Wall clock time and date at job start Sat Apr 11 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46903 * 109.46799 * 2 1 4 4 C 1.46904 * 110.99621 * 297.82680 * 3 2 1 5 5 C 1.52995 * 109.47435 * 288.32754 * 4 3 2 6 6 N 1.46493 * 109.47417 * 180.02562 * 5 4 3 7 7 C 1.34780 * 120.00272 * 180.02562 * 6 5 4 8 8 O 1.21278 * 119.99951 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99755 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.46934 * 179.97438 * 9 7 6 11 11 C 1.76201 * 100.00111 * 180.02562 * 10 9 7 12 12 H 1.07994 * 119.99776 * 359.97438 * 11 10 9 13 13 C 1.38795 * 119.99825 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00223 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00072 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47050 * 89.99647 * 15 13 11 17 17 H 1.48502 * 109.47541 * 210.00139 * 15 13 11 18 18 H 1.48504 * 109.47223 * 330.00476 * 15 13 11 19 19 C 1.46893 * 111.00471 * 61.78010 * 3 2 1 20 20 C 1.50703 * 109.46800 * 66.04682 * 19 3 2 21 21 N 1.30259 * 125.61907 * 89.99934 * 20 19 3 22 22 C 1.34483 * 108.70042 * 179.97438 * 21 20 19 23 23 C 1.50701 * 126.16401 * 180.02562 * 22 21 20 24 24 C 1.34329 * 107.67024 * 0.02562 * 22 21 20 25 25 C 1.50691 * 126.44689 * 179.97438 * 24 22 21 26 26 O 1.33970 * 125.62261 * 270.28696 * 20 19 3 27 27 H 1.09003 * 109.46981 * 181.97974 * 1 2 3 28 28 H 1.08996 * 109.47424 * 301.98771 * 1 2 3 29 29 H 1.09008 * 109.46662 * 61.99005 * 1 2 3 30 30 H 1.08997 * 109.47403 * 239.99610 * 2 1 3 31 31 H 1.08999 * 109.46943 * 119.99178 * 2 1 3 32 32 H 1.08997 * 109.47353 * 48.33497 * 4 3 2 33 33 H 1.09007 * 109.47033 * 168.33014 * 4 3 2 34 34 H 1.08995 * 109.47468 * 300.07754 * 5 4 3 35 35 H 1.09004 * 109.46812 * 60.07697 * 5 4 3 36 36 H 0.97004 * 120.00030 * 0.02562 * 6 5 4 37 37 H 1.08999 * 109.47857 * 299.99606 * 9 7 6 38 38 H 1.08994 * 109.47385 * 60.00628 * 9 7 6 39 39 H 0.97006 * 119.99844 * 180.02562 * 14 13 11 40 40 H 1.08995 * 109.47396 * 306.04890 * 19 3 2 41 41 H 1.08995 * 109.47560 * 186.04022 * 19 3 2 42 42 H 1.08998 * 109.46842 * 270.00289 * 23 22 21 43 43 H 1.08998 * 109.46892 * 29.99916 * 23 22 21 44 44 H 1.08994 * 109.46731 * 150.00280 * 23 22 21 45 45 H 1.09006 * 109.47101 * 89.99424 * 25 24 22 46 46 H 1.08994 * 109.47571 * 209.99877 * 25 24 22 47 47 H 1.09005 * 109.47137 * 330.00194 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.5914 2.0947 -1.2129 5 6 2.3718 1.5635 -2.4169 6 7 1.9453 2.2716 -3.6263 7 6 2.5003 1.9677 -4.8164 8 8 3.3526 1.1077 -4.8860 9 6 2.0618 2.6966 -6.0603 10 16 2.9849 2.0682 -7.4848 11 6 2.2932 3.0656 -8.7620 12 1 1.5318 3.7941 -8.5256 13 6 2.7261 2.9143 -10.0720 14 7 3.6537 2.0260 -10.3602 15 14 1.9923 3.9712 -11.4262 16 1 2.7889 5.2164 -11.5689 17 1 2.0138 3.2201 -12.7071 18 1 0.5905 4.3177 -11.0791 19 6 1.5838 2.0976 1.2083 20 6 2.2418 1.4847 2.4177 21 7 3.3859 1.8471 2.9241 22 6 3.6470 1.0763 3.9947 23 6 4.8677 1.1603 4.8746 24 6 2.6237 0.2181 4.1386 25 6 2.4832 -0.8367 5.2056 26 8 1.7491 0.4739 3.1459 27 1 -0.3633 -1.0271 0.0355 28 1 -0.3634 0.5444 0.8716 29 1 -0.3633 0.4827 -0.9074 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.5252 1.9332 -1.3710 33 1 1.7841 3.1613 -1.0969 34 1 3.4382 1.7238 -2.2582 35 1 2.1781 0.4972 -2.5337 36 1 1.2633 2.9593 -3.5707 37 1 0.9954 2.5363 -6.2187 38 1 2.2557 3.7629 -5.9441 39 1 3.9565 1.9205 -11.2757 40 1 0.5009 2.0197 1.3054 41 1 1.8673 3.1473 1.1334 42 1 5.6443 0.5040 4.4819 43 1 5.2336 2.1869 4.8911 44 1 4.6078 0.8507 5.8868 45 1 1.9671 -0.4146 6.0681 46 1 1.9089 -1.6760 4.8135 47 1 3.4719 -1.1824 5.5073 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753078545.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:44 Heat of formation + Delta-G solvation = -43.607266 kcal Electronic energy + Delta-G solvation = -26313.830829 eV Core-core repulsion = 22430.471483 eV Total energy + Delta-G solvation = -3883.359346 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.36056 -40.69641 -39.44676 -36.18761 -35.89629 -34.57305 -34.14310 -32.03914 -31.43559 -30.17178 -29.81464 -27.75104 -27.33587 -25.57798 -24.51518 -22.75127 -21.85813 -21.76976 -20.97424 -19.79648 -18.17825 -17.78544 -17.62574 -17.28916 -17.18377 -16.86724 -16.60699 -16.31429 -15.81584 -15.58789 -15.19523 -14.99267 -14.70282 -14.45346 -14.27402 -14.23824 -14.16794 -13.80051 -13.67191 -13.50408 -13.26882 -13.18690 -13.15414 -12.99628 -12.88345 -12.84567 -12.60638 -12.56339 -12.26937 -11.99402 -11.72781 -11.69326 -11.47715 -11.13208 -10.99152 -10.25838 -10.11231 -9.59011 -9.37853 -8.65766 -8.33459 -6.11745 0.38234 1.27146 1.43606 1.46270 1.54033 1.60488 1.62530 1.68754 2.20708 2.28973 2.92838 3.00771 3.05863 3.35027 3.74216 3.78819 3.86558 3.95597 4.00043 4.07643 4.14124 4.23211 4.32138 4.33356 4.35373 4.39052 4.51216 4.53121 4.63595 4.66307 4.75344 4.80301 4.82748 4.83941 4.97257 4.98891 5.00334 5.09456 5.18233 5.27051 5.39896 5.43013 5.43208 5.80980 5.87737 6.21018 6.52329 6.77200 7.07800 7.26514 8.75775 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.031305 B = 0.001571 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.198746 B =17823.919401 C =18060.382829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.045 3.955 3 N -0.543 5.543 4 C 0.054 3.946 5 C 0.129 3.871 6 N -0.709 5.709 7 C 0.533 3.467 8 O -0.568 6.568 9 C -0.128 4.128 10 S -0.156 6.156 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.013 3.987 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.257 1.257 19 C 0.153 3.847 20 C 0.189 3.811 21 N -0.497 5.497 22 C -0.044 4.044 23 C -0.069 4.069 24 C -0.055 4.055 25 C -0.066 4.066 26 O -0.210 6.210 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.419 0.581 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.271 0.729 40 H 0.091 0.909 41 H 0.128 0.872 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.687 -0.721 34.910 36.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.083 4.083 3 N -0.268 5.268 4 C -0.073 4.073 5 C 0.005 3.995 6 N -0.364 5.364 7 C 0.319 3.681 8 O -0.446 6.446 9 C -0.279 4.279 10 S 0.071 5.929 11 C -0.694 4.694 12 H 0.103 0.897 13 C -0.192 4.192 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.181 1.181 19 C 0.025 3.975 20 C -0.019 4.019 21 N -0.228 5.228 22 C -0.164 4.164 23 C -0.126 4.126 24 C -0.108 4.108 25 C -0.122 4.122 26 O -0.097 6.097 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.256 0.744 37 H 0.131 0.869 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.146 0.854 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.102 0.898 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.329 -1.779 34.462 35.278 hybrid contribution -2.302 0.965 -0.775 2.614 sum -9.631 -0.814 33.687 35.046 Atomic orbital electron populations 1.22348 0.96066 1.03447 1.02585 1.22218 0.94590 0.89172 1.02302 1.61855 1.60904 1.02862 1.01225 1.22208 0.98604 0.99551 0.86956 1.21148 0.99142 0.96142 0.83108 1.45559 1.43213 1.41926 1.05701 1.20087 0.80837 0.82254 0.84903 1.90702 1.33331 1.34025 1.86583 1.23360 1.05137 1.04034 0.95360 1.85634 1.54511 1.53398 0.99330 1.23216 1.27049 1.24635 0.94482 0.89746 1.26138 0.95171 0.96961 1.00918 1.70194 1.29284 1.34543 1.20826 0.84942 0.78991 0.77660 0.76301 1.19348 1.20380 1.18081 1.20548 0.98022 0.97760 0.81180 1.26268 0.90904 0.88089 0.96627 1.70327 1.14226 1.28124 1.10077 1.22125 1.00447 0.96464 0.97350 1.20200 0.91558 1.03449 0.97354 1.23963 0.90311 1.02890 0.93646 1.20480 1.05715 0.93485 0.92537 1.84387 1.45867 1.44813 1.34645 0.91363 0.91649 0.91323 0.90761 0.92093 0.90649 0.87712 0.92847 0.92758 0.74374 0.86918 0.86989 0.92032 0.89081 0.85446 0.90398 0.91240 0.88169 0.88168 0.89785 0.87226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 9.28 71.98 0.67 -1.59 16 2 C 0.04 0.75 5.74 86.30 0.50 1.24 16 3 N -0.54 -9.04 4.66 -900.81 -4.20 -13.24 16 4 C 0.05 0.75 4.94 86.30 0.43 1.18 16 5 C 0.13 2.93 5.71 86.38 0.49 3.42 16 6 N -0.71 -17.12 5.56 -463.08 -2.57 -19.69 16 7 C 0.53 19.66 7.85 87.66 0.69 20.34 16 8 O -0.57 -26.98 15.86 -3.02 -0.05 -27.03 16 9 C -0.13 -4.99 6.16 71.24 0.44 -4.55 16 10 S -0.16 -8.71 20.57 -56.49 -1.16 -9.87 16 11 C -0.55 -31.17 9.50 67.95 0.65 -30.53 16 12 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 13 C 0.01 0.73 5.49 84.86 0.47 1.19 16 14 N -0.91 -56.35 13.22 21.65 0.29 -56.06 16 15 Si 1.00 43.56 29.55 68.60 2.03 45.58 16 16 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 19 C 0.15 2.16 5.37 85.56 0.46 2.62 16 20 C 0.19 3.80 6.92 88.34 0.61 4.41 16 21 N -0.50 -11.91 11.29 -291.97 -3.30 -15.20 16 22 C -0.04 -0.86 7.11 41.26 0.29 -0.56 16 23 C -0.07 -0.84 10.05 71.24 0.72 -0.12 16 24 C -0.06 -0.91 7.39 24.79 0.18 -0.72 16 25 C -0.07 -0.44 10.04 71.23 0.72 0.27 16 26 O -0.21 -4.05 10.09 -3.78 -0.04 -4.08 16 27 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.70 6.22 -2.39 -0.01 0.68 16 29 H 0.07 0.77 6.32 -2.38 -0.02 0.76 16 30 H 0.07 1.42 6.61 -2.39 -0.02 1.40 16 31 H 0.06 1.17 6.70 -2.39 -0.02 1.16 16 32 H 0.08 0.76 5.89 -2.39 -0.01 0.74 16 33 H 0.10 1.10 7.82 -2.38 -0.02 1.08 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.05 1.39 6.72 -2.38 -0.02 1.38 16 36 H 0.42 6.59 8.47 -92.71 -0.79 5.81 16 37 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 38 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 39 H 0.27 15.52 8.31 -92.70 -0.77 14.75 16 40 H 0.09 0.88 6.02 -2.39 -0.01 0.86 16 41 H 0.13 1.51 7.86 -2.39 -0.02 1.49 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.10 0.61 7.79 -2.39 -0.02 0.60 16 45 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 46 H 0.08 0.49 8.14 -2.39 -0.02 0.48 16 47 H 0.11 0.34 7.80 -2.38 -0.02 0.33 16 Total: -1.00 -84.89 399.13 -1.50 -86.39 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.21 Total: 16.62 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 7.30 Total: -3.41 kcal Atomic # 7 Polarization: -94.42 SS G_CDS: -9.78 Total: -104.20 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.09 Total: -31.11 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.87 kcal Total: -84.89 -1.50 -86.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753078545.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.778 kcal (2) G-P(sol) polarization free energy of solvation -84.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds