Wall clock time and date at job start Sat Apr 11 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46903 * 109.46799 * 2 1 4 4 C 1.46904 * 110.99621 * 297.82680 * 3 2 1 5 5 C 1.52995 * 109.47435 * 288.32754 * 4 3 2 6 6 N 1.46493 * 109.47417 * 180.02562 * 5 4 3 7 7 C 1.34780 * 120.00272 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99951 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99755 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.46934 * 179.97438 * 9 7 6 11 11 C 1.76201 * 100.00111 * 180.02562 * 10 9 7 12 12 H 1.07994 * 119.99776 * 359.97438 * 11 10 9 13 13 C 1.38795 * 119.99825 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00223 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00072 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47050 * 89.99647 * 15 13 11 17 17 H 1.48502 * 109.47541 * 210.00139 * 15 13 11 18 18 H 1.48504 * 109.47223 * 330.00476 * 15 13 11 19 19 C 1.46893 * 111.00471 * 61.78010 * 3 2 1 20 20 C 1.50703 * 109.46800 * 66.04682 * 19 3 2 21 21 N 1.30259 * 125.61907 * 89.99934 * 20 19 3 22 22 C 1.34483 * 108.70042 * 179.97438 * 21 20 19 23 23 C 1.50701 * 126.16401 * 180.02562 * 22 21 20 24 24 C 1.34329 * 107.67024 * 0.02562 * 22 21 20 25 25 C 1.50691 * 126.44689 * 179.97438 * 24 22 21 26 26 O 1.33970 * 125.62261 * 270.28696 * 20 19 3 27 27 H 1.09003 * 109.46981 * 181.97974 * 1 2 3 28 28 H 1.08996 * 109.47424 * 301.98771 * 1 2 3 29 29 H 1.09008 * 109.46662 * 61.99005 * 1 2 3 30 30 H 1.08997 * 109.47403 * 239.99610 * 2 1 3 31 31 H 1.08999 * 109.46943 * 119.99178 * 2 1 3 32 32 H 1.08997 * 109.47353 * 48.33497 * 4 3 2 33 33 H 1.09007 * 109.47033 * 168.33014 * 4 3 2 34 34 H 1.08995 * 109.47468 * 300.07754 * 5 4 3 35 35 H 1.09004 * 109.46812 * 60.07697 * 5 4 3 36 36 H 0.97004 * 120.00030 * 0.02562 * 6 5 4 37 37 H 1.08999 * 109.47857 * 299.99606 * 9 7 6 38 38 H 1.08994 * 109.47385 * 60.00628 * 9 7 6 39 39 H 0.97006 * 119.99844 * 180.02562 * 14 13 11 40 40 H 1.08995 * 109.47396 * 306.04890 * 19 3 2 41 41 H 1.08995 * 109.47560 * 186.04022 * 19 3 2 42 42 H 1.08998 * 109.46842 * 270.00289 * 23 22 21 43 43 H 1.08998 * 109.46892 * 29.99916 * 23 22 21 44 44 H 1.08994 * 109.46731 * 150.00280 * 23 22 21 45 45 H 1.09006 * 109.47101 * 89.99424 * 25 24 22 46 46 H 1.08994 * 109.47571 * 209.99877 * 25 24 22 47 47 H 1.09005 * 109.47137 * 330.00194 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5914 2.0947 -1.2129 5 6 2.3718 1.5635 -2.4169 6 7 1.9453 2.2716 -3.6263 7 6 2.5003 1.9677 -4.8164 8 8 3.3526 1.1077 -4.8860 9 6 2.0618 2.6966 -6.0603 10 16 2.9849 2.0682 -7.4848 11 6 2.2932 3.0656 -8.7620 12 1 1.5318 3.7941 -8.5256 13 6 2.7261 2.9143 -10.0720 14 7 3.6537 2.0260 -10.3602 15 14 1.9923 3.9712 -11.4262 16 1 2.7889 5.2164 -11.5689 17 1 2.0138 3.2201 -12.7071 18 1 0.5905 4.3177 -11.0791 19 6 1.5838 2.0976 1.2083 20 6 2.2418 1.4847 2.4177 21 7 3.3859 1.8471 2.9241 22 6 3.6470 1.0763 3.9947 23 6 4.8677 1.1603 4.8746 24 6 2.6237 0.2181 4.1386 25 6 2.4832 -0.8367 5.2056 26 8 1.7491 0.4739 3.1459 27 1 -0.3633 -1.0271 0.0355 28 1 -0.3634 0.5444 0.8716 29 1 -0.3633 0.4827 -0.9074 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.5252 1.9332 -1.3710 33 1 1.7841 3.1613 -1.0969 34 1 3.4382 1.7238 -2.2582 35 1 2.1781 0.4972 -2.5337 36 1 1.2633 2.9593 -3.5707 37 1 0.9954 2.5363 -6.2187 38 1 2.2557 3.7629 -5.9441 39 1 3.9565 1.9205 -11.2757 40 1 0.5009 2.0197 1.3054 41 1 1.8673 3.1473 1.1334 42 1 5.6443 0.5040 4.4819 43 1 5.2336 2.1869 4.8911 44 1 4.6078 0.8507 5.8868 45 1 1.9671 -0.4146 6.0681 46 1 1.9089 -1.6760 4.8135 47 1 3.4719 -1.1824 5.5073 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753078545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:44 Heat of formation + Delta-G solvation = -13.764194 kcal Electronic energy + Delta-G solvation = -26312.536737 eV Core-core repulsion = 22430.471483 eV Total energy + Delta-G solvation = -3882.065253 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.68447 -39.43682 -38.53257 -35.50436 -34.67641 -33.51960 -32.41599 -31.05772 -30.62719 -29.53414 -28.78276 -26.64804 -25.45859 -24.99657 -23.71030 -22.01669 -21.08521 -20.55351 -20.13675 -17.82233 -17.43251 -16.90735 -16.62244 -16.36257 -16.09017 -15.54733 -15.13591 -14.96709 -14.79178 -14.56061 -14.28219 -13.83367 -13.72381 -13.64364 -13.49285 -13.46311 -13.08919 -13.05447 -12.82973 -12.69936 -12.55544 -12.35297 -12.21051 -12.06733 -11.73979 -11.50470 -11.27110 -11.05485 -11.01319 -10.98182 -10.75560 -10.75306 -9.80514 -9.40387 -9.05800 -8.96521 -8.85771 -8.74507 -8.21786 -6.48431 -6.20328 -3.90844 1.04430 2.20193 2.32684 2.97839 3.12819 3.23296 3.26214 3.30855 3.48195 3.63018 3.92047 4.21635 4.30995 4.43117 4.49118 4.54661 4.68528 4.72158 4.82300 4.89178 4.90627 4.91559 5.04418 5.13178 5.14107 5.14800 5.20047 5.21767 5.29120 5.39806 5.49044 5.55283 5.63226 5.65864 5.73828 5.77390 5.80405 5.91464 5.98165 6.01292 6.15216 6.45353 6.47863 6.67028 7.46336 7.60706 7.71484 8.36411 8.63794 9.24907 10.87070 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031305 B = 0.001571 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.198746 B =17823.919401 C =18060.382829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.041 3.959 3 N -0.526 5.526 4 C 0.042 3.958 5 C 0.127 3.873 6 N -0.739 5.739 7 C 0.533 3.467 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.060 6.060 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.074 3.926 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.150 3.850 20 C 0.200 3.800 21 N -0.460 5.460 22 C -0.015 4.015 23 C -0.071 4.071 24 C -0.054 4.054 25 C -0.066 4.066 26 O -0.201 6.201 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.397 0.603 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.118 0.882 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.255 -2.164 33.464 34.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.086 4.086 3 N -0.251 5.251 4 C -0.085 4.085 5 C 0.002 3.998 6 N -0.395 5.395 7 C 0.318 3.682 8 O -0.389 6.389 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.021 3.979 20 C -0.008 4.008 21 N -0.190 5.190 22 C -0.135 4.135 23 C -0.128 4.128 24 C -0.107 4.107 25 C -0.123 4.123 26 O -0.089 6.089 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.230 0.770 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.136 0.864 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.097 0.903 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.853 -3.253 32.959 33.473 hybrid contribution -3.069 1.451 -0.499 3.431 sum -7.922 -1.803 32.460 33.461 Atomic orbital electron populations 1.22421 0.97662 1.03080 1.02061 1.22323 0.93348 0.89321 1.03646 1.61977 1.59941 1.02625 1.00541 1.22314 0.98269 0.98953 0.89002 1.21122 0.99692 0.96601 0.82386 1.45901 1.44143 1.42329 1.07095 1.20281 0.81148 0.82919 0.83809 1.90712 1.30788 1.31663 1.85784 1.23526 1.05337 1.03257 0.98237 1.85420 1.51612 1.51452 0.94885 1.22871 1.26890 1.24595 0.94067 0.90926 1.24990 0.94921 0.95642 0.98020 1.70022 1.27581 1.32535 1.20125 0.86170 0.79308 0.79788 0.80228 1.20266 1.20760 1.19722 1.20430 0.97053 0.97771 0.82610 1.25823 0.90950 0.87958 0.96049 1.70353 1.13172 1.26722 1.08767 1.21574 0.98935 0.95982 0.97057 1.20114 0.92579 1.03728 0.96419 1.23178 0.91090 1.02733 0.93666 1.20257 1.04236 0.94478 0.93349 1.84384 1.45430 1.44827 1.34221 0.91523 0.92449 0.91809 0.89389 0.90764 0.92856 0.89635 0.90587 0.91625 0.76963 0.89251 0.89180 0.92189 0.91198 0.86414 0.90640 0.90503 0.90854 0.89924 0.90333 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 9.28 37.16 0.34 -1.02 16 2 C 0.04 0.36 5.74 -3.82 -0.02 0.33 16 3 N -0.53 -4.69 4.66 -236.08 -1.10 -5.79 16 4 C 0.04 0.34 4.94 -3.82 -0.02 0.32 16 5 C 0.13 1.49 5.71 -4.05 -0.02 1.47 16 6 N -0.74 -9.64 5.56 -60.30 -0.34 -9.97 16 7 C 0.53 9.97 7.85 -10.98 -0.09 9.88 16 8 O -0.52 -11.92 15.86 5.56 0.09 -11.83 16 9 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 10 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 11 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 12 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 13 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 14 N -0.87 -26.27 13.22 55.49 0.73 -25.54 16 15 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 19 C 0.15 1.17 5.37 -4.98 -0.03 1.15 16 20 C 0.20 2.06 6.92 -12.94 -0.09 1.97 16 21 N -0.46 -5.48 11.29 -7.35 -0.08 -5.57 16 22 C -0.02 -0.15 7.11 -82.81 -0.59 -0.74 16 23 C -0.07 -0.46 10.05 36.01 0.36 -0.10 16 24 C -0.05 -0.46 7.39 -35.69 -0.26 -0.73 16 25 C -0.07 -0.29 10.04 36.00 0.36 0.07 16 26 O -0.20 -2.00 10.09 5.35 0.05 -1.95 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.38 6.22 -51.93 -0.32 0.05 16 29 H 0.06 0.45 6.32 -51.92 -0.33 0.12 16 30 H 0.09 0.82 6.61 -51.93 -0.34 0.48 16 31 H 0.07 0.71 6.70 -51.93 -0.35 0.36 16 32 H 0.05 0.37 5.89 -51.93 -0.31 0.06 16 33 H 0.09 0.59 7.82 -51.92 -0.41 0.19 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.84 6.72 -51.93 -0.35 0.49 16 36 H 0.40 3.83 8.47 -40.82 -0.35 3.48 16 37 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 38 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.07 0.43 6.02 -51.93 -0.31 0.12 16 41 H 0.12 0.81 7.86 -51.93 -0.41 0.40 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.29 7.79 -51.93 -0.40 -0.11 16 45 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 0.25 7.80 -51.93 -0.40 -0.15 16 LS Contribution 399.13 15.07 6.01 6.01 Total: -1.00 -37.22 399.13 -8.70 -45.92 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -7.20 Total: -0.59 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 0.37 Total: -3.25 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.78 Total: -46.87 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.14 Total: -13.78 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.22 -8.70 -45.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753078545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.151 kcal (2) G-P(sol) polarization free energy of solvation -37.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds