Wall clock time and date at job start Sat Apr 11 2020 06:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00018 * 2 1 4 4 C 1.50700 * 109.47643 * 275.00370 * 3 2 1 5 5 C 1.34855 * 125.95816 * 94.99830 * 4 3 2 6 6 N 1.36318 * 106.68627 * 179.97438 * 5 4 3 7 7 C 1.35484 * 107.37846 * 0.03689 * 6 5 4 8 8 N 1.30032 * 108.62861 * 359.96985 * 7 6 5 9 9 C 1.51046 * 123.93246 * 179.83417 * 7 6 5 10 10 C 1.53401 * 108.24808 * 344.12000 * 9 7 6 11 11 C 1.53151 * 109.23840 * 48.79581 * 10 9 7 12 12 C 1.46464 * 127.77944 * 180.02562 * 6 5 4 13 13 S 1.65602 * 119.99988 * 180.02562 * 2 1 3 14 14 O 1.42100 * 104.28017 * 26.06816 * 13 2 1 15 15 O 1.42103 * 104.27827 * 153.92592 * 13 2 1 16 16 C 1.81399 * 104.44779 * 269.99502 * 13 2 1 17 17 C 1.53003 * 109.47079 * 179.97438 * 16 13 2 18 18 C 1.53004 * 109.47068 * 179.97438 * 17 16 13 19 19 C 1.50701 * 109.46854 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00297 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99724 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00088 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46766 * 89.99783 * 23 21 19 25 25 H 1.48492 * 109.47123 * 209.99741 * 23 21 19 26 26 H 1.48499 * 109.47080 * 329.99794 * 23 21 19 27 27 H 1.08994 * 109.47287 * 89.99587 * 1 2 3 28 28 H 1.09003 * 109.47113 * 209.99617 * 1 2 3 29 29 H 1.08997 * 109.46853 * 329.99035 * 1 2 3 30 30 H 1.09007 * 109.46978 * 155.00261 * 3 2 1 31 31 H 1.08994 * 109.46846 * 35.01057 * 3 2 1 32 32 H 1.08004 * 126.65789 * 359.97438 * 5 4 3 33 33 H 1.09002 * 109.71730 * 224.41728 * 9 7 6 34 34 H 1.09001 * 109.71219 * 103.81903 * 9 7 6 35 35 H 1.08999 * 109.50390 * 168.72357 * 10 9 7 36 36 H 1.08996 * 109.50766 * 288.86649 * 10 9 7 37 37 H 1.09000 * 109.47006 * 50.52172 * 11 10 9 38 38 H 1.09001 * 109.46342 * 170.50333 * 11 10 9 39 39 H 1.09004 * 109.58273 * 43.06582 * 12 6 5 40 40 H 1.09001 * 109.58549 * 282.65636 * 12 6 5 41 41 H 1.08999 * 109.47302 * 299.99985 * 16 13 2 42 42 H 1.08991 * 109.47192 * 60.00257 * 16 13 2 43 43 H 1.08999 * 109.47047 * 300.00149 * 17 16 13 44 44 H 1.08999 * 109.46912 * 60.00362 * 17 16 13 45 45 H 1.08996 * 109.46824 * 299.99918 * 18 17 16 46 46 H 1.09001 * 109.46876 * 59.99855 * 18 17 16 47 47 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7658 -1.4153 5 6 1.5261 2.6449 -2.0326 6 7 2.0165 2.8152 -3.2931 7 6 3.1171 2.0335 -3.4080 8 7 3.3037 1.4106 -2.2820 9 6 3.9538 1.9346 -4.6617 10 6 3.1428 2.5144 -5.8275 11 6 2.5707 3.8745 -5.4171 12 6 1.4842 3.6721 -4.3549 13 16 2.2930 -1.4342 -0.0006 14 8 1.3969 -2.3559 -0.6062 15 8 3.5395 -1.1189 -0.6058 16 6 2.5194 -1.8268 1.7558 17 6 3.2809 -3.1472 1.8892 18 6 3.4725 -3.4780 3.3707 19 6 4.2231 -4.7782 3.5020 20 1 4.5322 -5.3150 2.6173 21 6 4.5143 -5.2829 4.7516 22 7 4.1374 -4.6293 5.8289 23 14 5.4441 -6.8948 4.9145 24 1 6.9032 -6.6223 4.9575 25 1 5.0314 -7.5801 6.1655 26 1 5.1368 -7.7634 3.7498 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 3.1858 1.1176 0.4343 31 1 1.6502 2.0042 0.5896 32 1 0.6538 3.1217 -1.6103 33 1 4.1924 0.8902 -4.8632 34 1 4.8745 2.5042 -4.5351 35 1 3.7906 2.6388 -6.6952 36 1 2.3265 1.8361 -6.0759 37 1 3.3678 4.4956 -5.0086 38 1 2.1389 4.3651 -6.2895 39 1 1.1981 4.6372 -3.9366 40 1 0.6145 3.1956 -4.8074 41 1 3.0867 -1.0296 2.2362 42 1 1.5453 -1.9196 2.2358 43 1 2.7132 -3.9441 1.4089 44 1 4.2551 -3.0548 1.4090 45 1 4.0404 -2.6810 3.8504 46 1 2.4984 -3.5702 3.8512 47 1 4.3426 -4.9842 6.7080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370438623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:20 Heat of formation + Delta-G solvation = -23.551537 kcal Electronic energy + Delta-G solvation = -27676.495030 eV Core-core repulsion = 23794.005365 eV Total energy + Delta-G solvation = -3882.489664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.43910 -37.32653 -36.66775 -35.96140 -35.41064 -34.55802 -33.43157 -32.10420 -30.69232 -28.98259 -27.71427 -27.46064 -25.15210 -23.88435 -23.49504 -22.53734 -20.64965 -20.37983 -19.30514 -18.49580 -17.24829 -17.11266 -16.56979 -16.32974 -15.97598 -15.68548 -14.88524 -14.79685 -14.66731 -14.49096 -14.39496 -14.13504 -13.90679 -13.81629 -13.65145 -12.88325 -12.66412 -12.48973 -12.23752 -12.18301 -12.10263 -11.74648 -11.61272 -11.56445 -11.54013 -11.43077 -11.32196 -11.27957 -11.07291 -10.86799 -10.75686 -10.32075 -9.86911 -9.85913 -9.62945 -9.43366 -9.16705 -8.86162 -8.35489 -8.35050 -6.00141 -4.02691 0.62984 1.88533 2.56504 2.79947 3.26836 3.34754 3.40402 3.45058 3.97228 4.11277 4.17879 4.25556 4.28091 4.47704 4.53941 4.62610 4.72663 4.79823 4.90701 4.93919 5.06564 5.16635 5.21710 5.27287 5.30072 5.33431 5.36452 5.41433 5.48654 5.52726 5.55932 5.70139 5.73332 5.76189 5.97479 6.05008 6.19148 6.36441 6.56247 6.59577 6.67631 6.96754 7.06087 7.64097 7.74784 7.98507 8.13812 8.39630 9.03619 9.61555 11.11129 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024804 B = 0.002209 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.567966 B =12673.210618 C =13181.359880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.002 6.002 3 C 0.210 3.790 4 C -0.016 4.016 5 C -0.043 4.043 6 N -0.461 5.461 7 C 0.201 3.799 8 N -0.450 5.450 9 C -0.035 4.035 10 C -0.126 4.126 11 C -0.135 4.135 12 C 0.104 3.896 13 S 2.592 3.408 14 O -0.965 6.965 15 O -0.933 6.933 16 C -0.613 4.613 17 C -0.105 4.105 18 C 0.031 3.969 19 C -0.524 4.524 20 H 0.058 0.942 21 C 0.056 3.944 22 N -0.896 5.896 23 Si 0.894 3.106 24 H -0.280 1.280 25 H -0.286 1.286 26 H -0.273 1.273 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.172 0.828 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.735 22.930 -21.144 32.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.838 5.838 3 C 0.084 3.916 4 C -0.147 4.147 5 C -0.177 4.177 6 N -0.145 5.145 7 C -0.061 4.061 8 N -0.167 5.167 9 C -0.073 4.073 10 C -0.164 4.164 11 C -0.172 4.172 12 C -0.018 4.018 13 S 2.688 3.312 14 O -0.956 6.956 15 O -0.923 6.923 16 C -0.744 4.744 17 C -0.144 4.144 18 C -0.008 4.008 19 C -0.563 4.563 20 H 0.076 0.924 21 C -0.145 4.145 22 N -0.535 5.535 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.212 1.212 26 H -0.198 1.198 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.189 0.811 33 H 0.114 0.886 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.038 0.962 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.939 22.023 -21.663 31.896 hybrid contribution -0.535 0.007 0.796 0.959 sum -8.474 22.030 -20.867 31.505 Atomic orbital electron populations 1.21377 0.78927 1.02674 1.01766 1.57728 1.14792 1.21310 1.89957 1.19355 0.97311 0.85000 0.89927 1.21128 0.95041 1.00464 0.98101 1.22266 1.03274 1.06503 0.85648 1.45415 1.23033 1.34732 1.11286 1.23397 0.90489 0.94868 0.97389 1.70145 1.24531 1.22492 0.99573 1.20188 0.96320 1.03720 0.87116 1.21683 1.00464 0.96086 0.98145 1.21898 0.98362 0.98641 0.98314 1.21945 0.97600 0.94564 0.87727 1.05770 0.74250 0.72832 0.78353 1.93543 1.65210 1.62417 1.74395 1.93651 1.43063 1.82085 1.73477 1.30633 1.10284 1.09328 1.24166 1.21477 0.98220 0.90684 1.04046 1.19064 0.97325 0.96720 0.87670 1.21273 1.36051 1.06575 0.92358 0.92371 1.25028 0.95969 0.97566 0.95913 1.69965 1.46795 1.39054 0.97697 0.86551 0.80100 0.83602 0.77531 1.20569 1.21223 1.19754 0.93088 0.91039 0.91288 0.88658 0.89248 0.81056 0.88554 0.89309 0.89953 0.91160 0.90567 0.89411 0.89397 0.89979 0.85561 0.85821 0.91788 0.91572 0.96116 0.96188 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.01 10.24 59.85 0.61 1.62 16 2 N -1.00 -13.05 3.10 -123.06 -0.38 -13.43 16 3 C 0.21 2.48 5.81 -5.19 -0.03 2.45 16 4 C -0.02 -0.21 6.68 -82.72 -0.55 -0.77 16 5 C -0.04 -0.44 11.55 -16.76 -0.19 -0.63 16 6 N -0.46 -4.50 3.14 -113.74 -0.36 -4.85 16 7 C 0.20 2.49 7.65 -155.23 -1.19 1.30 16 8 N -0.45 -7.16 11.11 -6.88 -0.08 -7.24 16 9 C -0.03 -0.30 6.33 -27.51 -0.17 -0.47 16 10 C -0.13 -0.68 5.96 -26.45 -0.16 -0.84 16 11 C -0.13 -0.56 5.94 -26.50 -0.16 -0.72 16 12 C 0.10 0.56 6.98 -3.91 -0.03 0.53 16 13 S 2.59 43.99 5.32 -107.50 -0.57 43.42 16 14 O -0.97 -19.01 17.09 -57.54 -0.98 -19.99 16 15 O -0.93 -18.57 16.86 -57.54 -0.97 -19.54 16 16 C -0.61 -10.34 6.18 37.16 0.23 -10.11 16 17 C -0.10 -2.27 5.16 -26.73 -0.14 -2.41 16 18 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 19 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 20 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 23 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 29 H 0.07 0.48 7.94 -51.93 -0.41 0.07 16 30 H 0.10 1.19 7.61 -51.92 -0.40 0.79 16 31 H 0.09 0.71 7.96 -51.93 -0.41 0.29 16 32 H 0.17 1.16 8.06 -52.48 -0.42 0.74 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 37 H 0.08 0.35 8.12 -51.93 -0.42 -0.08 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.13 1.91 8.14 -51.92 -0.42 1.48 16 42 H 0.12 1.86 8.14 -51.93 -0.42 1.44 16 43 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -39.72 396.28 -11.91 -51.63 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.93 Total: -3.28 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: -2.33 Total: -23.36 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: -0.08 Total: -51.91 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -1.95 Total: -39.53 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 43.99 SS G_CDS: -0.57 Total: 43.42 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.72 -11.91 -51.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370438623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.078 kcal (2) G-P(sol) polarization free energy of solvation -39.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds