Wall clock time and date at job start Sat Apr 11 2020 06:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 N 1.34773 * 120.00081 * 59.72378 * 4 2 1 6 6 O 1.21283 * 119.99503 * 239.99651 * 4 2 1 7 7 N 1.46895 * 109.47514 * 120.00767 * 2 1 3 8 8 C 1.47384 * 111.00045 * 191.39770 * 7 2 1 9 9 C 1.54065 * 106.11025 * 219.21274 * 8 7 2 10 10 H 1.08999 * 110.29050 * 270.98558 * 9 8 7 11 11 C 1.52077 * 110.11848 * 149.55712 * 9 8 7 12 12 C 1.53315 * 109.16731 * 299.46989 * 11 9 8 13 13 C 1.53038 * 107.65529 * 291.56826 * 12 11 9 14 14 N 1.44336 * 110.06705 * 52.24314 * 13 12 11 15 15 C 1.34773 * 116.00170 * 152.77978 * 14 13 12 16 16 O 1.21285 * 119.99673 * 179.56177 * 15 14 13 17 17 C 1.50693 * 119.99921 * 359.56251 * 15 14 13 18 18 S 1.81005 * 109.47227 * 179.97438 * 17 15 14 19 19 C 1.76191 * 100.00049 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00710 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99757 * 180.02562 * 19 18 17 22 22 N 1.31632 * 120.00021 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99948 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46953 * 89.99856 * 23 21 19 25 25 H 1.48492 * 109.47126 * 209.99875 * 23 21 19 26 26 H 1.48498 * 109.47182 * 330.00408 * 23 21 19 27 27 C 1.44277 * 127.37696 * 332.28696 * 14 13 12 28 28 H 1.08998 * 109.31210 * 251.49147 * 27 14 13 29 29 C 1.47234 * 111.00319 * 69.87344 * 7 2 1 30 30 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 31 31 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 32 32 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 33 33 H 0.96998 * 120.00525 * 359.97438 * 5 4 2 34 34 H 0.97000 * 119.99521 * 180.02562 * 5 4 2 35 35 H 1.08997 * 110.12462 * 338.37420 * 8 7 2 36 36 H 1.09005 * 110.12730 * 100.05752 * 8 7 2 37 37 H 1.09002 * 109.52314 * 59.37050 * 11 9 8 38 38 H 1.09003 * 109.52311 * 179.56130 * 11 9 8 39 39 H 1.08997 * 109.82572 * 51.10441 * 12 11 9 40 40 H 1.08996 * 109.82351 * 171.96885 * 12 11 9 41 41 H 1.08998 * 109.31188 * 172.32963 * 13 12 11 42 42 H 1.09002 * 109.31005 * 291.74287 * 13 12 11 43 43 H 1.08998 * 109.47507 * 299.99905 * 17 15 14 44 44 H 1.09001 * 109.47555 * 60.00354 * 17 15 14 45 45 H 0.96995 * 119.99765 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.84376 * 242.34904 * 29 7 2 47 47 H 1.09006 * 109.84595 * 3.26293 * 29 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 7 1.7021 -0.2529 -2.4546 6 8 2.7296 -1.6963 -1.1194 7 7 2.0197 -0.6926 1.1993 8 6 3.4675 -0.4813 1.3771 9 6 4.0388 -1.8258 1.8663 10 1 4.0025 -1.8785 2.9544 11 6 5.4733 -1.9895 1.3884 12 6 5.4987 -1.9682 -0.1444 13 6 4.8135 -3.2446 -0.6377 14 7 3.5160 -3.3805 -0.0202 15 6 2.5967 -4.0716 -0.7228 16 8 1.4844 -4.2366 -0.2683 17 6 2.9508 -4.6392 -2.0731 18 16 1.5172 -5.5064 -2.7579 19 6 2.1935 -6.0529 -4.2903 20 1 3.2161 -5.8163 -4.5444 21 6 1.4116 -6.7868 -5.1716 22 7 0.1647 -7.0740 -4.8627 23 14 2.1283 -7.3657 -6.7966 24 1 2.7438 -8.7052 -6.6170 25 1 1.0482 -7.4494 -7.8122 26 1 3.1629 -6.4028 -7.2523 27 6 3.0990 -2.8699 1.2632 28 1 2.9862 -3.6990 1.9617 29 6 1.7497 -2.1379 1.1212 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.1408 0.5332 -2.5436 34 1 2.0251 -0.7103 -3.2467 35 1 3.9251 -0.2024 0.4279 36 1 3.6446 0.2946 2.1219 37 1 6.0813 -1.1712 1.7741 38 1 5.8703 -2.9395 1.7462 39 1 4.9603 -1.0943 -0.5110 40 1 6.5299 -1.9415 -0.4966 41 1 4.6943 -3.1945 -1.7200 42 1 5.4317 -4.1062 -0.3855 43 1 3.2402 -3.8296 -2.7431 44 1 3.7810 -5.3376 -1.9674 45 1 -0.3816 -7.5872 -5.4783 46 1 1.0814 -2.4336 1.9299 47 1 1.2959 -2.3782 0.1597 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754871144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:48 Heat of formation + Delta-G solvation = -23.616964 kcal Electronic energy + Delta-G solvation = -30582.310686 eV Core-core repulsion = 26699.818184 eV Total energy + Delta-G solvation = -3882.492502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.43011 -39.28138 -37.70167 -36.00232 -33.84669 -33.23507 -32.37336 -32.20728 -29.88956 -28.71937 -27.42794 -25.41793 -25.08915 -24.08659 -22.79988 -21.86622 -19.90091 -19.63095 -18.48232 -17.65953 -17.38133 -16.94524 -16.30147 -15.99476 -15.76264 -15.23103 -14.87774 -14.75606 -14.58166 -14.14049 -13.80989 -13.72007 -13.54925 -13.23273 -12.93566 -12.84039 -12.53237 -12.47773 -12.21478 -12.04286 -11.70201 -11.61036 -11.33462 -11.20967 -11.07541 -11.02810 -10.94988 -10.70556 -10.64950 -10.51570 -10.48727 -9.98145 -9.70733 -9.48369 -9.00995 -8.92247 -8.14083 -8.09080 -7.83063 -6.39362 -6.15868 -3.83932 2.68999 3.18686 3.24162 3.30659 3.37608 3.51953 3.61591 3.82381 3.96264 4.27632 4.44098 4.55891 4.75042 4.88863 4.94681 5.00890 5.03770 5.12044 5.18789 5.30093 5.36585 5.41267 5.47728 5.51860 5.64150 5.68670 5.73740 5.75889 5.77316 5.90294 5.99270 5.99775 6.05100 6.09553 6.16516 6.24712 6.36415 6.38427 6.40579 6.90422 6.93741 6.99694 7.34962 7.41948 7.64909 7.94634 8.40390 8.41159 8.98342 9.29390 10.91470 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.003896 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.480239 B = 7185.427541 C = 7796.529104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.060 3.940 3 H 0.098 0.902 4 C 0.474 3.526 5 N -0.855 5.855 6 O -0.507 6.507 7 N -0.507 5.507 8 C 0.048 3.952 9 C -0.096 4.096 10 H 0.085 0.915 11 C -0.109 4.109 12 C -0.129 4.129 13 C 0.130 3.870 14 N -0.564 5.564 15 C 0.546 3.454 16 O -0.533 6.533 17 C -0.142 4.142 18 S -0.066 6.066 19 C -0.531 4.531 20 H 0.069 0.931 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.915 3.085 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.273 1.273 27 C 0.161 3.839 28 H 0.062 0.938 29 C 0.030 3.970 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.394 0.606 34 H 0.401 0.599 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.267 0.733 46 H 0.071 0.929 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.408 18.646 11.099 23.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 H 0.116 0.884 4 C 0.257 3.743 5 N -0.419 5.419 6 O -0.382 6.382 7 N -0.230 5.230 8 C -0.080 4.080 9 C -0.116 4.116 10 H 0.103 0.897 11 C -0.147 4.147 12 C -0.167 4.167 13 C 0.007 3.993 14 N -0.298 5.298 15 C 0.334 3.666 16 O -0.411 6.411 17 C -0.292 4.292 18 S 0.161 5.839 19 C -0.680 4.680 20 H 0.088 0.912 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.742 3.258 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.198 1.198 27 C 0.056 3.944 28 H 0.080 0.920 29 C -0.097 4.097 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.222 0.778 34 H 0.232 0.768 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.822 17.930 12.472 22.882 hybrid contribution 2.069 -0.199 -2.793 3.482 sum 8.891 17.731 9.679 22.071 Atomic orbital electron populations 1.21764 0.92023 1.03600 1.02362 1.21990 0.97668 0.98528 0.87170 0.88374 1.22021 0.80932 0.85473 0.85921 1.44039 1.55571 1.33726 1.08543 1.91060 1.36872 1.24119 1.86121 1.63671 1.14625 1.11946 1.32758 1.22928 0.87531 0.97114 1.00420 1.21706 0.94988 0.94597 1.00294 0.89659 1.21295 0.95262 1.02005 0.96155 1.21913 1.00143 0.99130 0.95484 1.20903 0.83759 0.96322 0.98356 1.46201 1.12070 1.53573 1.17915 1.19920 0.84251 0.76740 0.85639 1.90596 1.21395 1.58866 1.70197 1.23521 1.06027 1.02901 0.96801 1.85288 1.12271 1.66631 1.19703 1.22873 1.00901 1.40049 1.04145 0.91250 1.24966 0.94687 0.95409 0.98495 1.70028 1.06780 1.37147 1.36475 0.86222 0.78611 0.79097 0.81881 1.20310 1.20827 1.19799 1.20737 0.93670 0.95348 0.84649 0.91994 1.23441 0.97039 0.84275 1.04985 0.90870 0.92042 0.91458 0.77796 0.76846 0.92504 0.90909 0.91739 0.91553 0.90653 0.91427 0.90453 0.93603 0.89498 0.90386 0.92348 0.91040 0.87442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.12 37.16 0.34 -1.05 16 2 C 0.06 0.63 2.61 -68.87 -0.18 0.45 16 3 H 0.10 0.82 8.06 -51.93 -0.42 0.41 16 4 C 0.47 5.89 6.07 -10.98 -0.07 5.82 16 5 N -0.85 -8.46 8.76 31.22 0.27 -8.18 16 6 O -0.51 -7.67 6.29 5.55 0.03 -7.64 16 7 N -0.51 -6.09 5.09 -225.90 -1.15 -7.24 16 8 C 0.05 0.50 5.51 -3.00 -0.02 0.49 16 9 C -0.10 -1.06 3.22 -90.60 -0.29 -1.35 16 10 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.11 -1.05 5.45 -27.04 -0.15 -1.20 16 12 C -0.13 -1.38 5.79 -26.55 -0.15 -1.54 16 13 C 0.13 1.79 4.60 -5.18 -0.02 1.76 16 14 N -0.56 -9.03 1.60 -168.76 -0.27 -9.30 16 15 C 0.55 11.14 5.00 -10.99 -0.05 11.09 16 16 O -0.53 -12.54 13.12 5.55 0.07 -12.47 16 17 C -0.14 -3.12 4.56 36.00 0.16 -2.96 16 18 S -0.07 -1.84 20.57 -107.50 -2.21 -4.06 16 19 C -0.53 -15.50 9.50 30.94 0.29 -15.21 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.58 13.22 55.49 0.73 -25.85 16 23 Si 0.92 21.75 29.55 -169.99 -5.02 16.73 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C 0.16 2.35 2.92 -68.57 -0.20 2.15 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 C 0.03 0.45 4.29 -3.04 -0.01 0.44 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.48 7.55 -51.93 -0.39 0.09 16 32 H 0.07 0.87 7.13 -51.93 -0.37 0.50 16 33 H 0.39 2.66 8.23 -40.82 -0.34 2.33 16 34 H 0.40 4.31 8.93 -40.82 -0.36 3.94 16 35 H 0.06 0.63 4.36 -51.93 -0.23 0.40 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.08 0.88 4.78 -51.93 -0.25 0.64 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.15 5.87 -51.93 -0.30 0.85 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.09 1.85 7.15 -51.92 -0.37 1.48 16 44 H 0.08 1.65 7.98 -51.91 -0.41 1.24 16 45 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.11 1.98 2.80 -51.93 -0.15 1.83 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -34.99 355.85 -9.56 -44.55 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -6.94 Total: 7.17 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -0.45 Total: 0.92 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: -0.41 Total: -50.57 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: 0.11 Total: -20.10 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -2.21 Total: -4.06 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.99 -9.56 -44.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754871144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.936 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds