Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46499 * 120.00022 * 2 1 4 4 C 1.38407 * 119.99871 * 179.97438 * 2 1 3 5 5 N 1.32507 * 119.21904 * 359.97438 * 4 2 1 6 6 C 1.32261 * 120.73987 * 179.97438 * 5 4 2 7 7 C 1.38626 * 119.19535 * 0.02562 * 6 5 4 8 8 C 1.38581 * 118.56032 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.39981 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47264 * 95.00425 * 9 8 7 11 11 C 1.34782 * 119.99801 * 179.97438 * 10 9 8 12 12 O 1.21586 * 120.00202 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99290 * 179.97438 * 11 10 9 14 14 C 1.39957 * 119.99275 * 174.84692 * 13 11 10 15 15 C 1.39288 * 119.94243 * 145.76977 * 14 13 11 16 16 C 1.38499 * 120.42717 * 180.02562 * 15 14 13 17 17 C 1.37673 * 120.31962 * 359.97438 * 16 15 14 18 18 C 1.40748 * 119.88736 * 359.97438 * 17 16 15 19 19 C 1.41399 * 120.20988 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00263 * 205.17681 * 19 18 17 21 21 C 1.39932 * 120.00172 * 25.17967 * 19 18 17 22 22 N 1.30826 * 120.00233 * 16.78264 * 21 19 18 23 23 Si 1.86803 * 120.00106 * 196.78355 * 21 19 18 24 24 H 1.48498 * 109.47158 * 60.00172 * 23 21 19 25 25 H 1.48498 * 109.47254 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47051 * 299.99836 * 23 21 19 27 27 C 1.38238 * 119.95223 * 325.49760 * 14 13 11 28 28 N 1.32290 * 119.19763 * 359.73521 * 8 7 6 29 29 H 1.09002 * 109.47194 * 89.99948 * 1 2 3 30 30 H 1.08998 * 109.47293 * 330.00136 * 1 2 3 31 31 H 1.09000 * 109.47618 * 210.00067 * 1 2 3 32 32 H 1.09006 * 109.46982 * 89.99788 * 3 2 1 33 33 H 1.09000 * 109.46952 * 209.99841 * 3 2 1 34 34 H 1.08999 * 109.47412 * 329.99695 * 3 2 1 35 35 H 1.07993 * 120.40282 * 179.97438 * 6 5 4 36 36 H 1.08002 * 120.72179 * 180.02562 * 7 6 5 37 37 H 1.09005 * 109.47266 * 214.99967 * 9 8 7 38 38 H 1.08994 * 109.47265 * 334.99911 * 9 8 7 39 39 H 0.96995 * 119.99698 * 359.97438 * 10 9 8 40 40 H 0.96991 * 120.00681 * 354.85352 * 13 11 10 41 41 H 1.07999 * 119.79060 * 0.02562 * 15 14 13 42 42 H 1.07999 * 119.83580 * 179.97438 * 16 15 14 43 43 H 1.08001 * 120.05708 * 179.97438 * 17 16 15 44 44 H 0.97001 * 120.00465 * 179.97438 * 22 21 19 45 45 H 1.08000 * 120.15488 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1570 -1.1987 0.0005 5 7 1.4788 -2.3370 0.0016 6 6 2.1095 -3.4996 0.0016 7 6 3.4956 -3.5170 0.0011 8 6 4.1733 -2.3082 0.0000 9 6 5.6800 -2.2787 -0.0012 10 7 6.1649 -2.1493 -1.3776 11 6 7.4892 -2.1015 -1.6238 12 8 8.2814 -2.1652 -0.7037 13 7 7.9351 -1.9829 -2.8902 14 6 9.3034 -1.8248 -3.1381 15 6 9.8723 -2.3841 -4.2799 16 6 11.2253 -2.2343 -4.5349 17 6 12.0232 -1.5296 -3.6618 18 6 11.4622 -0.9579 -2.5045 19 6 12.2754 -0.2333 -1.6030 20 1 11.9869 -0.1460 -0.5658 21 6 13.4541 0.3709 -2.0544 22 7 13.6459 0.5548 -3.3354 23 14 14.7540 0.9148 -0.8280 24 1 15.2271 -0.2610 -0.0541 25 1 15.8974 1.5220 -1.5552 26 1 14.1703 1.9162 0.1004 27 6 10.0871 -1.1090 -2.2525 28 7 3.4816 -1.1805 -0.0058 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 0.8900 0.5138 31 1 -0.3634 -0.8899 0.5138 32 1 2.3791 1.5834 1.0277 33 1 3.1499 1.1383 -0.5138 34 1 1.6084 2.0284 -0.5139 35 1 1.5513 -4.4241 0.0028 36 1 4.0357 -4.4523 0.0007 37 1 6.0273 -1.4296 0.5876 38 1 6.0619 -3.2025 0.4332 39 1 5.5329 -2.0980 -2.1115 40 1 7.3079 -2.0071 -3.6296 41 1 9.2543 -2.9383 -4.9709 42 1 11.6565 -2.6723 -5.4229 43 1 13.0779 -1.4157 -3.8646 44 1 14.4628 0.9739 -3.6484 45 1 9.6461 -0.6715 -1.3690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455910308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = 66.630601 kcal Electronic energy + Delta-G solvation = -27856.108935 eV Core-core repulsion = 23874.378661 eV Total energy + Delta-G solvation = -3981.730274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33323 -39.85932 -37.49185 -37.05634 -35.29532 -34.33220 -33.49683 -32.92035 -31.56941 -29.75616 -28.84535 -28.22624 -26.72008 -26.08528 -25.22264 -23.31947 -22.02095 -21.46157 -20.80131 -20.05469 -18.23810 -17.99562 -17.77628 -17.18906 -16.14918 -15.88289 -15.66757 -15.40534 -15.09071 -14.75883 -14.66506 -14.56351 -14.41470 -14.04201 -13.94753 -13.20706 -13.03516 -12.91630 -12.81927 -12.66996 -12.56887 -12.28838 -12.08215 -11.59652 -11.23957 -11.15561 -11.06041 -11.01297 -10.85556 -10.55393 -10.44232 -10.15180 -9.67316 -9.45983 -9.37229 -9.08274 -8.96851 -8.92681 -8.21847 -7.38325 -6.83652 -6.64725 -4.27413 0.73875 0.92146 2.33313 2.77801 2.91950 3.07312 3.12412 3.16637 3.28011 3.64223 3.73771 3.78086 4.01199 4.12948 4.33947 4.60384 4.71301 4.79718 4.89238 4.95058 4.98134 5.06785 5.29225 5.31878 5.41612 5.55249 5.56609 5.60942 5.78475 5.98237 6.29113 6.44927 6.45462 6.47640 6.59911 6.80354 6.84273 7.10076 7.10357 7.15397 7.29932 7.39332 7.74100 7.87923 7.98188 8.05506 8.16992 8.30381 8.46896 8.72461 8.95004 9.03234 9.08697 10.27579 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016427 B = 0.002065 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.058835 B =13555.582856 C =14273.866259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.593 5.593 3 C 0.101 3.899 4 C 0.561 3.439 5 N -0.568 5.568 6 C 0.192 3.808 7 C -0.274 4.274 8 C 0.206 3.794 9 C 0.192 3.808 10 N -0.744 5.744 11 C 0.702 3.298 12 O -0.563 6.563 13 N -0.680 5.680 14 C 0.169 3.831 15 C -0.263 4.263 16 C -0.092 4.092 17 C -0.173 4.173 18 C 0.120 3.880 19 C -0.458 4.458 20 H 0.078 0.922 21 C 0.076 3.924 22 N -0.797 5.797 23 Si 0.908 3.092 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.266 1.266 27 C -0.209 4.209 28 N -0.552 5.552 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.169 0.831 36 H 0.147 0.853 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.393 0.607 40 H 0.394 0.606 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.119 0.881 44 H 0.280 0.720 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.807 -3.504 3.901 24.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.310 5.310 3 C -0.042 4.042 4 C 0.206 3.794 5 N -0.291 5.291 6 C 0.024 3.976 7 C -0.300 4.300 8 C 0.057 3.943 9 C 0.067 3.933 10 N -0.402 5.402 11 C 0.402 3.598 12 O -0.438 6.438 13 N -0.326 5.326 14 C 0.077 3.923 15 C -0.285 4.285 16 C -0.111 4.111 17 C -0.193 4.193 18 C 0.117 3.883 19 C -0.488 4.488 20 H 0.096 0.904 21 C -0.142 4.142 22 N -0.422 5.422 23 Si 0.733 3.267 24 H -0.188 1.188 25 H -0.204 1.204 26 H -0.190 1.190 27 C -0.231 4.231 28 N -0.275 5.275 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.186 0.814 36 H 0.165 0.835 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.226 0.774 40 H 0.227 0.773 41 H 0.106 0.894 42 H 0.109 0.891 43 H 0.136 0.864 44 H 0.090 0.910 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -23.530 -2.348 4.629 24.096 hybrid contribution 0.266 -0.468 -0.289 0.611 sum -23.265 -2.816 4.340 23.833 Atomic orbital electron populations 1.21621 0.77536 1.03133 1.01687 1.45893 1.05805 1.02042 1.77305 1.21669 0.97747 0.82907 1.01906 1.19234 0.85087 0.86376 0.88750 1.67888 1.41063 0.98004 1.22127 1.22950 0.91672 0.95222 0.87725 1.22474 0.96481 1.00148 1.10898 1.21380 0.96146 0.87754 0.89020 1.19915 0.85146 1.04154 0.84101 1.44899 1.05719 1.81479 1.08079 1.15865 0.81772 0.78220 0.83911 1.90991 1.53811 1.55885 1.43163 1.42551 1.08009 1.76163 1.05875 1.17220 0.80083 0.98195 0.96797 1.20005 0.95610 1.12051 1.00820 1.20439 0.93026 0.99389 0.98255 1.21333 0.99693 1.01200 0.97087 1.17484 0.90144 0.88944 0.91729 1.19544 1.04054 1.28315 0.96841 0.90413 1.25896 0.98608 0.94031 0.95621 1.69821 1.25460 1.32033 1.14905 0.86369 0.79665 0.79602 0.81068 1.18818 1.20439 1.19048 1.21000 0.93793 1.06351 1.01940 1.67723 1.06740 1.31691 1.21367 0.93030 0.91297 0.90182 0.92875 0.89849 0.91256 0.81375 0.83473 0.89387 0.89279 0.77374 0.77288 0.89402 0.89098 0.86359 0.90961 0.87500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 10.44 59.84 0.62 1.32 16 2 N -0.59 -5.63 3.37 -191.90 -0.65 -6.27 16 3 C 0.10 0.80 10.44 59.85 0.62 1.43 16 4 C 0.56 6.41 8.17 -322.80 -2.64 3.77 16 5 N -0.57 -5.94 9.11 -13.93 -0.13 -6.07 16 6 C 0.19 1.57 11.30 -17.22 -0.19 1.38 16 7 C -0.27 -2.34 9.83 -39.31 -0.39 -2.72 16 8 C 0.21 2.22 6.19 -82.27 -0.51 1.71 16 9 C 0.19 2.31 6.02 -5.19 -0.03 2.28 16 10 N -0.74 -9.85 5.55 -66.41 -0.37 -10.22 16 11 C 0.70 12.86 8.29 -86.91 -0.72 12.14 16 12 O -0.56 -12.91 14.10 5.29 0.07 -12.84 16 13 N -0.68 -12.41 5.34 -14.27 -0.08 -12.48 16 14 C 0.17 3.91 6.25 -83.76 -0.52 3.39 16 15 C -0.26 -5.89 9.97 -39.10 -0.39 -6.28 16 16 C -0.09 -2.18 10.02 -39.69 -0.40 -2.58 16 17 C -0.17 -4.62 8.69 -38.84 -0.34 -4.96 16 18 C 0.12 3.36 5.57 -106.85 -0.59 2.77 16 19 C -0.46 -12.78 9.05 -37.75 -0.34 -13.12 16 20 H 0.08 2.14 7.90 -52.48 -0.41 1.73 16 21 C 0.08 1.96 5.16 -17.35 -0.09 1.87 16 22 N -0.80 -21.03 10.94 55.55 0.61 -20.42 16 23 Si 0.91 19.40 29.59 -169.99 -5.03 14.37 16 24 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 26 H -0.27 -5.63 7.11 56.52 0.40 -5.22 16 27 C -0.21 -5.54 8.39 -38.69 -0.32 -5.87 16 28 N -0.55 -6.65 9.05 -10.16 -0.09 -6.75 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.32 8.07 -51.93 -0.42 -0.10 16 31 H 0.08 0.58 7.33 -51.93 -0.38 0.20 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.80 7.33 -51.93 -0.38 0.42 16 34 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 35 H 0.17 0.78 8.06 -52.49 -0.42 0.35 16 36 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 37 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.01 8.06 -51.93 -0.42 0.60 16 39 H 0.39 4.28 8.48 -40.82 -0.35 3.94 16 40 H 0.39 5.60 8.84 -40.82 -0.36 5.24 16 41 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 43 H 0.12 3.23 6.16 -52.49 -0.32 2.90 16 44 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 45 H 0.11 2.94 6.48 -52.49 -0.34 2.60 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -33.98 383.84 -12.00 -45.98 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.90 Total: 12.39 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -6.23 Total: -3.47 kcal Atomic # 7 Polarization: -61.51 SS G_CDS: -0.70 Total: -62.21 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.07 Total: -12.84 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.98 -12.00 -45.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455910308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.611 kcal (2) G-P(sol) polarization free energy of solvation -33.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds