Wall clock time and date at job start Sat Apr 11 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34522 * 126.74351 * 2 1 4 4 N 1.30669 * 108.29317 * 179.97438 * 3 2 1 5 5 C 1.33972 * 109.78533 * 359.97438 * 4 3 2 6 6 C 1.48415 * 125.65461 * 179.97438 * 5 4 3 7 7 C 1.39387 * 120.08554 * 180.02562 * 6 5 4 8 8 C 1.38040 * 120.02056 * 180.02562 * 7 6 5 9 9 C 1.38228 * 120.18991 * 359.97438 * 8 7 6 10 10 C 1.38914 * 120.17181 * 0.02562 * 9 8 7 11 11 N 1.39968 * 120.00635 * 179.97438 * 10 9 8 12 12 C 1.34777 * 119.99772 * 143.52733 * 11 10 9 13 13 O 1.21583 * 120.00001 * 4.76226 * 12 11 10 14 14 N 1.34775 * 119.99876 * 184.76696 * 12 11 10 15 15 C 1.46496 * 119.99848 * 180.27055 * 14 12 11 16 16 C 1.53006 * 109.47107 * 175.20012 * 15 14 12 17 17 C 1.50694 * 115.54803 * 56.20511 * 16 15 14 18 18 H 1.08003 * 120.00332 * 271.23096 * 17 16 15 19 19 C 1.37883 * 119.99997 * 91.23551 * 17 16 15 20 20 N 1.31516 * 119.99735 * 3.90948 * 19 17 16 21 21 Si 1.86797 * 120.00158 * 183.90537 * 19 17 16 22 22 H 1.48505 * 109.46913 * 89.99774 * 21 19 17 23 23 H 1.48494 * 109.47207 * 209.99709 * 21 19 17 24 24 H 1.48502 * 109.47137 * 330.00404 * 21 19 17 25 25 C 1.53009 * 117.49715 * 270.53802 * 16 15 14 26 26 C 1.52998 * 117.49859 * 201.87799 * 16 15 14 27 27 C 1.38684 * 119.98266 * 0.23472 * 10 9 8 28 28 N 1.31500 * 108.69412 * 0.24690 * 5 4 3 29 29 H 1.09006 * 109.46719 * 90.00197 * 1 2 3 30 30 H 1.09002 * 109.47172 * 210.00238 * 1 2 3 31 31 H 1.08999 * 109.47485 * 330.00836 * 1 2 3 32 32 H 1.08005 * 125.84996 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.99078 * 359.97438 * 7 6 5 34 34 H 1.07994 * 119.90702 * 179.97438 * 8 7 6 35 35 H 1.07996 * 119.90668 * 180.02562 * 9 8 7 36 36 H 0.96994 * 119.99907 * 323.51889 * 11 10 9 37 37 H 0.97002 * 120.00043 * 359.97438 * 14 12 11 38 38 H 1.08993 * 109.47641 * 295.20240 * 15 14 12 39 39 H 1.09005 * 109.47266 * 55.20541 * 15 14 12 40 40 H 0.97001 * 119.99976 * 185.01230 * 20 19 17 41 41 H 1.08997 * 117.50040 * 359.97438 * 25 16 15 42 42 H 1.09000 * 117.49563 * 145.02054 * 25 16 15 43 43 H 1.08999 * 117.49638 * 214.97378 * 26 16 15 44 44 H 1.09000 * 117.49849 * 359.97438 * 26 16 15 45 45 H 1.07995 * 120.09614 * 179.74237 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2698 1.0780 0.0000 4 7 3.5093 0.6644 0.0006 5 6 3.5405 -0.6750 0.0015 6 6 4.7663 -1.5117 0.0018 7 6 4.6634 -2.9018 0.0023 8 6 5.8044 -3.6788 0.0031 9 6 7.0514 -3.0825 0.0029 10 6 7.1632 -1.6979 0.0024 11 7 8.4277 -1.0977 0.0028 12 6 8.6343 0.0389 -0.6913 13 8 7.7035 0.5899 -1.2465 14 7 9.8728 0.5647 -0.7702 15 6 10.0963 1.8033 -1.5198 16 6 11.5519 2.2447 -1.3532 17 6 12.5892 1.2278 -1.7541 18 1 12.9498 0.5105 -1.0316 19 6 13.0782 1.2132 -3.0432 20 7 12.6970 2.1339 -3.9015 21 14 14.2820 -0.1143 -3.5706 22 1 13.5316 -1.2783 -4.1067 23 1 15.1809 0.4227 -4.6236 24 1 15.0902 -0.5426 -2.4008 25 6 11.8811 3.1629 -0.1743 26 6 11.8756 3.7194 -1.6004 27 6 6.0216 -0.9104 0.0071 28 7 2.3051 -1.1253 -0.0038 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.9467 2.1085 0.0004 33 1 3.6907 -3.3711 0.0028 34 1 5.7225 -4.7556 0.0038 35 1 7.9410 -3.6948 0.0031 36 1 9.1552 -1.4998 0.5027 37 1 10.6154 0.1252 -0.3270 38 1 9.8872 1.6319 -2.5756 39 1 9.4349 2.5822 -1.1402 40 1 12.9831 2.0824 -4.8269 41 1 11.0608 3.4529 0.4822 42 1 12.8483 3.0317 0.3108 43 1 12.8392 3.9542 -2.0526 44 1 11.0517 4.3752 -1.8821 45 1 6.1064 0.1662 0.0109 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373931815.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:24 Heat of formation + Delta-G solvation = 99.276034 kcal Electronic energy + Delta-G solvation = -28172.990535 eV Core-core repulsion = 24192.675873 eV Total energy + Delta-G solvation = -3980.314661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.04501 -41.57509 -39.73518 -38.48114 -35.96411 -35.08873 -34.92589 -33.91059 -32.77962 -31.69009 -30.47880 -28.00295 -27.92592 -26.99761 -24.60386 -23.93652 -22.93095 -22.69333 -21.74889 -21.50712 -21.16112 -19.30436 -18.79977 -18.00126 -17.49161 -17.13001 -16.96253 -16.72393 -16.59248 -16.12142 -16.08207 -15.67352 -15.21973 -15.05068 -14.92828 -14.45269 -14.39781 -14.32308 -13.99026 -13.84556 -13.53225 -13.43409 -12.93622 -12.81264 -12.78582 -12.64267 -12.45390 -12.33685 -11.98392 -11.60346 -11.37250 -11.17840 -11.02627 -10.96359 -10.94305 -10.81454 -10.39262 -10.09315 -9.85465 -9.52006 -9.03494 -8.07681 -6.21613 -0.15684 0.41310 0.81320 1.40773 1.44420 1.46546 1.54400 1.68048 1.90439 2.19855 2.44392 2.96420 3.01420 3.20049 3.27444 3.48467 3.61934 3.92237 4.06198 4.21215 4.26600 4.31670 4.37251 4.43265 4.56541 4.59792 4.64941 4.68788 4.69326 4.74718 4.87406 5.00789 5.05181 5.15000 5.24167 5.32095 5.37977 5.41513 5.53170 5.55380 5.57548 5.65663 5.75045 5.79188 5.90560 6.05335 6.10057 6.38424 6.86276 7.03936 7.13439 7.47886 7.58922 8.99400 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015402 B = 0.002371 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.532777 B =11807.152180 C =12901.554704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.383 5.383 3 C 0.261 3.739 4 N -0.580 5.580 5 C 0.248 3.752 6 C -0.023 4.023 7 C -0.106 4.106 8 C -0.093 4.093 9 C -0.123 4.123 10 C 0.149 3.851 11 N -0.674 5.674 12 C 0.694 3.306 13 O -0.622 6.622 14 N -0.706 5.706 15 C 0.198 3.802 16 C 0.000 4.000 17 C -0.500 4.500 18 H 0.067 0.933 19 C 0.022 3.978 20 N -0.908 5.908 21 Si 0.950 3.050 22 H -0.281 1.281 23 H -0.293 1.293 24 H -0.261 1.261 25 C -0.180 4.180 26 C -0.148 4.148 27 C -0.100 4.100 28 N -0.329 5.329 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.267 0.733 33 H 0.140 0.860 34 H 0.171 0.829 35 H 0.161 0.839 36 H 0.424 0.576 37 H 0.410 0.590 38 H 0.023 0.977 39 H 0.039 0.961 40 H 0.258 0.742 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.335 -9.386 11.593 26.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.174 5.174 3 C -0.035 4.035 4 N -0.307 5.307 5 C -0.031 4.031 6 C -0.026 4.026 7 C -0.127 4.127 8 C -0.111 4.111 9 C -0.144 4.144 10 C 0.054 3.946 11 N -0.324 5.324 12 C 0.394 3.606 13 O -0.502 6.502 14 N -0.359 5.359 15 C 0.073 3.927 16 C -0.001 4.001 17 C -0.538 4.538 18 H 0.085 0.915 19 C -0.178 4.178 20 N -0.545 5.545 21 Si 0.776 3.224 22 H -0.207 1.207 23 H -0.219 1.219 24 H -0.185 1.185 25 C -0.217 4.217 26 C -0.186 4.186 27 C -0.123 4.123 28 N -0.159 5.159 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.148 0.852 32 H 0.283 0.717 33 H 0.158 0.842 34 H 0.189 0.811 35 H 0.179 0.821 36 H 0.263 0.737 37 H 0.247 0.753 38 H 0.042 0.958 39 H 0.057 0.943 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -22.076 -9.225 10.895 26.289 hybrid contribution 1.104 -0.072 -0.559 1.240 sum -20.972 -9.297 10.335 25.161 Atomic orbital electron populations 1.22417 0.70444 1.06947 1.05368 1.50744 1.09656 1.03335 1.53669 1.26914 0.84521 0.97227 0.94866 1.70543 1.23142 1.11263 1.25739 1.22431 0.92064 0.89283 0.99324 1.17522 0.87883 0.92568 1.04662 1.21304 1.00573 0.90945 0.99840 1.21243 0.90087 1.01543 0.98237 1.21399 1.00293 0.91301 1.01445 1.17595 0.83599 0.92317 1.01113 1.42358 1.11896 1.25716 1.52402 1.16188 0.83699 0.81050 0.79675 1.90906 1.42885 1.63396 1.53040 1.44888 1.07414 1.27758 1.55880 1.20455 0.95625 0.83588 0.92993 1.19104 0.91319 0.90778 0.98862 1.20642 1.21355 1.15516 0.96253 0.91453 1.25730 0.97666 0.97053 0.97355 1.70141 1.46979 1.33688 1.03721 0.85678 0.79083 0.79460 0.78143 1.20715 1.21878 1.18495 1.23055 1.01680 1.06363 0.90651 1.22341 1.00828 0.97468 0.97956 1.21155 0.90922 1.00689 0.99572 1.78050 1.00907 1.09368 1.27568 0.88906 0.88710 0.85152 0.71717 0.84226 0.81111 0.82123 0.73684 0.75336 0.95844 0.94284 0.93335 0.89615 0.89729 0.91411 0.91424 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.56 11.52 127.77 1.47 2.03 16 2 N -0.38 -7.29 4.04 -373.64 -1.51 -8.80 16 3 C 0.26 5.30 12.64 180.38 2.28 7.58 16 4 N -0.58 -18.57 10.82 -193.08 -2.09 -20.66 16 5 C 0.25 8.03 7.77 137.47 1.07 9.10 16 6 C -0.02 -0.73 5.87 -20.06 -0.12 -0.85 16 7 C -0.11 -2.57 9.68 22.50 0.22 -2.35 16 8 C -0.09 -1.77 10.03 22.22 0.22 -1.55 16 9 C -0.12 -2.64 9.96 22.43 0.22 -2.42 16 10 C 0.15 4.44 6.27 38.11 0.24 4.68 16 11 N -0.67 -19.98 5.34 -317.27 -1.69 -21.68 16 12 C 0.69 27.34 8.40 179.05 1.50 28.84 16 13 O -0.62 -30.06 13.87 -3.98 -0.06 -30.11 16 14 N -0.71 -27.60 5.42 -478.54 -2.60 -30.19 16 15 C 0.20 9.17 5.55 86.38 0.48 9.65 16 16 C 0.00 0.01 1.71 -52.92 -0.09 -0.08 16 17 C -0.50 -25.11 8.20 25.60 0.21 -24.90 16 18 H 0.07 3.21 7.82 -2.91 -0.02 3.18 16 19 C 0.02 1.18 5.41 84.66 0.46 1.64 16 20 N -0.91 -51.29 12.14 21.45 0.26 -51.02 16 21 Si 0.95 41.87 29.54 68.60 2.03 43.90 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 24 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 25 C -0.18 -7.35 9.93 30.62 0.30 -7.04 16 26 C -0.15 -6.90 8.94 30.62 0.27 -6.63 16 27 C -0.10 -3.56 8.32 22.61 0.19 -3.37 16 28 N -0.33 -9.09 12.32 -52.35 -0.65 -9.73 16 29 H 0.09 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 32 H 0.27 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.14 2.97 7.83 -2.91 -0.02 2.95 16 34 H 0.17 1.85 8.06 -2.91 -0.02 1.82 16 35 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.42 9.06 8.84 -92.71 -0.82 8.24 16 37 H 0.41 14.09 8.03 -92.71 -0.74 13.34 16 38 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.04 1.80 8.10 -2.38 -0.02 1.78 16 40 H 0.26 14.10 8.32 -92.71 -0.77 13.33 16 41 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 43 H 0.07 3.46 7.82 -2.39 -0.02 3.44 16 44 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.12 4.99 6.12 -2.91 -0.02 4.98 16 Total: -1.00 -81.14 389.07 2.11 -79.03 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.52 Total: 34.95 kcal Atomic # 6 Polarization: 5.38 SS G_CDS: 8.93 Total: 14.32 kcal Atomic # 7 Polarization: -133.81 SS G_CDS: -8.27 Total: -142.09 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -0.06 Total: -30.11 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -81.14 2.11 -79.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373931815.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.307 kcal (2) G-P(sol) polarization free energy of solvation -81.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds