Wall clock time and date at job start Sat Apr 11 2020 06:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46849 * 110.99930 * 2 1 4 4 C 1.53039 * 109.52423 * 185.84087 * 3 2 1 5 5 C 1.53116 * 109.27543 * 300.82421 * 4 3 2 6 6 C 1.50705 * 109.52234 * 177.56054 * 5 4 3 7 7 O 1.21281 * 119.99554 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00221 * 180.02562 * 6 5 4 9 9 C 1.47582 * 134.48994 * 180.02562 * 8 6 5 10 10 C 1.53950 * 86.11527 * 155.35548 * 9 8 6 11 11 N 1.46503 * 113.74313 * 269.15304 * 10 9 8 12 12 C 1.34768 * 120.00164 * 203.07427 * 11 10 9 13 13 O 1.21280 * 120.00276 * 0.02562 * 12 11 10 14 14 C 1.50698 * 120.00045 * 179.97438 * 12 11 10 15 15 S 1.81001 * 109.47279 * 180.02562 * 14 12 11 16 16 C 1.76202 * 100.00203 * 179.97438 * 15 14 12 17 17 H 1.08000 * 119.99678 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00162 * 179.97438 * 16 15 14 19 19 N 1.31635 * 119.99674 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00098 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47295 * 60.00169 * 20 18 16 22 22 H 1.48495 * 109.47372 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47431 * 300.00423 * 20 18 16 24 24 C 1.47805 * 134.45584 * 359.86265 * 8 6 5 25 25 C 1.53119 * 109.16518 * 57.65387 * 5 4 3 26 26 C 1.46847 * 111.00301 * 124.21281 * 2 1 3 27 27 H 1.09000 * 109.47277 * 59.99983 * 1 2 3 28 28 H 1.09005 * 109.47289 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47012 * 299.99431 * 1 2 3 30 30 H 1.09001 * 109.46011 * 65.82963 * 3 2 1 31 31 H 1.09003 * 109.46384 * 305.85690 * 3 2 1 32 32 H 1.08994 * 109.50162 * 180.88248 * 4 3 2 33 33 H 1.09000 * 109.49966 * 60.76115 * 4 3 2 34 34 H 1.09000 * 109.52486 * 297.68377 * 5 4 3 35 35 H 1.08999 * 113.77186 * 41.05506 * 9 8 6 36 36 H 1.09004 * 113.76624 * 269.64983 * 9 8 6 37 37 H 1.09002 * 113.74276 * 137.95197 * 10 9 8 38 38 H 0.97006 * 119.99523 * 23.07305 * 11 10 9 39 39 H 1.09004 * 109.46895 * 299.99896 * 14 12 11 40 40 H 1.08997 * 109.47176 * 60.00031 * 14 12 11 41 41 H 0.96996 * 119.99559 * 179.97438 * 19 18 16 42 42 H 1.08999 * 113.77157 * 90.38364 * 24 8 6 43 43 H 1.09002 * 113.84143 * 318.91627 * 24 8 6 44 44 H 1.09007 * 109.49952 * 62.28557 * 25 5 4 45 45 H 1.08999 * 109.50558 * 182.39904 * 25 5 4 46 46 H 1.08994 * 109.46273 * 294.17601 * 26 2 1 47 47 H 1.08999 * 109.45926 * 54.14294 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1187 0.5370 1.0143 6 6 5.6133 0.4463 0.8430 7 8 6.1467 0.9674 -0.1135 8 7 6.3569 -0.2145 1.7522 9 6 7.7978 -0.4963 1.9020 10 6 7.5078 -0.6331 3.4077 11 7 7.6546 0.6196 4.1529 12 6 7.8944 0.5909 5.4788 13 8 7.9890 -0.4721 6.0551 14 6 8.0460 1.8795 6.2452 15 16 8.3588 1.5109 7.9895 16 6 8.4916 3.1474 8.6290 17 1 8.3802 3.9955 7.9697 18 6 8.7384 3.3465 9.9803 19 7 8.8737 2.3128 10.7840 20 14 8.8785 5.0814 10.6585 21 1 7.6092 5.8124 10.4141 22 1 9.1430 5.0223 12.1185 23 1 9.9952 5.7888 9.9818 24 6 6.0563 -0.9455 3.0013 25 6 3.5181 -0.8715 1.0207 26 6 1.9953 -0.7708 1.1337 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.7325 1.8608 0.9376 31 1 1.5633 1.9258 -0.8330 32 1 3.9098 2.3513 -0.1310 33 1 3.7812 0.8568 -1.0907 34 1 3.8896 1.0360 1.9559 35 1 8.4391 0.3493 1.6531 36 1 8.1151 -1.4260 1.4295 37 1 8.0216 -1.4708 3.8793 38 1 7.5793 1.4698 3.6919 39 1 8.8826 2.4478 5.8386 40 1 7.1312 2.4653 6.1557 41 1 9.0465 2.4519 11.7282 42 1 5.8606 -2.0074 2.8526 43 1 5.3100 -0.4578 3.6284 44 1 3.7814 -1.3836 0.0951 45 1 3.9099 -1.4303 1.8706 46 1 1.7325 -0.2710 2.0659 47 1 1.5634 -1.7716 1.1241 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001745823159.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:39 Heat of formation + Delta-G solvation = -35.314934 kcal Electronic energy + Delta-G solvation = -27123.751371 eV Core-core repulsion = 23240.751607 eV Total energy + Delta-G solvation = -3882.999764 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.03698 -39.67916 -38.62991 -37.63759 -34.04550 -33.50799 -32.46724 -31.33124 -30.10823 -28.64578 -27.25431 -26.49789 -25.52501 -23.82465 -23.49541 -21.92798 -20.65809 -20.22689 -19.19731 -17.94323 -17.36695 -16.81925 -16.57297 -16.09498 -15.81138 -15.51351 -15.38126 -15.04009 -14.91909 -14.83604 -14.38180 -13.95987 -13.89292 -13.51729 -13.32197 -13.17991 -13.02543 -12.85132 -12.77197 -12.56308 -12.32301 -12.09810 -11.90040 -11.66530 -11.59734 -11.36431 -11.08842 -11.07691 -11.06751 -10.85450 -10.80731 -9.90286 -9.85767 -9.59751 -9.17178 -9.09050 -8.97225 -8.77288 -8.30542 -6.55340 -6.25677 -3.96832 2.33861 2.50774 2.87643 2.89949 3.20987 3.24094 3.26990 3.48435 3.58021 3.94106 4.16508 4.19835 4.28511 4.36958 4.60126 4.68292 4.73863 4.88179 4.95453 4.99952 5.02621 5.05851 5.06156 5.09646 5.10757 5.17579 5.22909 5.24464 5.32083 5.39911 5.40828 5.45683 5.46728 5.57294 5.66725 5.73364 5.74965 5.80919 5.99034 6.07235 6.46200 6.60805 6.63326 7.36357 7.53651 7.56063 7.89557 8.31088 8.44886 9.19764 10.81651 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.002112 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.326433 B =13255.191559 C =14089.690657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.545 5.545 3 C 0.055 3.945 4 C -0.096 4.096 5 C -0.103 4.103 6 C 0.542 3.458 7 O -0.540 6.540 8 N -0.645 5.645 9 C 0.099 3.901 10 C 0.115 3.885 11 N -0.720 5.720 12 C 0.537 3.463 13 O -0.513 6.513 14 C -0.154 4.154 15 S -0.058 6.058 16 C -0.537 4.537 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.086 3.914 25 C -0.107 4.107 26 C 0.056 3.944 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.401 0.599 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.269 0.731 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.037 0.963 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.208 -6.349 -22.238 26.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.270 5.270 3 C -0.073 4.073 4 C -0.134 4.134 5 C -0.125 4.125 6 C 0.332 3.668 7 O -0.417 6.417 8 N -0.382 5.382 9 C -0.024 4.024 10 C 0.007 3.993 11 N -0.374 5.374 12 C 0.323 3.677 13 O -0.386 6.386 14 C -0.305 4.305 15 S 0.169 5.831 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.039 4.039 25 C -0.145 4.145 26 C -0.071 4.071 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.139 0.861 38 H 0.236 0.764 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.055 0.945 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.694 -8.017 -22.160 26.767 hybrid contribution -0.428 3.121 0.317 3.166 sum -13.122 -4.896 -21.843 25.947 Atomic orbital electron populations 1.22354 0.87051 1.02176 1.00772 1.61938 1.07738 1.13952 1.43356 1.22142 0.95322 0.89024 1.00824 1.21412 0.93329 1.00507 0.98155 1.21339 0.90943 0.98678 1.01509 1.20321 0.88654 0.77365 0.80424 1.90710 1.73803 1.47179 1.29991 1.50189 1.09124 1.53509 1.25332 1.23569 0.83030 1.02360 0.93398 1.22324 0.95654 0.89754 0.91558 1.45707 1.75117 1.08003 1.08576 1.20371 0.74783 0.91459 0.81044 1.90709 1.48037 1.31819 1.68058 1.23538 1.05032 0.97217 1.04698 1.85373 1.93323 1.11469 0.92950 1.22821 1.57128 0.92145 0.96422 0.90959 1.24992 0.94525 0.98217 0.95818 1.70003 1.45364 1.29860 1.05027 0.86219 0.78800 0.82624 0.77837 1.19943 1.20786 1.19913 1.23903 0.99167 0.97590 0.83196 1.21598 0.94735 0.94928 1.03259 1.22083 0.94812 0.98618 0.91629 0.91262 0.91291 0.95574 0.94670 0.90255 0.90665 0.90197 0.88845 0.89404 0.88318 0.86064 0.76415 0.89062 0.89173 0.92088 0.88415 0.89349 0.90529 0.90730 0.94490 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.59 60.06 0.58 0.72 16 2 N -0.55 -4.15 4.91 -242.97 -1.19 -5.34 16 3 C 0.05 0.41 5.46 -3.83 -0.02 0.39 16 4 C -0.10 -0.85 4.68 -26.65 -0.12 -0.97 16 5 C -0.10 -0.89 2.42 -91.65 -0.22 -1.12 16 6 C 0.54 6.00 7.39 -10.98 -0.08 5.92 16 7 O -0.54 -7.97 16.70 5.56 0.09 -7.88 16 8 N -0.64 -5.94 3.57 -178.34 -0.64 -6.58 16 9 C 0.10 0.82 8.58 -2.96 -0.03 0.80 16 10 C 0.11 1.09 4.40 -70.15 -0.31 0.78 16 11 N -0.72 -8.56 5.37 -55.35 -0.30 -8.85 16 12 C 0.54 9.09 7.85 -10.99 -0.09 9.00 16 13 O -0.51 -10.54 15.48 5.56 0.09 -10.46 16 14 C -0.15 -2.95 6.16 36.00 0.22 -2.72 16 15 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 16 C -0.54 -14.98 9.50 30.94 0.29 -14.69 16 17 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 19 N -0.87 -25.70 13.22 55.49 0.73 -24.97 16 20 Si 0.92 21.11 29.55 -169.99 -5.02 16.08 16 21 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 C 0.09 0.67 6.74 -2.85 -0.02 0.65 16 25 C -0.11 -0.78 5.23 -26.65 -0.14 -0.92 16 26 C 0.06 0.39 5.46 -3.84 -0.02 0.37 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 29 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.54 8.12 -51.93 -0.42 0.11 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.82 8.04 -51.93 -0.42 0.41 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.12 1.22 7.51 -51.93 -0.39 0.83 16 38 H 0.40 4.15 8.74 -40.82 -0.36 3.79 16 39 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 40 H 0.09 1.60 8.14 -51.92 -0.42 1.17 16 41 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.10 0.56 8.01 -51.93 -0.42 0.15 16 43 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.46 6.27 -51.93 -0.33 0.14 16 46 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 47 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 LS Contribution 396.34 15.07 5.97 5.97 Total: -1.00 -35.25 396.34 -10.31 -45.56 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.78 Total: -0.01 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -0.05 Total: 0.19 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -1.39 Total: -45.74 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.18 Total: -18.34 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.25 -10.31 -45.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001745823159.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.248 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds