 24 22 20 28 28 C 1.52999 * 60.48623 * 268.30760 * 12 10 9 29 29 H 1.09006 * 119.52376 * 248.28227 * 28 12 10 30 30 C 1.48554 * 111.00014 * 59.58329 * 8 5 3 31 31 H 1.09001 * 109.47403 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46930 * 300.00130 * 1 2 3 33 33 H 1.09004 * 109.47189 * 59.99381 * 1 2 3 34 34 H 0.97004 * 119.99655 * 180.02562 * 2 1 3 35 35 H 1.09000 * 109.46961 * 180.02562 * 7 5 3 36 36 H 1.09001 * 109.47245 * 300.00006 * 7 5 3 37 37 H 1.08999 * 109.47289 * 59.99877 * 7 5 3 38 38 H 1.08996 * 110.40862 * 82.17971 * 9 8 5 39 39 H 1.08999 * 110.40977 * 319.73795 * 9 8 5 40 40 H 1.09001 * 109.47289 * 65.16119 * 14 12 10 41 41 H 1.09004 * 109.47261 * 305.16375 * 14 12 10 42 42 H 0.97001 * 119.99251 * 0.02562 * 15 14 12 43 43 H 1.09004 * 109.47043 * 299.99952 * 18 16 15 44 44 H 1.09001 * 109.47324 * 59.99585 * 18 16 15 45 45 H 0.96997 * 120.00713 * 180.02562 * 23 22 20 46 46 H 1.09001 * 110.41225 * 277.81748 * 30 8 5 47 47 H 1.08997 * 110.41321 * 40.13972 * 30 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6459 1.1671 0.0006 6 1 4.0089 0.6535 0.8908 7 6 4.1564 0.4456 -1.2484 8 7 4.1356 2.5521 0.0011 9 6 5.6158 2.5933 0.1225 10 6 5.9238 4.0136 0.6434 11 1 6.5153 4.6688 0.0040 12 6 5.9123 4.2455 2.1557 13 1 5.9528 3.3666 2.7990 14 6 6.6391 5.4835 2.6848 15 7 6.6248 5.4694 4.1497 16 6 7.2100 6.4689 4.8389 17 8 7.7480 7.3802 4.2465 18 6 7.1957 6.4541 6.3458 19 16 8.0541 7.9194 6.9717 20 6 7.8902 7.6527 8.7057 21 1 7.3738 6.7774 9.0710 22 6 8.4238 8.5683 9.6021 23 7 9.0527 9.6355 9.1569 24 14 8.2506 8.2852 11.4404 25 1 9.4123 7.5018 11.9323 26 1 8.2041 9.5940 12.1406 27 1 6.9978 7.5349 11.7099 28 6 4.6319 4.4705 1.3489 29 1 4.2412 5.4814 1.2322 30 6 3.6506 3.2878 1.1971 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.9500 -0.8401 -0.0004 35 1 5.2464 0.4452 -1.2477 36 1 3.7930 -0.5820 -1.2483 37 1 3.7934 0.9593 -2.1386 38 1 6.0814 2.4358 -0.8503 39 1 5.9597 1.8440 0.8354 40 1 6.1365 6.3813 2.3251 41 1 7.6703 5.4781 2.3314 42 1 6.1942 4.7407 4.6234 43 1 6.1646 6.4587 6.6994 44 1 7.6990 5.5565 6.7051 45 1 9.4259 10.2751 9.7834 46 1 2.6368 3.6532 1.0334 47 1 3.6851 2.6465 2.0777 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734153878.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:33 Heat of formation + Delta-G solvation = -59.487280 kcal Electronic energy + Delta-G solvation = -26298.334380 eV Core-core repulsion = 22414.286425 eV Total energy + Delta-G solvation = -3884.047955 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.66179 -40.68290 -40.06153 -36.77910 -35.68016 -35.15684 -34.58244 -32.14276 -30.91262 -29.50669 -27.94006 -27.70902 -27.38452 -24.96040 -22.97296 -22.06391 -21.37115 -21.16838 -20.99252 -19.81483 -18.27778 -17.88907 -17.67053 -17.24818 -16.87908 -16.70468 -16.58218 -16.26377 -15.84363 -15.56080 -15.16761 -15.09715 -14.81893 -14.63106 -14.45684 -14.05626 -13.92396 -13.74273 -13.47385 -13.34819 -13.16802 -13.16446 -13.02489 -12.92597 -12.88384 -12.61981 -12.35756 -12.29115 -12.11719 -11.73140 -11.24805 -11.14189 -10.99848 -10.86576 -10.65756 -10.27634 -10.13898 -10.09364 -9.43884 -8.66818 -8.34453 -6.12773 1.26487 1.42684 1.46745 1.57260 1.60062 1.60105 2.09071 2.22286 2.27918 2.57236 2.94254 2.99632 3.31234 3.35223 3.61592 3.78130 3.87445 3.99120 4.02588 4.11433 4.15299 4.20325 4.24847 4.29760 4.42706 4.45828 4.50885 4.51621 4.60669 4.67044 4.70899 4.78256 4.87224 4.94003 4.95155 5.05108 5.16086 5.21728 5.27519 5.41923 5.43253 5.45639 5.73837 5.90973 6.19990 6.49045 6.55847 7.06711 7.22829 7.26944 8.74805 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020918 B = 0.001633 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.240806 B =17138.945236 C =17999.971122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.723 5.723 3 C 0.508 3.492 4 O -0.569 6.569 5 C 0.053 3.947 6 H 0.088 0.912 7 C -0.136 4.136 8 N -0.508 5.508 9 C 0.066 3.934 10 C -0.146 4.146 11 H 0.125 0.875 12 C -0.119 4.119 13 H 0.123 0.877 14 C 0.155 3.845 15 N -0.710 5.710 16 C 0.533 3.467 17 O -0.567 6.567 18 C -0.129 4.129 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.267 1.267 26 H -0.278 1.278 27 H -0.258 1.258 28 C -0.164 4.164 29 H 0.108 0.892 30 C 0.069 3.931 31 H 0.111 0.889 32 H 0.045 0.955 33 H 0.046 0.954 34 H 0.418 0.582 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.054 0.946 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.417 0.583 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.271 0.729 46 H 0.080 0.920 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.883 -29.280 -20.900 38.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.376 5.376 3 C 0.295 3.705 4 O -0.447 6.447 5 C -0.059 4.059 6 H 0.106 0.894 7 C -0.193 4.193 8 N -0.233 5.233 9 C -0.061 4.061 10 C -0.165 4.165 11 H 0.143 0.857 12 C -0.138 4.138 13 H 0.141 0.859 14 C 0.031 3.969 15 N -0.364 5.364 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.280 4.280 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.192 1.192 26 H -0.203 1.203 27 H -0.182 1.182 28 C -0.183 4.183 29 H 0.127 0.873 30 C -0.058 4.058 31 H 0.129 0.871 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.255 0.745 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.254 0.746 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.584 -26.684 -22.397 37.393 hybrid contribution -0.472 -1.419 2.548 2.955 sum -14.055 -28.104 -19.849 37.166 Atomic orbital electron populations 1.21626 0.78994 1.04135 1.01134 1.45721 1.08205 1.08605 1.75068 1.20934 0.90593 0.83769 0.75223 1.90688 1.71070 1.32822 1.50157 1.21914 0.90840 0.91062 1.02085 0.89417 1.21797 1.02843 1.00055 0.94636 1.65458 1.06850 1.11589 1.39386 1.22723 0.87177 0.94095 1.02062 1.23498 1.01042 0.98789 0.93203 0.85667 1.22493 0.98388 0.98707 0.94218 0.85880 1.20776 1.00372 0.96723 0.78992 1.45704 1.58110 1.25506 1.07076 1.20074 0.77385 0.81636 0.88988 1.90696 1.45594 1.36905 1.71344 1.23368 1.05917 1.04295 0.94451 1.85590 1.73348 1.28518 1.05078 1.23212 1.42814 1.12274 0.91182 0.89851 1.26137 0.93820 0.93906 1.05308 1.70182 1.35537 1.11853 1.37197 0.84945 0.79293 0.77953 0.75724 1.19221 1.20331 1.18218 1.23582 0.89414 0.99713 1.05609 0.87346 1.22588 0.98760 0.93564 0.90897 0.87063 0.93614 0.93483 0.74490 0.89947 0.89132 0.92687 0.87863 0.91820 0.92490 0.91233 0.74626 0.87278 0.86970 0.91987 0.90197 0.93631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 127.77 1.37 2.02 16 2 N -0.72 -5.74 5.61 -484.51 -2.72 -8.46 16 3 C 0.51 7.84 6.89 87.66 0.60 8.45 16 4 O -0.57 -14.50 14.04 -3.02 -0.04 -14.54 16 5 C 0.05 0.56 2.25 44.17 0.10 0.66 16 6 H 0.09 0.61 7.97 -2.39 -0.02 0.59 16 7 C -0.14 -0.76 9.06 71.98 0.65 -0.11 16 8 N -0.51 -8.01 5.00 -860.64 -4.30 -12.32 16 9 C 0.07 0.77 5.35 86.45 0.46 1.23 16 10 C -0.15 -2.18 6.84 -9.95 -0.07 -2.25 16 11 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 12 C -0.12 -1.90 5.40 -10.79 -0.06 -1.96 16 13 H 0.12 1.58 8.04 -2.39 -0.02 1.56 16 14 C 0.15 3.51 5.95 86.38 0.51 4.03 16 15 N -0.71 -18.04 5.56 -463.05 -2.57 -20.62 16 16 C 0.53 19.92 7.85 87.66 0.69 20.61 16 17 O -0.57 -26.76 15.86 -3.04 -0.05 -26.80 16 18 C -0.13 -5.14 6.16 71.23 0.44 -4.70 16 19 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 20 C -0.55 -31.42 9.50 67.95 0.65 -30.78 16 21 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.75 5.49 84.86 0.47 1.21 16 23 N -0.91 -56.35 13.22 21.65 0.29 -56.07 16 24 Si 1.00 43.75 29.55 68.60 2.03 45.77 16 25 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 27 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 28 C -0.16 -3.00 6.73 -9.93 -0.07 -3.07 16 29 H 0.11 2.25 8.12 -2.38 -0.02 2.23 16 30 C 0.07 1.30 5.30 86.47 0.46 1.75 16 31 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.42 0.25 8.25 -92.71 -0.76 -0.52 16 35 H 0.08 0.30 7.08 -2.39 -0.02 0.28 16 36 H 0.09 0.03 7.56 -2.39 -0.02 0.01 16 37 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 0.96 7.70 -2.39 -0.02 0.94 16 39 H 0.06 0.56 7.90 -2.39 -0.02 0.54 16 40 H 0.06 1.48 7.94 -2.39 -0.02 1.46 16 41 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.42 7.64 8.40 -92.71 -0.78 6.86 16 43 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 44 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 45 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.08 1.98 6.29 -2.39 -0.02 1.97 16 47 H 0.05 0.77 7.97 -2.39 -0.02 0.75 16 Total: -1.00 -85.66 398.65 -2.88 -88.54 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.55 Total: 17.10 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: 6.20 Total: -2.90 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -9.30 Total: -97.46 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -0.09 Total: -41.34 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.16 Total: -9.72 kcal Total: -85.66 -2.88 -88.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734153878.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.053 kcal (2) G-P(sol) polarization free energy of solvation -85.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds