Wall clock time and date at job start Sat Apr 11 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00018 * 2 1 4 4 C 1.50700 * 109.47643 * 275.00370 * 3 2 1 5 5 C 1.34855 * 125.95816 * 94.99830 * 4 3 2 6 6 N 1.36318 * 106.68627 * 179.97438 * 5 4 3 7 7 C 1.35484 * 107.37846 * 0.03689 * 6 5 4 8 8 N 1.30032 * 108.62861 * 359.96985 * 7 6 5 9 9 C 1.51046 * 123.93246 * 179.83417 * 7 6 5 10 10 C 1.53401 * 108.24808 * 344.12000 * 9 7 6 11 11 C 1.53151 * 109.23840 * 48.79581 * 10 9 7 12 12 C 1.46464 * 127.77944 * 180.02562 * 6 5 4 13 13 S 1.65602 * 119.99988 * 180.02562 * 2 1 3 14 14 O 1.42100 * 104.28017 * 26.06816 * 13 2 1 15 15 O 1.42103 * 104.27827 * 153.92592 * 13 2 1 16 16 C 1.81399 * 104.44779 * 269.99502 * 13 2 1 17 17 C 1.53003 * 109.47079 * 179.97438 * 16 13 2 18 18 C 1.53004 * 109.47068 * 179.97438 * 17 16 13 19 19 C 1.50701 * 109.46854 * 180.02562 * 18 17 16 20 20 H 1.07998 * 120.00297 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99724 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99888 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00088 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46766 * 89.99783 * 23 21 19 25 25 H 1.48492 * 109.47123 * 209.99741 * 23 21 19 26 26 H 1.48499 * 109.47080 * 329.99794 * 23 21 19 27 27 H 1.08994 * 109.47287 * 89.99587 * 1 2 3 28 28 H 1.09003 * 109.47113 * 209.99617 * 1 2 3 29 29 H 1.08997 * 109.46853 * 329.99035 * 1 2 3 30 30 H 1.09007 * 109.46978 * 155.00261 * 3 2 1 31 31 H 1.08994 * 109.46846 * 35.01057 * 3 2 1 32 32 H 1.08004 * 126.65789 * 359.97438 * 5 4 3 33 33 H 1.09002 * 109.71730 * 224.41728 * 9 7 6 34 34 H 1.09001 * 109.71219 * 103.81903 * 9 7 6 35 35 H 1.08999 * 109.50390 * 168.72357 * 10 9 7 36 36 H 1.08996 * 109.50766 * 288.86649 * 10 9 7 37 37 H 1.09000 * 109.47006 * 50.52172 * 11 10 9 38 38 H 1.09001 * 109.46342 * 170.50333 * 11 10 9 39 39 H 1.09004 * 109.58273 * 43.06582 * 12 6 5 40 40 H 1.09001 * 109.58549 * 282.65636 * 12 6 5 41 41 H 1.08999 * 109.47302 * 299.99985 * 16 13 2 42 42 H 1.08991 * 109.47192 * 60.00257 * 16 13 2 43 43 H 1.08999 * 109.47047 * 300.00149 * 17 16 13 44 44 H 1.08999 * 109.46912 * 60.00362 * 17 16 13 45 45 H 1.08996 * 109.46824 * 299.99918 * 18 17 16 46 46 H 1.09001 * 109.46876 * 59.99855 * 18 17 16 47 47 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3414 1.7658 -1.4153 5 6 1.5261 2.6449 -2.0326 6 7 2.0165 2.8152 -3.2931 7 6 3.1171 2.0335 -3.4080 8 7 3.3037 1.4106 -2.2820 9 6 3.9538 1.9346 -4.6617 10 6 3.1428 2.5144 -5.8275 11 6 2.5707 3.8745 -5.4171 12 6 1.4842 3.6721 -4.3549 13 16 2.2930 -1.4342 -0.0006 14 8 1.3969 -2.3559 -0.6062 15 8 3.5395 -1.1189 -0.6058 16 6 2.5194 -1.8268 1.7558 17 6 3.2809 -3.1472 1.8892 18 6 3.4725 -3.4780 3.3707 19 6 4.2231 -4.7782 3.5020 20 1 4.5322 -5.3150 2.6173 21 6 4.5143 -5.2829 4.7516 22 7 4.1374 -4.6293 5.8289 23 14 5.4441 -6.8948 4.9145 24 1 6.9032 -6.6223 4.9575 25 1 5.0314 -7.5801 6.1655 26 1 5.1368 -7.7634 3.7498 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5140 30 1 3.1858 1.1176 0.4343 31 1 1.6502 2.0042 0.5896 32 1 0.6538 3.1217 -1.6103 33 1 4.1924 0.8902 -4.8632 34 1 4.8745 2.5042 -4.5351 35 1 3.7906 2.6388 -6.6952 36 1 2.3265 1.8361 -6.0759 37 1 3.3678 4.4956 -5.0086 38 1 2.1389 4.3651 -6.2895 39 1 1.1981 4.6372 -3.9366 40 1 0.6145 3.1956 -4.8074 41 1 3.0867 -1.0296 2.2362 42 1 1.5453 -1.9196 2.2358 43 1 2.7132 -3.9441 1.4089 44 1 4.2551 -3.0548 1.4090 45 1 4.0404 -2.6810 3.8504 46 1 2.4984 -3.5702 3.8512 47 1 4.3426 -4.9842 6.7080 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370438623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:19 Heat of formation + Delta-G solvation = -50.993211 kcal Electronic energy + Delta-G solvation = -27677.684990 eV Core-core repulsion = 23794.005365 eV Total energy + Delta-G solvation = -3883.679625 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.20116 -38.18282 -37.95158 -36.96469 -36.69148 -36.45947 -34.16743 -34.11560 -31.42195 -29.67446 -29.64494 -28.21895 -26.04746 -25.48200 -24.48485 -23.10446 -22.35298 -21.40889 -19.92514 -19.76476 -18.64332 -18.39813 -17.80198 -17.39950 -17.15875 -16.82252 -16.49176 -16.10292 -15.61425 -15.36594 -15.30556 -15.06092 -14.69633 -14.51143 -14.47441 -14.32724 -14.10086 -13.85691 -13.55014 -13.39914 -13.21112 -13.07700 -12.97495 -12.78528 -12.75956 -12.62080 -12.55387 -12.36589 -12.11123 -12.05449 -11.92292 -11.85973 -11.77127 -11.38636 -11.08595 -10.73314 -10.58209 -10.41761 -10.00016 -9.16287 -8.23234 -6.34428 -0.71951 1.11055 1.39187 1.40587 1.52012 1.70706 1.95759 2.28547 2.39584 2.91010 3.09692 3.23087 3.40720 3.63899 3.68305 3.75598 3.81341 3.91722 3.91931 4.17263 4.29558 4.36719 4.37923 4.41177 4.45070 4.54916 4.61740 4.70219 4.74468 4.78676 4.83867 4.91649 4.95883 4.97506 5.01185 5.02129 5.06865 5.16146 5.27296 5.43612 5.44473 5.61035 5.68280 5.78133 5.87567 6.19001 6.35566 6.80327 7.32092 7.34500 8.88293 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.024804 B = 0.002209 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.567966 B =12673.210618 C =13181.359880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.993 5.993 3 C 0.205 3.795 4 C -0.058 4.058 5 C -0.025 4.025 6 N -0.457 5.457 7 C 0.181 3.819 8 N -0.514 5.514 9 C -0.039 4.039 10 C -0.119 4.119 11 C -0.130 4.130 12 C 0.095 3.905 13 S 2.610 3.390 14 O -0.997 6.997 15 O -0.968 6.968 16 C -0.608 4.608 17 C -0.105 4.105 18 C 0.033 3.967 19 C -0.554 4.554 20 H 0.058 0.942 21 C 0.002 3.998 22 N -0.929 5.929 23 Si 0.965 3.035 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.266 1.266 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.212 0.788 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.003 0.997 46 H 0.004 0.996 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.248 24.888 -22.080 34.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.831 5.831 3 C 0.080 3.920 4 C -0.188 4.188 5 C -0.160 4.160 6 N -0.140 5.140 7 C -0.082 4.082 8 N -0.233 5.233 9 C -0.078 4.078 10 C -0.157 4.157 11 C -0.167 4.167 12 C -0.025 4.025 13 S 2.706 3.294 14 O -0.987 6.987 15 O -0.958 6.958 16 C -0.738 4.738 17 C -0.144 4.144 18 C -0.006 4.006 19 C -0.592 4.592 20 H 0.076 0.924 21 C -0.196 4.196 22 N -0.568 5.568 23 Si 0.789 3.211 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.190 1.190 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.130 0.870 30 H 0.097 0.903 31 H 0.153 0.847 32 H 0.228 0.772 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.135 0.865 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.162 0.838 42 H 0.162 0.838 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.022 0.978 46 H 0.023 0.977 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.458 23.989 -22.625 34.305 hybrid contribution -0.111 -0.503 1.064 1.182 sum -9.569 23.486 -21.561 33.287 Atomic orbital electron populations 1.21674 0.76854 1.04806 1.02215 1.57367 1.15928 1.20237 1.89589 1.19648 0.97191 0.84955 0.90246 1.21464 0.96046 1.02495 0.98791 1.22812 1.03082 1.04743 0.85397 1.45707 1.22030 1.34227 1.12012 1.23846 0.91740 0.95169 0.97476 1.70054 1.26847 1.24805 1.01581 1.20323 0.96896 1.03088 0.87461 1.21672 1.00183 0.96632 0.97240 1.21919 0.98054 0.97691 0.99025 1.22346 0.98170 0.94959 0.87072 1.04925 0.73423 0.73291 0.77740 1.93491 1.65778 1.64354 1.75102 1.93605 1.45143 1.82831 1.74250 1.30547 1.10979 1.07229 1.25080 1.21299 0.98977 0.93375 1.00790 1.18955 0.95795 0.95403 0.90415 1.21727 1.36794 1.07890 0.92778 0.92365 1.25957 0.96786 1.01386 0.95497 1.70074 1.47692 1.40804 0.98264 0.85450 0.78818 0.78958 0.77876 1.19658 1.20281 1.19018 0.93535 0.91114 0.86966 0.90349 0.84678 0.77164 0.90351 0.88869 0.87980 0.91730 0.90864 0.86457 0.86999 0.88787 0.83798 0.83751 0.91945 0.91938 0.97821 0.97716 0.92566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.62 10.24 127.77 1.31 2.93 16 2 N -0.99 -24.79 3.10 -543.24 -1.68 -26.47 16 3 C 0.21 4.59 5.81 85.63 0.50 5.09 16 4 C -0.06 -1.50 6.68 41.41 0.28 -1.23 16 5 C -0.02 -0.45 11.55 83.22 0.96 0.51 16 6 N -0.46 -8.11 3.14 -513.76 -1.61 -9.73 16 7 C 0.18 4.51 7.65 138.23 1.06 5.57 16 8 N -0.51 -16.92 11.11 -175.68 -1.95 -18.87 16 9 C -0.04 -0.69 6.33 30.09 0.19 -0.50 16 10 C -0.12 -1.12 5.96 30.78 0.18 -0.93 16 11 C -0.13 -0.71 5.94 30.74 0.18 -0.53 16 12 C 0.10 0.72 6.98 86.48 0.60 1.33 16 13 S 2.61 90.00 5.32 -56.49 -0.30 89.69 16 14 O -1.00 -39.99 17.09 -127.65 -2.18 -42.17 16 15 O -0.97 -40.27 16.86 -127.65 -2.15 -42.42 16 16 C -0.61 -20.55 6.18 71.98 0.44 -20.11 16 17 C -0.11 -4.67 5.16 30.60 0.16 -4.51 16 18 C 0.03 1.76 4.97 29.85 0.15 1.91 16 19 C -0.55 -32.80 9.11 25.60 0.23 -32.57 16 20 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 21 C 0.00 0.12 5.46 84.65 0.46 0.58 16 22 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 23 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.31 7.79 -2.39 -0.02 1.29 16 29 H 0.11 1.08 7.94 -2.39 -0.02 1.06 16 30 H 0.08 1.98 7.61 -2.38 -0.02 1.96 16 31 H 0.14 1.68 7.96 -2.39 -0.02 1.66 16 32 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.06 0.69 8.12 -2.39 -0.02 0.67 16 37 H 0.07 0.48 8.12 -2.39 -0.02 0.46 16 38 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.14 4.32 8.14 -2.39 -0.02 4.30 16 42 H 0.14 4.24 8.14 -2.40 -0.02 4.22 16 43 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 44 H 0.06 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 47 H 0.27 15.19 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -90.13 396.28 0.08 -90.05 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.94 Total: 11.45 kcal Atomic # 6 Polarization: -49.17 SS G_CDS: 6.71 Total: -42.46 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -4.96 Total: -111.64 kcal Atomic # 8 Polarization: -80.26 SS G_CDS: -4.33 Total: -84.59 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 16 Polarization: 90.00 SS G_CDS: -0.30 Total: 89.69 kcal Total: -90.13 0.08 -90.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370438623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.058 kcal (2) G-P(sol) polarization free energy of solvation -90.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds