Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99835 * 2 1 4 4 C 1.52998 * 109.47256 * 177.19544 * 3 2 1 5 5 N 1.46896 * 109.47374 * 64.00693 * 4 3 2 6 6 C 1.46900 * 111.00034 * 75.57220 * 5 4 3 7 7 C 1.53000 * 109.47267 * 190.00424 * 6 5 4 8 8 C 1.50699 * 109.47560 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99660 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00458 * 179.97438 * 8 7 6 11 11 C 1.46493 * 119.99707 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99885 * 179.97438 * 10 8 7 13 13 C 1.50704 * 109.46916 * 90.00429 * 12 10 8 14 14 H 1.08004 * 119.99989 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99883 * 179.97438 * 13 12 10 16 16 N 1.31517 * 119.99738 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00125 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46867 * 90.00082 * 17 15 13 19 19 H 1.48496 * 109.47385 * 210.00077 * 17 15 13 20 20 H 1.48504 * 109.47154 * 330.00385 * 17 15 13 21 21 C 1.46897 * 111.00328 * 199.52785 * 5 4 3 22 22 C 1.50702 * 109.47418 * 76.03807 * 21 5 4 23 23 C 1.33632 * 126.03931 * 85.59217 * 22 21 5 24 24 N 1.31780 * 114.50104 * 179.97438 * 23 22 21 25 25 C 1.29027 * 117.12427 * 0.02562 * 24 23 22 26 26 S 1.70975 * 110.16656 * 359.71937 * 25 24 23 27 27 H 1.09002 * 109.46638 * 182.94280 * 1 2 3 28 28 H 1.08998 * 109.47469 * 302.94272 * 1 2 3 29 29 H 1.09001 * 109.47165 * 62.94512 * 1 2 3 30 30 H 1.09000 * 109.47462 * 57.19641 * 3 2 1 31 31 H 1.08999 * 109.47152 * 297.19483 * 3 2 1 32 32 H 1.09000 * 109.47380 * 304.00428 * 4 3 2 33 33 H 1.09003 * 109.47155 * 184.00421 * 4 3 2 34 34 H 1.09000 * 109.47122 * 309.99779 * 6 5 4 35 35 H 1.09001 * 109.47025 * 70.00332 * 6 5 4 36 36 H 1.09009 * 109.47025 * 299.99970 * 7 6 5 37 37 H 1.09001 * 109.47174 * 59.99998 * 7 6 5 38 38 H 1.09003 * 109.47373 * 89.99990 * 11 10 8 39 39 H 1.09003 * 109.46824 * 209.99872 * 11 10 8 40 40 H 1.08999 * 109.47633 * 329.99516 * 11 10 8 41 41 H 1.08997 * 109.46923 * 209.99884 * 12 10 8 42 42 H 1.08997 * 109.47469 * 330.00187 * 12 10 8 43 43 H 0.97001 * 119.99491 * 180.02562 * 16 15 13 44 44 H 1.09004 * 109.47363 * 196.03944 * 21 5 4 45 45 H 1.09000 * 109.47108 * 316.03369 * 21 5 4 46 46 H 1.07998 * 122.75019 * 0.02562 * 23 22 21 47 47 H 1.07997 * 124.91505 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5338 1.1854 0.0706 5 7 4.0290 0.5173 -1.1403 6 6 4.0069 1.4296 -2.2914 7 6 4.2873 0.6414 -3.5724 8 6 4.2653 1.5773 -4.7533 9 8 4.0464 2.7586 -4.5867 10 7 4.4889 1.1019 -5.9944 11 6 4.7528 -0.3250 -6.1956 12 6 4.4669 2.0118 -7.1423 13 6 5.8514 2.5596 -7.3756 14 1 6.6660 2.2603 -6.7328 15 6 6.0780 3.4430 -8.4097 16 7 7.2863 3.9207 -8.6136 17 14 4.6692 3.9602 -9.5220 18 1 4.0149 5.1700 -8.9619 19 1 5.1944 4.2641 -10.8773 20 1 3.6782 2.8577 -9.6108 21 6 5.3760 -0.0286 -0.9269 22 6 5.2837 -1.2858 -0.1012 23 6 5.0587 -2.5178 -0.5673 24 7 5.0232 -3.4545 0.3590 25 6 5.2052 -3.0811 1.5805 26 16 5.4607 -1.3919 1.6487 27 1 -0.3633 -1.0264 0.0528 28 1 -0.3634 0.5588 0.8624 29 1 -0.3633 0.4674 -0.9152 30 1 1.6493 1.8639 0.8638 31 1 1.7289 1.8284 -0.9141 32 1 3.8120 0.6010 0.9476 33 1 3.9737 2.1802 0.1423 34 1 3.0269 1.9014 -2.3624 35 1 4.7708 2.1963 -2.1620 36 1 5.2674 0.1695 -3.5015 37 1 3.5235 -0.1254 -3.7018 38 1 3.8114 -0.8487 -6.3618 39 1 5.3996 -0.4560 -7.0631 40 1 5.2438 -0.7319 -5.3116 41 1 4.1363 1.4704 -8.0287 42 1 3.7800 2.8338 -6.9413 43 1 7.4456 4.5424 -9.3409 44 1 5.8314 -0.2591 -1.8901 45 1 5.9870 0.7063 -0.4028 46 1 4.9183 -2.7287 -1.6171 47 1 5.2013 -3.7407 2.4357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000516847326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = -16.745442 kcal Electronic energy + Delta-G solvation = -27740.395284 eV Core-core repulsion = 23858.200754 eV Total energy + Delta-G solvation = -3882.194530 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.88002 -39.27916 -38.40224 -37.07735 -34.93427 -32.64459 -32.03974 -31.58636 -29.20371 -28.22096 -26.76521 -26.17262 -25.74826 -24.26211 -23.47435 -22.01552 -20.95987 -19.95435 -18.42466 -18.26731 -16.97960 -16.90417 -16.55080 -16.36783 -15.78576 -15.56231 -15.28690 -15.07215 -14.99230 -14.34522 -14.25918 -14.09251 -14.06764 -13.76430 -13.21680 -13.01329 -12.71898 -12.54181 -12.34541 -12.31280 -12.07153 -11.99245 -11.74763 -11.65516 -11.38549 -11.30448 -11.15710 -10.94220 -10.73130 -10.52153 -10.15053 -9.82761 -9.75654 -9.55742 -9.43907 -9.08085 -9.01394 -8.60138 -8.48065 -7.70736 -6.10091 -4.08778 0.55071 1.18557 1.56803 2.72040 3.28266 3.34065 3.34538 3.36009 3.53310 3.69854 4.03038 4.18945 4.38560 4.60582 4.74308 4.90129 4.94605 5.04716 5.09404 5.10588 5.15965 5.20376 5.23141 5.26349 5.31400 5.36082 5.40395 5.52689 5.58367 5.61859 5.64016 5.80508 5.85521 6.00276 6.01881 6.05678 6.17649 6.68795 6.80901 6.84115 6.94015 7.10301 7.32820 7.55569 7.60024 8.24312 8.45775 8.91206 8.97561 9.50376 11.03350 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.002596 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.396612 B =10785.116936 C =11710.060520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.372 6.372 3 C 0.067 3.933 4 C 0.053 3.947 5 N -0.525 5.525 6 C 0.071 3.929 7 C -0.135 4.135 8 C 0.507 3.493 9 O -0.545 6.545 10 N -0.598 5.598 11 C 0.084 3.916 12 C 0.215 3.785 13 C -0.528 4.528 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.877 3.123 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.123 3.877 22 C -0.194 4.194 23 C 0.050 3.950 24 N -0.469 5.469 25 C 0.015 3.985 26 S 0.105 5.895 27 H 0.082 0.918 28 H 0.035 0.965 29 H 0.039 0.961 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.029 0.971 42 H 0.036 0.964 43 H 0.264 0.736 44 H 0.102 0.898 45 H 0.051 0.949 46 H 0.176 0.824 47 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 -12.255 22.043 26.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.290 6.290 3 C -0.010 4.010 4 C -0.075 4.075 5 N -0.249 5.249 6 C -0.057 4.057 7 C -0.176 4.176 8 C 0.294 3.706 9 O -0.423 6.423 10 N -0.330 5.330 11 C -0.060 4.060 12 C 0.094 3.906 13 C -0.567 4.567 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.537 5.537 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.190 1.190 21 C -0.006 4.006 22 C -0.315 4.315 23 C -0.101 4.101 24 N -0.182 5.182 25 C -0.283 4.283 26 S 0.356 5.644 27 H 0.101 0.899 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.106 0.894 37 H 0.115 0.885 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.120 0.880 45 H 0.069 0.931 46 H 0.193 0.807 47 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -8.445 -11.969 22.592 26.925 hybrid contribution -0.382 0.901 -1.346 1.664 sum -8.827 -11.068 21.246 25.530 Atomic orbital electron populations 1.22710 0.81826 1.02415 0.99655 1.88002 1.18716 1.27081 1.95249 1.22532 0.93108 0.85242 1.00134 1.22211 0.93967 0.97976 0.93395 1.61895 1.22232 1.36594 1.04228 1.21885 1.02874 0.92849 0.88043 1.21664 1.03758 0.99150 0.92983 1.20312 0.77479 0.88740 0.84081 1.90663 1.49615 1.17104 1.84968 1.47835 1.68922 1.08638 1.07591 1.21666 1.00264 0.81561 1.02551 1.19657 0.98490 0.89391 0.83043 1.21329 0.93714 1.26705 1.14918 0.90824 1.24867 0.95581 0.95427 0.97198 1.69900 1.20529 1.31788 1.31454 0.86838 0.82798 0.79804 0.80179 1.19928 1.21065 1.19046 1.20525 0.90486 0.90773 0.98859 1.25821 1.10220 1.00200 0.95253 1.21697 1.01211 0.86825 1.00408 1.66318 1.15338 1.36664 0.99887 1.28290 1.04597 0.96906 0.98538 1.83953 1.66161 1.08611 1.05667 0.89937 0.94592 0.94188 0.93231 0.92847 0.90142 0.92635 0.89641 0.93463 0.89423 0.88536 0.93576 0.90640 0.92073 0.95265 0.94597 0.92562 0.87989 0.93088 0.80706 0.78823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.37 -4.32 10.64 -35.23 -0.37 -4.69 16 3 C 0.07 0.67 6.12 37.16 0.23 0.90 16 4 C 0.05 0.52 5.19 -3.83 -0.02 0.51 16 5 N -0.53 -5.81 4.29 -236.07 -1.01 -6.82 16 6 C 0.07 0.93 4.07 -3.82 -0.02 0.91 16 7 C -0.14 -1.86 4.22 -27.88 -0.12 -1.97 16 8 C 0.51 9.95 7.67 -10.99 -0.08 9.87 16 9 O -0.55 -12.98 15.56 5.56 0.09 -12.89 16 10 N -0.60 -12.11 2.86 -182.96 -0.52 -12.64 16 11 C 0.08 1.25 10.24 59.84 0.61 1.87 16 12 C 0.21 5.24 4.23 -5.19 -0.02 5.22 16 13 C -0.53 -15.14 9.94 -34.44 -0.34 -15.48 16 14 H 0.07 2.31 8.06 -52.48 -0.42 1.89 16 15 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 16 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 17 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 18 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 21 C 0.12 1.23 5.37 -4.98 -0.03 1.21 16 22 C -0.19 -1.95 5.57 -35.92 -0.20 -2.15 16 23 C 0.05 0.54 11.25 -19.19 -0.22 0.32 16 24 N -0.47 -5.35 10.54 -15.75 -0.17 -5.51 16 25 C 0.01 0.13 12.23 51.58 0.63 0.76 16 26 S 0.10 0.88 22.05 -107.50 -2.37 -1.49 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.57 6.67 -51.93 -0.35 0.22 16 32 H 0.08 0.78 6.24 -51.93 -0.32 0.46 16 33 H 0.06 0.51 8.00 -51.93 -0.42 0.09 16 34 H 0.09 1.19 6.52 -51.93 -0.34 0.85 16 35 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 36 H 0.09 1.07 5.51 -51.92 -0.29 0.78 16 37 H 0.10 1.20 8.11 -51.93 -0.42 0.77 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 40 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 41 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 42 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 43 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.10 0.99 5.87 -51.93 -0.31 0.68 16 45 H 0.05 0.48 7.99 -51.93 -0.42 0.07 16 46 H 0.18 1.71 8.06 -52.49 -0.42 1.29 16 47 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 395.38 15.07 5.96 5.96 Total: -1.00 -35.78 395.38 -8.15 -43.93 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.30 Total: -1.15 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: 1.44 Total: 5.32 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.93 Total: -51.88 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.29 Total: -17.59 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.37 Total: -1.49 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.78 -8.15 -43.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516847326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.186 kcal (2) G-P(sol) polarization free energy of solvation -35.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds